Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  ------->GAMYB                                   --------->ANAC58                                   --------->ANAC58                                <------ZmHOX2a(2)              --------->ARR14(2)                               <---------ARR11(3)              <---------ARR14(2)                               --------->ARR11(3) <------ZmHOX2a(2)                         ---------                             <---------YAB1    --------->MYB46(3)   <----------DOF2         ---------                         --------->TOE2(3)--------->ANAC58 --------->DAG2                   ---------                       <---------ATHB12   --------->ANAC58---------->DOF2                 ---------->DOF2   ttgctaattttgtttccaagtttcaaacattaagatcaagaaactagcaacgatcagacaaaaagtatcccttttaaaattactagcgactggaaagtaa  657700                                                                 ---------->DOF2                                                              --------------->AGL15                                                              <---------------AGL15                                                             ----------------->AGL1                                                             ----------------->AGL2                                                             ----------------->AGL3                                                            --------->At4g35610                                                           --------->RAP2.3(3)                       --------->ANAC55(2)                --------->ATERF1(1)                       --------->YAB1                    --------->ZAT2             -------->P--------->ANAC46                  <---------At4g35610 >ANAC58   <---------SPL7                                --------->At4g35610                   ------ >ANAC58  <---------ANAC58   --------->YAB1            <------ZmHOX2a(1)                       ------ -->GT1   <---------ANAC58  <---------YAB1          <-----------RAV1(2)                     ---------   ctaaattttagggcttacccattatacataatcatacaagcgtcgcaatagaagacaggagcagccaaaaagagtaagacatagaaaacccaaaaccgac  657800                    --------->ANAC46                  --------->AtMYB61                  ----------->RAV1(1)                                                               <              --------->MYB46(3)                          ====================HOX2a_HOX2a           -             --------->SPL7                               ------>ZmHOX2a(1)                         <             ------>MYB83                             <-----------HVH21                             <             ------>MYB46(1)                      -------->P    ---------->DOF2                     < >MYB46(1) --------->TOE2(2)                     <-----------GT1===================================== >MYB83 <-----------GT1                         <---------MYB111(1)    <------ZmHOX2a(2)            < >DEAR3(2) --------->TOE1(2)           --------->ZAT6--------->ANAC46 --------->ARR11(3)          ---   tgaaacatattcacctacgaccacaaaaccattcgaatcgaactctagtacttacccgtcctctcttaaagagatcaagaccagtattgacgcacaactc  657900                                           ------>NtERF2                                          --------->DEAR3(1)                                        ------>NtERF2       <------ZmHOX2a(2)               --------->DEAR3(1)      <---------ARR11(3)              <------NtERF2      --------->ARR11(3)              --------->ATERF1(1)                                      ------  <---------MYB52(1)                 ------>NtERF2                                             ------ --------->LBD16                     <---------ATERF1(1)                                      <------ <-----------HVH21                  <---------DEAR3(1)                                       <------- ---------TGA1a<---------At1g77200  --------->DEAR3(1)                                     --------->ARR14(2) -------->TGA1a<---------DEAR3(1)  --------->ATERF1(1)                                 -------------- ---------ANAC58 --------->At5g28300----------->HVH21                                  -------------- ---------ANAC46<---------DEAR3(2) <------NtERF2                                    --------->ARR14(2) ---------O2  <---------MYB52(1)   --------->RAP2.3(1)           ----------->GT1    --------->GLK1(1) =========bZIP_DOF                <---------ATERF1(1)            <---------ANAC46   <---------ARR14(2) ---------ANAC58----------->GT1  <---------DEAR3(1)          <------ZmHOX2a(1)     <---------GLK1(1) --->NtERF2  <-----------HVH21  --------->ATERF1(1)  >>>>>>>>>TBF1       --------->MYB52(1)<---------ARR14(2)   tgccgtgagatcatccgtcggtgaatttggagacggaggcgacgacgacggagaagaagaagaggaagcgtaaacaaacagatgggaatcccaattccgg  658000                                                                               ------>NtERF2                                                                               --------->LBD16                                                                              <---------ANAC46                                                                              --------->ALFIN1                                                                              <---------DEAR3(1)                                                                             ------>NtERF2                                                                             --------->ATERF1(1)                                                                             <------NtERF2                                                                             <---------LBD16                                                                           <---------RAP2.3(2)                                                                           <---------RAP2.6(2)                                                                           <---------DEAR3(1)                     ----------->RAV1(2)                                   <---------RRTF1(2)                   <---------ARR14(2)                                     <---------LBD16   <-------GAMYB                <---------ANAC58                                          <-------TEIL     <---------MYB46(3)                <---------O2                        --------->ZAT6       --------->ALFIN1 <---------RAP2.6(2) >NtERF2        --------->O2--------->ATERF1(1)<---------ANAC58      <---------HSFB2a(2)  <---------DEAR3(1) --->LBD16      <---------ANAC58      <---------ANAC58               --------->HSFB2a(2)  <---------ANAC46 ---LBD16       <---------ANAC46      <---------ANAC58             <-------TEIL<---------MYB46(3) --LBD16       <------NtERF2<------NtERF2      <---------ANAC58<---------TOE2(3)    <---------ARR14(2) --->AG---------->DOF2 ------>ZmHOX2a(1)  --------->MYB52(2) ---------->DOF2<---------RAP2.3(1)   --- --->AGL1   <-----------HVH21  <------NtERF2<---------MYB52(1) <---------TOE1(3)<------NtERF2<-------   cgagaattgaaaagggtcgcgtctcctggtggcagccatggccttcgttgcttaactctcgagtaaaggttcgagatgcggcgggggaaatggcggttta  658100                                                  <----------ID1                                                *TSS                                           ----------->GT1                                           --------->LBD16       <---------REM1(1)                  --------->ANAC55(2)     <---------ZAT2                       <---------ANAC55(2)     <---------At4g35610                  --------->ANAC58     --------->At4g35610                  --------->HSFB2a(2)     --------->ZAT2                       --------->ANAC58           <---------DAG2                -- <---------DEAR3(1)                       <---------HSFB2a(2)        <----------DOF2       <---------LBD16 -------->HVH21--------->MYB46(3)        <---------LBD16       <-----------GT1        <---------AHL20(2) ---DOF2     ----------->RAV1(1)        --------->MYB52(1) <----------DOF2      ------>ZmHOX2a(1)  --   gcgacggagctgtagccacagccattcaattttcttctacgcttacggaaaaaaaacaaaacttttatccgctttttatttcctctgttttatttcggaa  658200                                                <---------SPL7                                               <------MYB83                                               <------MYB46(1)                                              --------->MYB59      <-----------GT1                         --------------->AtSPL8     <---------AHL20(2)                       <---------------AtSPL8     <-----------GT1                          <---------------AtSPL3                       --------->ANAC58 --------->ICU4                 --------->HSFB2a(2)--------->ANAC58                        --------->ANAC58 ------->YAB1                   <---------HSFB2a(2)--------->ANAC58                    <-----------HVH21 ------->AHL20(2)  <----------DOF2        <---------YAB1       ---------->DOF2      <----------DOF2   ataatatttaacttccaacttctttgaatattatctagaaacttatatttggtacgaattagacccaaagaaaaaaacattgttgactttgtcacacaat  658300                                                                               <---------TOE2(3)                                                                        <------MYB46(1)                                                                        <------MYB83                                                                       <---------MYB46(3)                                                                       <---------AtMYB61                                                                   <XXXXXXXXXXXXXXXXXXXXXMIR856                                                               <---------ZAT2  <---------TOE1(3)                                                               --------->At4g35610                                                               <---------At4g35610                 --                          <----------ID1                       --------->ZAT2  <---------YAB1      <-                     <------ZmHOX2a(1)                --------->YAB1  <--------P       --------->ATHB12                   --------->MYB59      --------->ATHB12 <-----------ARR10<---------ZAT6 <---------WOX13(1)   gacacaaggtttggaatcgattaggaaaacgaagaagattagtgatttgatgagtagcataactaagctggagttggtgttaagattagtgattgatgag  658400                                 <---------YAB1                                <---------AHL20(2)                                --------->AHL20(2)                                       ---------->DOF2       ------>MYB83         <---------RVE1(1)                                     <---------AHL20(2)       ------>MYB46(1) <---------ANAC46                                           --------->AHL20(1)     <---------MYB46(2)----------->GT1        <---------YAB1                      --------->AHL20(2)     <---------MYB59 --------->ZAT14 <-----------GT1                             --------->AHL20(2) ------->At4g35610   <---------ZAT14 --------->MYB52(1)          ----------->GT1 <---------AHL20(2) --------At4g35610  <---------ZAT6--------->YAB1 --------->GLK1(2)           <---------YAB1       ---   tagcagacctaacttggagttagtgttgtgatattttaataactgaatgtgattctgtctaactatgaagtttaatattctaattaaattgcaaagcatt  658500                                                                     <---------ICU4                                                         --------------->AGL15                                                         <---------------AGL15                                                     <----------DOF2 --------->ATHB51                                                   --------->ZAT2    --------->YAB1                     ------>ZmHOX2a(1)             <---------ZAT2    <--------HAHB4                     ====================================================MADS_MADS                     <---------------AGL15         <---------At4g35610       ------->GAMYB<-----------------AGL1    --------->TGA1a       --------->ICU4       =================================================MYC_MYB     --------->AHL20(2)         <-----      --------->MYB46(3)                      --------->ANAC58    --------->YAB1              -------     <<<<<<<<<<<<WRKY18     ----------->GT1   --------->ANAC58 --------->YAB1           --------->YAB1   <---------WRKY38(1)<<<<<<<<<<<<<<<<<LFY    ==================bZIP_DOF         <----------DOF2   -- ------->DOF2 <---------ARR11(3) --------->ICU4    --------->At4g35610       <---------WRKY12 <------   aaaagtcaacagtcaatttcttccttacaatggcaaaaatgaagtctcaagtcagctttcaaaaattagaataattaagtcaactttcaagaatgagatc  658600  Previous    Next  AGI:  At1g02910.1    Description:  LPA1 (LOW PSII ACCUMULATION1); binding. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39980.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR2 (InterPro:IPR013105); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 655577    to: 658148    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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