Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <-----------HVH21                   <---------At4g35610                           <-------GAMYB                       --------->At4g35610                          --------->MYB55(2)                 --------->SPL7                      <---                <------MYB46(1)                            <-----------HVH21                    <----                <------MYB83<---------MYB52(1)             <---------SPL7                    --------               <---------TOE2(3)                          --------->DEAR3(1)                 --------               --------->MYB59     <----------DOF2       --------->At4g35610                 <-------       --------->LBD16    <---------DEAR3(2)          --------->ZAT2                  --------->DEAR3(1)     <---------LBD16      <---------MYB46(3)          --------->At4g35610<---------ARR14(2)  <-------    <---------LBD16      <---------DEAR3(1)           <---------At4g35610--------->ARR14(2) ------->TEIL ----->ZmHOX2a(1)        <---------TOE1(2)            <---------ZAT2 <---------At4g35610 <---------TGA1a -------->RAV1(2)        <---------TOE2(2)         --------->At4g35610  <------ZmHOX2a(1)<---------O2   tcctgcctcgggagaattaggttttcgtcggttagggcttttgaatcggcgatagcagcagcgtccgatgcagaggatttggaagacgcagacgtagctg  756000                                                             <---------GLK1(1)                                                             --------->GLK1(1)                                                            --------->ARR14(2)                                                            <-----------ARR10                                                            <---------ARR14(2)                                                           --------->At4g35610                                                           <------NtERF2                                                           <---------At4g35610                                                           --------->ATERF1(1)                                                          <---------DEAR3(2)                                                          <---------RAP2.3(1)                                                          <---------ERF1                                                          <---------ATERF1(1)                                                          ------>NtERF2                                                         <---------RAP2.3(2)                                                         <---------DEAR3(1)                                                         <---------RAP2.3(3)                                                         <---------RAP2.6(2)                                                         --------->DEAR3(1)                                                        --------->DREB2C(1)                                                        --------->ATERF1(1)                                                        <------NtERF2                                                        <---------DREB2C(1)                                                        --------->DEAR4(2)                                                        <---------At4g35610                                                       <---------ERF1                                                       <---------RAP2.3(1)                                                       <---------ORA47(2)                                                       <---------DEAR4(2)                                                       <---------RRTF1(1)                                                       ------>NtERF2                                                       <---------ATERF1(1)                                                      <---------RRTF1(2)                                                      <---------RRTF1(3)                                                      <---------RAP2.3(3)                                                      --------->ALFIN1                                                      <---------RAP2.6(2)                                                      <---------RAP2.3(2)                                                      <---------DEAR3(1)                                                      --------->DEAR3(1)                                                      --------->ATERF1(2)                                                      <---------ATERF1(2)                                                      <---------ANAC46                                                     --------->DREB2C(1)                                                     --------->ATERF1(1)                                                     --------->DEAR4(2)                                                     --------->RAP2.3(1)                                                     <---------At4g35610                                                     --------->At4g35610                                                     <------NtERF2                                                     <---------ABI4(1)                                                    <---------ATERF1(1)                                                    ------>NtERF2                                                    <---------RAP2.6(1)                                                    <---------RRTF1(1)                                                    <---------ORA47(2)                                                    <---------RAP2.3(1)                                                    <---------DEAR4(2)                                                    <---------ERF1                                                   <---------DEAR3(1)                                                   <---------RAP2.6(2)                                                   --------->ATERF1(2)                                                   --------->DEAR3(1)                                                   <---------RAP2.3(2)                                                   <---------RAP2.3(3)                                                   --------->ALFIN1                                                   <---------RRTF1(3)                                                   <---------RRTF1(2)                                                   <---------ATERF1(2)                                                   <---------ANAC46                                                  --------->ATERF1(1)                                                  <---------ABI4(1)                                                  <------NtERF2                                                  --------->RAP2.3(1)                                                 <---------ATERF1(1)                      --------->LBD16            <---------DEAR4(2)               <-------MYC2                    <---------LBD16              <---------RAP2.3(1)              ------->MYC3                  <---------ARR14(2)            <---------DEAR3(1)--------->At4g35610      <---------ARR14(2)                        <---------RAP2.3(2)<----------CDC5------->MYC2 ------ANAC46     --------->ARR14(2)           --------->ATERF1(1)--------->LBD16 <-------MYC3 ---TEIL        ----------->ARR10              --------->At4g35610<---------At4g35610 ->At4g35610  --------->At4g35610          --------->LBD16<---------RRTF1(1)      <-------PIF5 ->ZAT2       <---------At4g35610        <---------LBD16--------->RAP2.3(1)       ------->PIF5 --At4g35610<------ZmHOX2a(1)          <---------ALFIN1<---------RAP2.6(1)      ------------>OsbHLH66 --ZAT2  <-----------RAV1(2)  <-----------GT1  <---------At4g35610----------->RAV1(2)      <------NtERF2   cgttagaagaaccaggagcagagccggatgattttccatctccaccggaagcggcggcggcggctctccgctgagccttaagctcgtgctcgcgtcgttc  756100                --------->ARR14(2)                <---------GLK1(2)                                                    <---------ANAC58                <---------ARR14(2)                                                   <---------ANAC55(2)             --------->HSFB2a(2)                                         <---------At4g35610             <---------HSFB2a(2)                                         --------->At4g35610          --------->GLK1(2)                                      <---------GLK1(2)   <---------ANAC58        <---------HSFB2a(1)                                      <---------ARR14(2)  --------->ANAC55(2)        --------->HSFB2a(1)                      <---------ARR11(3)      <---------ZAT2            <-        --------->HSFC1(2)                       --------->ARR11(3)      --------->ZAT2          <---        <---------HSFC1(2)                       --------->ARR14(2)   ------>ZmHOX2a(1)          ----   --------->HSFB2a(2)                           <---------ARR14(2)  --------->TOE2(3)          <----   <---------HSFB2a(2)           ------>ZmHOX2a(2)               --------->ARR14(2) <---------TOE2(2) ------>ZmHOX2a(1)     <---------At4g35610 <----------DOF2--------->MYB46(3)        <---------TOE1(2)   ttcctctcgaagcttctggattttcttctgctcgatctcagaccgcttgaagaacttcttaccaccagattcctcagctagactcttacgtttcttcaga  756200                                                     <------MYB46(1)                                                 <---------ARR14(2)                                                 --------->ARR14(2)                                                <------ZmHOX2a(1)                                             --------->LBD16                                             ------>NtERF2                                            --------->DEAR3(1)                                           --------->ATERF1(1)                                           <------NtERF2                                          <---------ATERF1(1)                                          ------>NtERF2                                          --------->ABI4(1)                          ----------->GT1--------->DEAR3(1)               <------ZmHOX2a(2)         <---------ATERF1(2)              --------->ARR11(3)         --------->ATERF1(2)              --------->AGP1             --------->RAP2.3(2)              <---------ARR14(2)         --------->RAP2.3(3)             --------->At4g35610         <---------DEAR3(1)          <---------At4g35610           --------->ORA47(2)                               --------->ICU4          --------->At4g35610           --------->RAP2.3(1)                     ------>NtERF2       --------->LBD16 ---------->DOF2  --------->ERF1                         <---------O2     ----------->RAV1(2) --------->DAG2 --------->DEAR4(2)                     --------->DEAR3(1) ----------ARR10<-------TEIL            --------->ATERF1(1) <---------MYB52(1) ----------->HVH21 --------ARR10--------->ARR14(2)       <---------ATERF1(1) <-------GAMYB    ----------->HVH21 ----->GLK1(2)<---------ARR11(3)      ------->GAMYB  <------MYB83          <------NtERF2--------->ARR11(3) -----GLK1(2)--------->GLK1(1)       --------->MYB46(3)   <-----------RAV1(1)  --------->O2   atctcttccctgagcagatccatcggaaaggtttcttcaatcgccgccgaggatttggttctgttgtctgagaaggtcgcgacgacgggagataatgaaa  756300                          <---------ZAT6                   --------->TGA2(2)                  <-----------TGA1                 --------->O2                 >>>>>>>>>>HY5                 <<<<<<<<<<HY5                 <---------bZIP60(1)                 <---------O2                 --------->TGA2(1)                 <---------TGA2(1)                 --------->bZIP60(1)                 --------->ANAC55(2)                 <---------ANAC55(2)                ----------->STF1                <-----------STF1                --------->RAP2.6(3)               <---------TGA2(2)                    <----------DOF2                     <-----------RAV1(1)              ----------->HVH21            <---------AHL20(2)                         <----------DOF2              ----------->TGA1             --------->AHL20(2)                        <---------ANAC58            <---------AtLEC2               <---------YAB1--------->AHL20(2)          <---------ANAC58            --------->ANAC55(2)            ----------->TBP<---------AHL20(2)     <------------CBF   *TSS<----------DOF2<---------YAB1     --------->YAB1  <---------AHL20(2)    ------->TEIL   