Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                   <-                                                                                                   --                               -------->P                                                          --                            <---------ATHB12                                                   <-----     <---------YAB1   <-----------GT1                              --------->ZAT14          ---------   <---------ICU4  <---------ICU4                                  <---------ZAT14      ---------->DOF2   --------->YAB1 <---------AHL20(2)                        <---------YAB1             --------->AHL20(2)  --------->ICU4  <---------AHL20(1)                    <----------DOF2                <---------AHL20(2)  <---------YAB1  --------->AHL20(2)                 --------->ARR11(3)        <---------YAB1  ------ ------>ARR11(3)  --------->AHL20(1)                 <---------ARR11(3)     --------->ICU4  <-------- ---ICU4       --------->AHL20(2)------->GAMYB   --------->TOE2(2) --------->ZAT18------->TEIL-------   gaccatgattattcacataaaatattacaaatcaacccaatttgatcaaaacataggtctttactattgtgcagagacatgatgaatatttaaagattta  653900 -------->AHL20(2) ---------AHL20(2) --------AHL20(2) ------->YAB1                                                                                   ----- ------->AHL20(2)                                          <---------ANAC58                     <---- ----AHL20(2)                                              <---------ANAC58            --------->ANAC58 >ARR11(3)             ---------->DOF2     <------ZmHOX2a(2)         <------MYB46(1)   --------->ANAC58 --->AHL20(2)        <------ZmHOX2a(2)    --------->ARR11(3)         <------MYB83     ------->GAMYB -ARR11(3)       <---------WOX13(1)       <---------ARR11(3)   <---------ANAC46 ------>ZmHOX2a(1) -->AHL20(2) <----------DOF2            --------->ICU4  <----------DOF2       ----------->RAV1(2)   attaaaatgaaaacgcttgatggatcaaagaaaacataagtcaagatcaagaagatagctttcttgtttgtaggtctaactcctgcaacgagcaattttg  654000                           <---------At4g35610                           --------->At4g35610                           --------->GLK1(1)            ------->TEIL                <---------ANAC58                           --------->ZAT2              <---------ALFIN1             <---------ANAC58              <---------TOE2(3)                      --------->ANAC58       <---------ALFIN1             --------->YAB1<---------ZAT2  ----------->GT1             --------->ANAC58    ------->GAMYB          <---------GLK1(1) <---------YAB1     --------->HSFB2a(2) <---------ANAC46   --------->MYB46(3) ----------->RAV1(2)  --------->YAB1 <---------ALFIN1 --------->ZAT18 ---->At4g35610 <------ZmHOX2a(1)   ----------->HVH21--------->ANAC46  --------->ANAC46 -----At4g35610--------->ICU4    <---------MYB52(1)  --------->ANAC58  --------->ANAC58   ctgcaaccacgactataaggattagcctgagctccgttctgacaattgtaataagacgcacctcttcttgaacaaggcacactgttccgtttcaaagact  654100                                                                            --------->ANAC46                                                                       --------->ARR14(2)                                                                    <------NtERF2                                                                 ------>NtERF2                                                                 --------->ABI4(1)               <---------AtMYB61                                --------->ANAC46             <-----------RAV1(1)        =============================HOX2a_HOX2a         ------->TEIL                   ------>ZmHOX2a(2)       <---------ALFIN1      --------->ANAC55(2)              <---------GLK1(1)        --------->DEAR3(1)                ---  <---------ANAC58                    <---------ARR11(3)      ------>ZmHOX2a(1)                  <---  <---------ANAC58   <------NtERF2    --------->ARR11(3)<<<<<<<<<TBF1  <---------ARR14(2)<-----------   gatagcttatgtattttgtggtcgccaatattcttctattgatctctgagtccatttcttcttcctccgccccgatacactctgctattgaaccgtggca  654200                                                           <---------ANAC46                                                          <------NtERF2                                                          <---------ZAT2                                                         ------>NtERF2                                                         <---------RAP2.6(3)                                                        <---------RAP2.6(2)                                                        --------->RAP2.6(2)                                                        <---------ATERF1(2)                                               <---------DEAR3(1)                                              <---------MYB52(1)                                             <-------GAMYB--------->ZAT2                                            --------->MYB55(2)                                            <---------MYB46(3)     --------->LBD16                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                      --------->DEAR3(1)--------->ATERF1(2)                                   --------->DEAR3(1)  --------->RAP2.6(3)                                   --------->AtMYB61   --------->ATERF1(1)                                   <---------ALFIN1   --------->ZAT2 <---------DEAR3(1)                                  --------->MYB46(3)  <---------ATERF1(1)                           -    --------->MYB46(3)          --------->ANAC46     <---------ARR14(2)                            -- -------->RAV1(2)               --------->REM1(1)   --------->ATERF1(1)                  <----------ID1 ---NtERF2         ----------------------->TaNAC69(2)--------->ARR14(2)       --------->CCA1(2)  ---- ------------TaNAC69(2)         <---------ALFIN1 <------NtERF2   <---------LBD16--------->ICU4  <----   gcctgaaccattgtctccagtcgtagcccatgctacaccaccgaggtcgttggcgaagccggcttggaccggaggtgaagagatgatgaagacgacgaga  654300                                                                            <---------ANAC58                                                                            <---------ANAC58                                                                       --------->ATHB51                                                                       --------->ATHB12                                                                       <---------ICU4                                                                      <---------YAB1             <---                                      <---------ANAC58                --------->ICU4        ---------                              ---------->ID1                     ----------->GT1          --------->AHL20(2) -------->TOE1(2)         <---------ANAC58                       <------MYB83         --------->ICU4 ------->YAB1             <---------ANAC58  <----------DOF2      <------MYB46(1)     <---------TOE1(3) ----->GLK1(2)          <------ZmHOX2a(1)  *TSS <----------DOF2 --------->MYB59      <---------TOE2(3) -----GLK1(2)       ---------->DOF2   <---------ANAC58   <----------DOF2<------------CBF  <----------   atcgtaagagttaagaacagagtaaaggacttgtccattttcttgcctttctttgggttcttttgtttggttattattgcttaagttaatgtttatatat  654400                                                      ---------->ID1            <---------ZAT18                          <-----------GT1            --------->ZAT18                        <------------------------ANAC81            --------->WRKY38(1)                 <---------AHL20(2)         <---------ANAC46                     <---------RVE1(1)     <---------ANAC58                         <---------CCA1(1)    <---------MYB46(3)                       <---------ARR11(3) ----TEIL<---------ANAC58            <---------MYB46(3)   <----------DOF2                           < -->TBP  <---------ANAC58--------->AHL20(2)  --------->ARR11(3)                                <----- -TBP<---------ANAC58    <---------AHL20(2)  <---------GLK1(2)                  --------->GLK1(2) <--   acatggtgagtgcgtggactcgattttttaattttgtagttgttgaagatttttttttctctttttttgttttgtttttcaaattctattttgtgttttt  654500 ---------->DOF2 ---------AHL20(2)        --------->GLK1(2)                                                  <------- ----YAB1      <---------AHL20(2)                                                 <----------DOF2 -------YAB1   --------->AHL20(2)                                      <-----------GT1       --------   attaaaagtttcagtatttatttagaagaatatgagacatagcatgacaataacttgttgattcgaatactagtaacattttctctttgttatattaaaa  654600                                                        <---------AHL20(2)                         <-                                               <---------YAB1                                <-------         <-----------GT1                     <-----------GT1                             <---------ANAC58 --AHL20(2)                               ----------->GT1                                <---------ANAC58 ->AHL20(2)     --------->GLK1(2)  <---------GLK1(1) <---------GLK1(2)                 <-----------GT1   ttttgaaaatttaacgagcttctgtttagaatttttgatttctgtagttacaatagaattttttgaacttacattatagtttcgaaattttacttgtgtt  654700                                                                        <---------AHL20(2)                                                                        --------->ATHB12                                                                       <---------AHL20(2)                                                                       --------->AHL20(2)                                                                      <---------YAB1                                                                   --------->ICU4                                                                   <---------YAB1                                                                 <---------ICU4                              --------->ZAT14                    -------->ATHB1                            --------->At5g28300                  --------->ATHB51                           ----------->GT1                       -------->HAHB4                       ----------->HVH21                         <---------AHL20(2)                     <---------O2                                <--------HAHB4                     --------->TGA1a         --------->YAB1      --------->YAB1                     <---------TGA1a         <---------ICU4     --------->ICU4                     --------->O2           --------->ICU4      <---------ATHB51             <-------              --------->GLK1(1)             <---------YAB1      <---------YAB1               --------              ---------->DOF2 <---------ZAT14-------->HAHB4  --------->AHL20(2)             --------- ----------GT1=================bZIP_DOF --------->AHL20(2)   <---------AHL20(2)             <-------- --ZAT6      --------->ARR14(2)   ----------->GT1         ----------->GT1          --------->ATHB12   atttcggtattaacagaaatgccacttgacagtgaaatgaaaaaaaatgattatgcaaattagttaattattattaattggagaattgttgggagtggtt  654800  Previous    Next  AGI:  At1g02900.1    Description:  RALFL1 (RALF-LIKE 1). similar to RALFL22 (RALF-LIKE 22) [Arabidopsis thaliana] (TAIR:AT3G05490.1); similar to RALF precursor [Nicotiana tabacum] (GB:AAL26478.1); contains InterPro domain Rapid ALkalinization Factor (InterPro:IPR008801) Range:  from: 653765    to: 654343    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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