Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------AHL20(2)       --------->AHL20(2)       <---------AHL20(1)       --------->ARR11(3)                                      --------->AHL20(2)       <---------ARR11(3)                                      <---------AHL20(2) <---------ANAC55(2)   --------->TOE2(3)                <-----------GT1 --------->ANAC55(1)  ----------->GT1                --------->AHL20(1) --------->ANAC55(2)------->TEIL                     <---------ARR11(3)                            <- ------>HVH21    --------->ANAC55(2)                 --------->ARR11(3)       ---------->DOF2     <-- -->ANAC55(2)<----------DOF2                      --------->CCA1(2)       --------->ZAT18         --- ---GT1--------->AHL20(1)  <---------YAB1        --------->ARR11(3)       <---------ZAT18 -----------   gacacttaatatattctttatgtatcgttatatttagaaaactttgcattagatatatattccatataaattttagtggacaaagcagtatgtagaaaaa  693100   --------->ATHB12   -------->HAHB4                                                     <---------YAB1  <---------YAB1                                                    -------->HAHB4                  <  <---------ATHB12                                                  <---------ICU4                  -  --------->ICU4                    --------->ANAC58                --------->YAB1                 -- --------AHL20(2)                   ----------->GT1                --------->ICU4                  <- -------AHL20(2)           <---------AHL20(2)                      <---------YAB1                  <- ------>AHL20(2)    <----------DOF2 --------->ANAC58             <---------ICU4                  ---- >GT1<---------WOX13(1)----------->GT1     ----------->GT1      --------->ICU4     --------->TOE2(3)-   ttaaatgattgatcatcttaaacttttgttaaattgaaacgaaaattgaaaaacaagagagtagacataatgatgatagaagaaacctcacttatcccat  693200                                                       <---------ANAC46                                                       <---------ANAC58                                                       <---------ANAC58          <---------GLK1(1)     --------->ANAC58       <---------AtLEC2                             -       XXXXXXXXXXXXXXXXXXXX>MIR861-3P              <------------CBF                                 - ---------ICU4                  --------->ANAC58 <-------TEIL                                       < -------->YAB1               --------->STY1(2)<------MYB83                            <---------AHL20(2) ------->ICU4                <---------STY1(2)<------MYB46(1)              ------>ZmHOX2a(1)     ---- --------YAB1          --------->ARR14(2)    --------->MYB59              --------->TOE2(3)     <---- --------ATHB51        <---------ARR14(2)    <---------------AtSPL8       --------->TOE1(3)   ------- ----->YAB1           <------ZmHOX2a(1)   <---------REM1(1)       <---------MYB46(3) --------->AHL20(2) ------->HAHB4    ---------->DOF2        <---------TOE2(3)  <------------CBF     <---------AHL20(2)--   aataatggatggaaatgcctcaaaggatactagctagcaacttaatgtaggtacattgcatgtattgtttgttattccttaagttaattttatctgtgat  693300      ------>ZmHOX2a(2)                      <---------ARR14(2)    --------->ARR11(3)                       --------->ARR14(2)    <---------ARR11(3)    <---------At4g35610<---------ARR11(3)   --------->YAB1    ------->TEIL            <---------ARR11(1)   <---------ICU4 --------->ANAC55(1)       <---------ARR14(1)  --------->ICU4  --------->ANAC46          <---------CCA1(2) -------->YAB1    --------->ANAC55(2)       ------>MYB46(1) ------->HAHB4    --------->ANAC58          ------>MYB83                                 <---------At5g28300 ---------ICU4    --------->ANAC58     <-----------GT1           <-----------GT1   ------->TEIL ----->YAB1 <----------DOF2         --------->YAB1           <----------DOF2    <---------ANAC55(2) -----YAB1--------->At4g35610    <---------AHL20(2)         <---------DAG2--------->AHL20(2) -->YAB1  <---------At4g35610   <---------AHL20(2)    --------------->AtSPL8   --------------->AtSPL8 ------->ICU4  <---------REM1(2)--------->AHL20(2)  <-----------GT1   <-------TEIL <-------TEIL   aataatgatctcagctttacacgtacttagcagattaattttaaccaaatcttttttctctacctttttacatccattaactacgtacattcactgccat  693400           <---------ARR11(3)    <<<<<<<<<TBF1           --------->ARR11(3) <<<<<<<<<TBF1         <---------ARR11(3)<<<<<<<<<TBF1       ------>ZmHOX2a(1)    --------->LBD16      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ANAC58     <<<<<<<<<TBF1  <<<<<<<<<TBF1     --------->At4g35610   --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ------->GAMYB  <<<<<<<<<TBF1<------------------------ANAC81--------->HSFB2a(2)   --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------At4g35610            <---------At5g28300  --------->MYB46(3) <<<<<<<<<TBF1  <<<<<<<<<TBF1  <<<<<<<<<TBF1                       <-----------GT1 >>>>>>>>>>AtWER<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------At4g35610  --------->CCA1(2)   <-----   tacaaccgcaagagctcttcttcttcttcttcttcttcttcttcttctccttcttcttctgctacgagaatagagagagatgggacttgttacagtcgga  693500                    ---------->DOF2             <-----------HVH21                   <------ZmHOX2a(1)           ------->GAMYB            <-----------HVH21                  --------->AtMYB61           <----------DOF2                     --------->YAB1               <-----------GT1         <---------ZAT2                       --------->MYB46(3)   --------->YAB1         --------->ZAT2          <---------ANAC58                  ----------->GT1         <---------At4g35610     <---------ANAC46       --------->ANAC58 --------->ARR11(3) -NtERF2 --------->At4g35610     <---------ANAC58       --------->ANAC58 <---------AHL20(1)        --   gaattgaagccagctttcacaggaaagagagggtttcgtctgaattcaaccatcagacatgcctctgaatggtaatatatactctgtttcaaaaaccagt  693600                         <---------------AGL15                         --------------->AGL15                        ----------------->AGL3                        <-----------------AGL2                ------>MYB83           <-----------GT1        --------->YAB1  ----------------->AGL2       <---------YAB1   <-----------------AGL3    --------->ICU4   <---------GLK1(1)     --------->GLK1(2)  <-----------GT1    --------->GLK1(1)    <---------GLK1(2)                    <---------YAB1   ----- --------->GT1  ------>MYB46(1) ----------->GT1                        <----------DOF2   <-----------HVH21   tttgtaactattatcaccaaatgaaatccaaatttagtaacaacgattcttgtttttttttttgcattcacatctttgtttttgataaaactgtcagaaa  693700                                                     ------->TEIL                <----------DOF2                      --------->ARR14(2)      <---------AHL20(1)                             --------->GLK1(2)      --------->AHL20(2)                             <---------ARR14(2)   <---------ANAC58      <---------AHL20(2)    --------->YAB1      ----------->GT1           <---------ANAC58<---------ZAT6 ----->DOF2  ---------->ID1<---------YAB1       <---------ANAC46---------->DOF2 ---------->DOF2   aagactaaaaaatttgttctttctgaagaattatagcaatcttgtatgtgatgtgaatctgtagccaaaagtcatttcttgttaaagtcttactgttcat  693800                                                        --------->ZAT6                                                   --------->TOE2(3)            <-----------GT1                      <-------TEIL       <--------ATHB1                            --------->SPL7       <---------ICU4                          --------->LBD16       --------->ATHB51                      --------------->AtSPL3       --------->YAB1                        --------------->AtSPL8       --------->AHL20(2)                  <---------ARR14(2)             <---------AGP1      --------->ICU4                       --------->ARR14(2)          >>>>>>>ZML2          ---------      <---------ATHB12                    --------->GLK1(1)    ----------->RAV1(2)         ----------      <---------ATHB51                    <---------GLK1(1)    <---------At4g35610 --------->ATHB12 <   cgaaaccaataatttctccatcttattttgtatatatgtggaacatatccgtacattaacacttcatctggttctagttctgtcttcatttgaaaaagct  693900                                     <---------AHL20(2)                                     --------->AHL20(2)                <---------YAB1             <----------DOF2    --------->GLK1(2)                    <---------------AGL15          --------->GLK1(2)     ------->TEIL                         --------------->AGL15   <---------ETT(2)      ----------->RAV1(2)                      --------->ZAT6   --------->ETT(2)  <-----------HVH21                          <-----------GT1         <---------At5g28300 >DAG2    <---------ARR11(3)   <---------CCA1(2)           --------->AHL20(2)          <-----------GT1 >DOF2 ----------------------->TaNAC69(2)               <------ZmHOX2a(1)         --------->AHL20(2)< ---------REM1(1) <---------AtLEC2 <----------DOF2   <---------LBD16<-----------------AGL3       <---   tgatgtagacataatcttttacatgtcccctgtgaatctttaaatgtctctaaaaccaggaataaataacactatttttggcgataaattcactgtttcg  694000  Previous    Next  AGI:  At1g03010.1    Description:  phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT2G47860.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74119.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22403.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210) Range:  from: 693480    to: 696382    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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