tttgatcatcttttacatgacgtcatcagtgttataggcccaaatataaatgggctttattaattttctaactgggccatgtatattgctttgttgttgt  756400                                                                               --------->ZAT2                                                                               <---------ZAT2                             <---------ZAT2                                    --------->At4g35610                            ------->TEIL                                <---------TOE2(2)                    --------->At4g35610                              --------->ANAC55(2)                   <-----------ARR10                                 <---------ANAC46                   <---------ARR14(2)                                <---------ANAC55(2)              *TSS --------->ARR14(2)                               <-------TEIL              --------->LBD16--------->ZAT2                       <---------ARR14(2)             <---------HSFB2a(2)                          ----------->TGA1     <---------At4g35610             --------->HSFB2a(2)                          ----------->HVH21  <-----------RAV1(2)       <----------DOF2----------->HVH21                 --------->At4g35610 <-------TEIL   <----------DOF2 --------->GLK1(2)                    --------->CCA1(2) <---------ARR14(2) ------>ZmHOX2a(1)<---------GLK1(2)             ---------->DOF2   --------->ARR14(2)   ctcctctttctttttccagagaatctgacgaagctcgaagggatttgagaaaaagaagagatgacgacgatacgtagattcagctgcaatgaccttctcc  756500                      --------->ANAC46                      --------->bZIP60(2)                    --------->AtMYB61                    <---------ALFIN1                 <---------PCF5            --------->ARR14(2)            --------->GLK1(2)            <---------ARR14(2)                                                      <----------DOF2            ------->TEIL                                                           <---------ANAC58           <---------CCA1(2)                                                       <---------ANAC58         <---------MYB52(1)                                                   --------->ATHB12        --------->LBD16                                 <---------YAB1        <---------ICU4       <---------ANAC55(1)                         <<<<<<<<<TBF1             --------->ICU4       <---------ANAC55(2)                    <---------CCA1(2)              <---------YAB1       <---------ANAC58 --------->ZAT14   <---------ANAC58            <---------ANAC46       <---------ANAC46 <---------ZAT14   <---------ANAC58            <---------ANAC58       <---------ANAC58--------->AtMYB61  <---------ANAC46            <---------ANAC58   gattcacttccgtgaatctggaccacctcactgaaacagtaatctcgtgtttcttcttcttattatctggtttcgtctgattattgctttgttttgctat  756600                               <---------ANAC55(2)                               ----------->GT1                                                <------                               <---------ANAC58                                   ----------->HVH21                               <---------ANAC58             ----------->HVH21   <---------ANAC58  <--                               <---------ANAC46      ------>ZmHOX2a(1)          <---------ANAC58  ---   ggcgattttgttgatttttgttcgaattttgtttcgtgaaacagttcaatatgtccttctacatgacctatttagcgagatggcctgactattttcatgt  756700                --------->YAB1           <------NtERF2          --------->ANAC46          ------>NtERF2          --------->LBD16         <---------ETT(1)                                                               <------ZmHOX2a(1)         --------->LBD16                                                         <---------MYB46(3)         <---------LBD16           --------->ANAC58                              <------MYB83        <---------LBD16            <---------ANAC55(2)                           <------MYB46(1)    <     <-----------HVH21             --------->ANAC55(2)                          <---------TOE2(2)   < -----RAV1(1)  <---------ATHB12    --------->ANAC58                             <---------TOE1(2)   < -------At4g35610              --------->YAB1   ---------->ID1     <----------DOF2    <---------TOE2(3) ------>At4g35610  <-----------HVH21       ------>ZmHOX2a(1)<---------YAB1     <---------MYB52(1)  <-   tgctgaaggtcccggcaatcgtgtcatgggttatagtaagtaatcctcttgttctcttcgttttgatttctttatgtcttcgttggtttaggaatttgaa  756800        --------->GLK1(2)                                 --------->ANAC46 <---------LBD16       <---------TOE1(3)                  --------->ANAC58 ---------ANAC58       <---------TOE2(3)                  --------->ANAC58                       <--- ---------ANAC46  <----------DOF2                       ---------->DOF2                          <--- ---------ANAC58  <---------DAG2                    <---------ZAT6                    --------->At4g35610 ------TEIL<---------YAB1<-------GAMYB          <---------MYB52(1)      <---------AHL20(2)       <---   attcgtggagattatgtttacttttagggttgaaacttagatgataaactgttagtgtaaaagccactattgattttttttggttatcagatggagatag  756900  Previous    Next  AGI:  At1g03140.1    Description:  splicing factor Prp18 family protein. similar to splicing factor Prp18 family protein [Arabidopsis thaliana] (TAIR:AT1G54590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22532.1); contains InterPro domain Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906); contains InterPro domain Prp18; (InterPro:IPR004098); contains InterPro domain Splicing factor motif; (InterPro:IPR003648) Range:  from: 754371    to: 756303    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g03150.1    Description:  GCN5-related N-acetyltransferase (GNAT) family protein. similar to GCN5-related N-acetyltransferase, putative [Arabidopsis thaliana] (TAIR:AT5G13780.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71298.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22531.1); contains InterPro domain Acyl-CoA N-acyltransferase (InterPro:IPR016181); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) Range:  from: 756414    to: 758612    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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