Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <-------GAMYB                                                                              <---------DOF5.7(2)                                                                              <---------At5g28300                                                                       --------->ICU4                                                                     --------->YAB1                                                                     <---------ICU4   <---------ICU4                                                                     <--------HAHB4  <---------YAB1                                                             ------->TEIL <---------YAB1                                              ----------->HVH21     <---------YAB1<---------MYB52(1) <-----------GT1              --------->ARR11(3)             --------->ARR11(3) ----------->GT1    <- --WOX13(1)                   <---------ARR11(3)            <---------CCA1(2)<-----------GT1    <----   attttgccaaattgttttttttttaggcttattatcttctgtttttctgtgactctctcgttgtatcttgatcattatgttaccgttataatttctctgt  751900                                                                                      <---------AHL20(2)                                                                                     --------->AHL20(1)                                                                           <---------ARR11(3)                                                                           --------->ARR11(3)                                                                          --------->CCA1(1)                                                                          --------->RVE1(1)                        --------->ANAC58                       --------->AHL20(2)    --------->AHL20(2)                        --------->ANAC58                       <---------AHL20(2)    <---------AHL20(2)                  <---------AHL20(2)                       --------->AHL20(2)        <---------AHL20(1) --------YAB1<---------YAB1                                <---------AHL20(2)--------->TOE2(3) -----MYB52(1)<---------AHL20(2)                  <----------DOF2       --------->AHL20(2)   tactatttcaaaatttttatttattcaagcatgtactagtacaatttgatgacttttgtgtttaattaaaaaaaaaaaatctcaaaataaaatttaagta  752000                                             ---------->DOF2                                           --------->YAB1                                          <---------ATHB12                                         ------>MYB83                                      --------->MYB46(3)                                      ------------>CBF                    <----------DOF2                       --------->ANAC46 --------->WOX13(1)               --------------->AGL15                     <---------ALFIN1-------->P                          <---------DAG2                    <-------TEIL    --------->MYB52(1)                  ----------------->AG                <---------TOE2(3) <---------MYB46(2)                    ----------------->AGL1                <---------TOE1(3) <---------MYB52(2)                   <---------ARR11(3)          --------->AHL20(2)    <-----------GT1                        --------->ARR11(3)          <---------AHL20(2)   --------->AHL20(2)                     <-----------GT1             ---      --------->AHL20(2)      --------->AHL20(2)                      --------->CCA1(1)          ----      <---------AHL20(2) ------------>CBF------>MYB46(1)              --------->RVE1(1)         -----   gggctcatataattttttaaggtccacatcaatttaactaaccaatcaaaagaaaaattagcaaaatcaaaaataccttttttgttaattcaaatccaaa  752100                                                      <-------MYC3                                                      <-------PIF5                                                      ------->MYC3                                                      ------->PIF5                                                      ------->MYC2                                                      <-------MYC4                                                      <-------MYC2                                                      ------->MYC4                                                     --------->ANAC55(2)                                                     --------->ANAC46                       <--------          <-----------HVH21                          <---------TGA1a                       ==========         --------->bZIP60(2)       --------->ALFIN1  --------->O2                          ------>ZmHOX2a(1)     <------ZmHOX2a(2)    ---------->DOF2            <---------O2                     --------->HSFC1(2)    <---------ARR14(2)    =====================================bZIP_DOF               --------->HSFB2a(1) ------>DAG2            <------NtERF2              <---------ALFIN1                   <---------HSFC1(2) ----->DAG2            --------->LBD16  ----------->GT1 <-----------HVH21  --------->AHL20(2) <------ ----->DOF2          <---------LBD16 --------->ALFIN1--------->TGA1a ----------->GT1  <---------HSFB2a(1)   aaggtcgatccatgtcatcaacatgcggcaaagacaagtgtggagttaaacatccacgtgtcaaacagacatcgaaaataaacagagaagctcctacttt  752200                                         <---------HSFC1(2)                                         <---------HSFB2a(1)  --------->CCA1(2)              --------->ZAT2  <------ZmHOX2a(2)              <---------HSFC1(2) --------->ARR14(2)              --------->HSFB2a(1) --------->ARR11(3)        ---------->DOF2        --------->YAB1 <---------ARR11(3)  <---------MYB52(2)  --------->HSFC1(2) --------->AGP1    <-----------GT1    --------->LBD16 <---------ARR14(2)--------->YAB1--------->HSFC1(2)             ------------>CBF            --------- -TOE1(2)       --------->YAB1   --------->At4g35610           --------->ANAC58           ------>ZmHOX2a(1) ========HOX2a_HOX2a --------->MYB46(3)  --------->HSFB2a(1)   --------->ANAC58           =========== ----DOF2      --------->AHL20(2)<---------HSFB2a(1)         ---------->DOF2  --------->At4g35610   caagatccaaaatcccattaataacaaaccaaagaagctccgaagcctcgaataaaaacaaaacaaagcaatggcacagcatcagcattctcctcaaagg  752300                                                                 <---------ANAC58                                                                 <---------bZIP60(1)                                                                 <---------ANAC58                                                                 ====================bZIP_DOF                                                                 <---------bZIP60(2)                                                                 --------->bZIP60(1)                                                                 --------->TGA1a                                                                 <---------ANAC46                                                                 --------->O2                                                                 <---------O2                                                                 <---------TGA1a                  --------->ANAC46                               <---------ANAC55(2)                  --------->ANAC58                               --------->ANAC55(2)                  --------->ANAC58                              ----------->bZIP910(1)                --------->MYB52(1) --------->ANAC58             ----------->STF1               ------->GAMYB       --------->ANAC46            <---------TGA2(2)              <---------ALFIN1     --------->ANAC58           ----------->HVH21            ----------->RAV1(1)   --------->RAP2.6(3)         ----------->TGA1         --------->MYB52(2)     <------ZmHOX2a(2)        <---------ICU4             --------->LBD16    --------->ANAC58    --------->ARR11(3)<---------ALFIN1                 <---------LBD16      --------->ANAC58   <---------GLK1(1)  ----------->RAV1(1)            --------->ARR14(2)   ---------->DOF2 ->DOF2  <------ZmHOX2a(1)   <---------YAB1      <---------At4g35610    --------->ANAC58 ===========HOX2a_HOX2a --------->O2    <------NtERF2<---------ARR14(2) --------->ANAC58           --   ccaagagatcaggacaacacacggccacatgatcaatacggcatcgttttcagcgtctccggtgatgacgtggcaagaaagcaaggcgatagtttctctc  752400                                          <---------YAB1                                       --------->ARR14(2)                                       <---------ARR14(2)                                      <-------GAMYB               <---------ANAC46   ------------>AtMYB77          <---------MYB46(3)     <---------REM1(2)       --------->MYB52(1)      <---------ETT(2)       ------>MYB83          --------->LBD16                                                  -------       ------------>AtMYB77 <---------ANAC46                                                  <------       ------>MYB46(1)     <-----------------------TaNAC69(2)                               <--------     --------->MYB46(3)    ------>ZmHOX2a(2)                                           --------->ANAC58     <---------MYB55(2)   <------ZmHOX2a(2)                                  <---------ANAC46 ------- ----------->HVH21       --------->ARR14(2)            <----------DOF2<----------DOF2  --------->ANAC58 --------->RAV1(2)       <---------ARR14(2)--------->ATHB12       --------->REM1(1)  --------->CCA1(2)   aacctgacccaacggttgcgacgatgggatccgtagacacggttacgattggggaggctttggaggctacagctttgtctcttggagataagcctgtcga  752500                                                                                              -------                                                                                              <------                                                                                           <------NtERF2                                                                                           --------->ATERF1(1)                                                                                           <---------ZAT2                                                                                           --------->At4g35610                           --------->DEAR3(1)                                              <-------GAMYB                          <------NtERF2                                                    <---------At4g35610                          --------->RAP2.3(1)                                             <---------ERF1                         --------->At4g35610                                              <---------MYB46(3)                         ------>NtERF2                                                    <---------RAP2.3(1)                         <---------ATERF1(1)                                              <---------ATERF1(1)                         --------->LBD16------>NtERF2                                     ------>NtERF2                     --------->ANAC58   --------->MYB52(1)                               <---------ATERF1(2)          --------->ZAT2--------->RAP2.3(2)                                              <---------RAP2.3(3)          <---------ZAT2--------->DEAR3(1)                        <---------AtMYB61      <---------RAP2.6(2)        <-----------RAV1(2)--------->RAP2.6(2)                   <---------MYB52(1)      <---------RAP2.3(2)      --------->ANAC58  --------->RAP2.6(2)                     --------->LBD16          --------->ATERF1(2)      --------->ANAC46 --------->DEAR3(2)<------NtERF2    --------->WRKY38(1)            <---------DEAR3(1)      --------->ANAC58 --------->RAP2.3(1)  <---------MYB52(1)<---------LBD16        <-----------RAV1(2) -->ETT(2)--------->At4g35610          <---------ALFIN1   ----------->HVH21       --------->At4g35610 ---ETT(2)<---------At4g35610          --------->DEAR3(1) <---------WRKY38(1)    <<<<<<<<<AtERF-4 ---HVH21------->TEIL--------->ANAC46 <---------ABI4(2)   --------->ETT(2)      <---------RAP2.6(2) -->WRKY38(1)        --------->ANAC58 --------->MYB46(3)  <---------ETT(2)      <---------RAP2.3(2)   ccgtagagacgcagctgcgattcaagccgccgaaactagagccaccggtgagtctaagggtcgacccggtggtcttgcagtagcggctcaggcggctgct  752600                          <----------ID1                        <------ZmHOX2a(1)                   --------->ETT(1)                        <---------ICU4                   <---------ANAC46                        --------->YAB1                  <------NtERF2                        --------->ZAT6                 <-----------HVH21             <---------RVE1(1)                 <----------DOF2           --------->MYB52(1)                 <-----------ARR10                  <---------DAG2         --------->DEAR3(2)                   --------->ARR11(3)        <---------AHL20(2)         --------->MYB46(3)   ---------->DOF2 --------->ARR14(2)        <---------YAB1     <---------ATHB12<------NtERF2            <---------ARR11(3)      --------->YAB1            ----- -->At4g35610   --------->ALFIN1              <---------ARR14(2)     <---------YAB1             <---- ---At4g35610<---------DEAR3(1) ----------->GT1--------->GLK1(1)    --------->AHL20(2)          -----   actactaatgaacagacggtgtcggaggaagacaaagtgaatatagcagatattctcacagtaatgacatttttataattttgctttatttcgataactg  752700                                                     ----------->GT1                                                  --------->ATHB12       --------->DAG2                            --------->ICU4       <---------TOE2(3)       --------->ARR11(3)<---------YAB1   --------->YAB1        <-----------RAV1(1)     <---------ZAT6                               ------- ---->ZAT14          --------->ICU4          <---------ZAT14                                <-------- -----ZAT14          <---------YAB1          --------->ZAT14                              <---------ARR14(2) ---->At4g35610<------ZmHOX2a(1)        <---------ATHB12                                  --------->ARR14(2)   cagaaacataaggtagaggagagattattgtgggatattgaaatcaatgtagtgattgtaaatttcatattagcctagatagattagtttaagttccggt  752800  Previous    Next  AGI:  At1g03110.1    Description:  transducin family protein / WD-40 repeat family protein. similar to WD-40 repeat family protein / katanin p80 subunit, putative [Arabidopsis thaliana] (TAIR:AT1G61210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22547.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 749246    to: 751963    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g03120.1    Description:  ATRAB28 (Arabidopsis thaliana responsive to abscisic acid 28). similar to seed maturation family protein [Arabidopsis thaliana] (TAIR:AT5G27980.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76722.1); contains InterPro domain Seed maturation protein (InterPro:IPR007011) Range:  from: 752271    to: 753140    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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