Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          --------->ANAC58                    <---------ARR14(2)                       --------->TOE2(3)--------->ANAC58                    --------->ARR11(1)                   --------->WRKY38(1)---------->DOF2                       --------->ARR14(2)                   --------->WRKY12 <---------MYB59          --------->ANAC58        ------>ZmHOX2a(1)          ------>ZmHOX2a(2)    --------->TOE1(1)             --------->ANAC46  --------->MYB59<------        <---------ARR11(3)     --------->TOE2(1)             --------->ANAC58 <-------TEIL --------->YAB1  <--------P     <----------DOF2  ------->TEIL              ------>ZmHOX2a(1)--------->ARR14(1) ->GT1  --------->ARR11(3)<---------ALFIN1             <----------DOF2      <---------GLK1(2)<-------   actggtaagtgatcttgtactttgacctcaacctcgtacctaaagccaaacactgttctttcctcgccagtttcaatagattcggtccttctctcattat  753800         ------>ZmHOX2a(1)      ------>ZmHOX2a(1)     <---------ALFIN1  <---------ARR14(2)                                    ----------->GT1  --------->ARR14(2)                                    --------->ANAC55(2) <---------ZAT2  --------->At4g35610                    <---------ANAC55(2) <---------At4g35610     <---------ARR11(3)             --------->ANAC55(1)      <---------LBD16    < --------->At4g35610     --------->ARR11(3)             --------->ANAC46        --------->MYB52(1)  < --------->ZAT2  <---------At4g35610      --------->GLK1(1)        ------>ZmHOX2a(1)   <------ZmHOX2a(1) ---ICU4 <-----------RAV1(1)     <----------DOF2        --------->ANAC58      <----------DOF2   ----- --YAB1----------->RAV1(2)    ---------->ID1            --------->ANAC58      <---------DAG2  -------   cgcagctcctcctgttggcatctcaaagatttgttctttcggtgagttccatgtgatcacgtaaaattcctctacttgtgctttacggaggagacctcct  753900                                                                                    --------->ZAT2                                                                                    <---------ZAT2                                                                                    <------NtERF2                                                                                    --------->At4g35610                                               <---------ANAC46                     <---------At4g35610                                               ----------->GT1             ----------->RAV1(2)                                          --------->LBD16                  ====================RAV           --------->ATHB12              <---------ANAC46                  --------->ZAT2          ----------->ARR10          --------->At4g35610                   <---------ZAT2     ------>NtERF2       --------->ALFIN1<---------ANAC58                --------->ANAC46     --------->LBD16   <---------ANAC58  --------->ALFIN1               <---------LBD16   <---------LBD16     <---------ANAC58  <---------ANAC58            <-----------HVH21    <------ZmHOX2a(1) ---------ANAC58       <---------ANAC46 <---------LBD16             <----------DOF2----------->RAV1(1) ---------ANAC58    <---------AtMYB61--------->ZAT2            <---------At4g35610<-----------RAV1(2) ->ZmHOX2a(1)  <------MYB83          <---------At4g35610 ----------->RAV1(2) --------->ALFIN1 ---->RAV1(2)  <------MYB46(1)       <---------ZAT2 <---------ARR14(2)  <---------At5g28300  <------ZmHOX2a(1)   gtgcttccggcgaagattggtgatggtgtgtttgggtctagctgcgggggagtgaatccaactggagcttctttcacggctggggcagcagaggaggact  754000                                                                                   <------NtERF2                                                                                   <---------LBD16                                                                                  <---------RAP2.3(1)                                                                                  <---------RRTF1(1)                                                                                  ------>NtERF2                     <---------ARR14(2)                                           <---------ERF1  <--                   <---------MYB46(3)                                            <---------ATERF1(2)                  <---------RAP2.6(2)                                            <---------RAP2.6(2)                  <---------DEAR3(1)                                             <---------RAP2.3(2)                  <---------ANAC46                                               <---------RRTF1(3)               <---------DEAR3(1)                                                <---------RRTF1(2)              --------->SPL7                         <---------ANAC58            <---------RAP2.3(3)           <------NtERF2                             <---------ANAC58            --------->ATERF1(2)          ------>NtERF2                              <---------ANAC46           --------->RAP2.6(3)          <---------LBD16                          ------>NtERF2              ----------->HVH21  <---         <---------ANAC46       <------ZmHOX2a(1)  <---------MYB46(3)       <---------ANAC58    <----         --------->DEAR3(1)<---------REM1(1)   <---------DEAR3(1)           <---------ANAC58  <------        <------NtERF2--------->ARR14(2)       --------->SPL7              --------->GLK1(2)  <-------      <---------DEAR3(1)<---------AtMYB61   ----------->HVH21       --------->ALFIN1  <------NtERF2     <---------LBD16<-------GAMYB       <---------O2<------NtERF2--------->ALFIN1<---------DEAR3(1)   ctgttttctcggcgcggatggcggttttggtgaaggagagagacttgggacggtggcttgatgagaagaggtggagtttcttgacggcggaagtagtggt  754100                               --------->At4g35610                          <---------ANAC58                          <---------ANAC58                        <---------RAP2.3(1)                        ------>NtERF2                       <---------DEAR3(1)                      --------->ATERF1(1)                    <---------RAP2.3(2)                    <---------RAP2.6(2)         --------->At4g35610   <---------At4g35610       --------->ATERF1(1)<---------ANAC46       <------NtERF2<---------LBD16      --------->LBD16<---------RAP2.3(1)     <---------ANAC58------>NtERF2     <---------ANAC58--------->LBD16     <---------DEAR3(1)<---------RAP2.3(2)     <---------bZIP60(2)<---------DEAR3(2)     <---------ANAC46<---------ATERF1(1)    <---------LBD16<---------LBD16 -----GAMYB      --------->GLK1(2)                                        ----------->GT1 ------MYB46(3) --------->ARR14(2)                                        <---------ANAC46 ----P<---------RAP2.3(1)<------NtERF2                             --------------->AGL15          <-- ---MYB46(3)    <---------GLK1(2)                           ------->TEIL--------->ZAT14           *TSS --AtMYB61      <---------ARR14(2)                         <---------CCA1(2)                      <--   tgttatggcggggctgaagattccggcggcttgagttgccatagtttcttctgttttctctgaatctttctctgtggagtaaatggatagagatgaaatg  754200                                                                                         <-------TEIL                                                                                        --------->ARR14(1)                                                                                        --------->CCA1(2)          ----------->HVH21                                                            <---------ARR14(2)        --------->At4g35610                                                            --------->ARR14(2)       <---------ARR14(2)                                                              --------->ARR11(1)       --------->ARR14(2)                                                    <---------TOE2(3)     --       --------->GLK1(2)         --------->GLK1(2)        --------->YAB1     <---------TOE1(3)     ==      <---------GLK1(2)   <---------At4g35610            <---------YAB1      --------->DAG2        == -------ANAC58            --------->At4g35610      --------->DAG2          <---------ATHB12 <-------- -------ANAC58          <--------P                 <---------TOE2(3)   ------------>CBF<---------GLK1(2)   gcttaatagaatctgacaacgagagggtagatgagaatcgaacattttgggataaggtgatcataccatttggaccaataaggttccaagattcgattct  754300                     --------->ANAC46                 <----------DOF2               <------ZmHOX2a(2)              --------->AGP1 <---------ANAC58                 ----------->RAV1(1)              <---------AGP1 <---------ANAC58              --------->ANAC58              <---------ARR14(2)                           --------->ANAC58              --------->ARR14(2)                           --------->ANAC46                  --------              --------->ARR11(3)                          ------->MYC3                <---------DOF5.7(2)              <---------ARR11(3)                          <-------MYC3               <---------WRKY38(1)     --------------->AGL15   <---------ANAC46             ------->MYC2               <---------WRKY12     <---------------AGL15  ---------->ID1                <-------MYC2               <---------WRKY45    ----------------->AGL2--------->bZIP60(2)            <---------ALFIN1         --------->At4g35610 ---->ZmHOX2a(1)------>ZmHOX2a(2)                      <---------ALFIN1          --------->MYB59 =====================HOX2a_HOX2a             <---------GLK1(1)                 --------->YAB1 ======================HOX2a_HOX2a           --------->ARR14(2)              --------->WOX13(1) -GLK1(2)    <---------CCA1(2)               <---------ARR14(2)      --------->ZAT6 --------->WRKY18(1)   cctcttacccttactagatctttaggccatgtcgttttatgagtttggatatgtttcccacatgccacataagactagacaatcaggtcaacgttttaaa  754400                <---------DOF5.7(2)               <---------WRKY38(1)                                      <----------DOF2           <--               <---------WRKY12   --------->AHL20(2)                   <---------ANAC58          <---   <<<<<<<<<<GATA-1    <---------YAB1   --------->ANAC46               <---------ANAC58         ----- ->AHL20(2)    <---------WRKY45 --------->YAB1---------->DOF2    --------->ZAT6               <------   tagacgataatacagagtcaacgttttgatacaaaaataaaaacacaacaaagcagaaaacacagtaagactagctttcgctctgagaaggcatgagccg  754500                                                                                   --------->ANAC58                                                                                   --------->ANAC58       ------>ZmHOX2a(1)                                                      <---------MYB46(3)       ----------->RAV1(2)            --------->GLK1(2)                      --------->WRKY38(1) -------GLK1(2)                  ---------->DOF2                            <---------MYB52(1) ---NtERF2                      --------->AtMYB61   --------->ANAC58       <-------GAMYB ---->LBD16           <---------YAB1 <---------GLK1(2) ---------->DOF2    <---------ANAC58 ---LBD16    <-----------------------TaNAC69(2)     --------->ANAC58      <---------ANAC58      -----   gagtctctcctctgagacctgttcacgattaccaccaaagaatctctcttcggctagcaaagactgtaagtcgcttccgttggctaagctattgaactca  754600                                                                             <---------MYB46(3)                                                                        <---------ANAC58                                                                        <---------ANAC58                                                                    <---------ANAC58                                                                 --------->ARR11(3)                                                                 <---------ARR11(3)                                                         --------->MYB52(1)  ----------->GT1                                    ---------->DOF2     ------->GAMYB   <---------ANAC46                              ----------->HVH21       <---------At4g35610   <---------AtMYB61                            <----------DOF2          <-----------GT1<---------ANAC58  <----------DOF2     --------->MYB52(1)   <---------At4g35610   --------->ARR14(2)                -- ---->MYB52(1)        <---------DOF5.7(2)  --------->At4g35610   <---------ARR14(2)      --------->YAB1   acggctttagaaggcatagttggataacgtctttgacagaaagtcatcagtcttttaactgactgaagatacttgcgagtggtttcatcgttcatgatgt  754700  Previous    Next  AGI:  At1g03130.1    Description:  PSAD-2 (photosystem I subunit D-2). Identical to Photosystem I reaction center subunit II-2, chloroplast precursor (psaD2) [Arabidopsis Thaliana] (GB:Q9SA56;GB:Q9SUI3); similar to PSAD-1 (photosystem I subunit D-1) [Arabidopsis thaliana] (TAIR:AT4G02770.1); similar to PSI reaction center subunit II [Citrus sinensis] (GB:BAF80479.1); contains InterPro domain Photosystem I protein PsaD; (InterPro:IPR003685) Range:  from: 753307    to: 754198    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g03140.1    Description:  splicing factor Prp18 family protein. similar to splicing factor Prp18 family protein [Arabidopsis thaliana] (TAIR:AT1G54590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22532.1); contains InterPro domain Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906); contains InterPro domain Prp18; (InterPro:IPR004098); contains InterPro domain Splicing factor motif; (InterPro:IPR003648) Range:  from: 754371    to: 756303    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version