Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <---------WOX13(1)                                    <---------ANAC58                                    <---------ANAC46                           --------->ARR14(2)      --------->At4g35610                           <-----------ARR10   --------->ARR14(2)  ----------->HVH21  <---------At4g35610       <---------ARR14(2)                                ---- --CCA1(1)           --------->At4g35610<---------GLK1(2)                                     ------- --RVE1(1)        ------>ZmHOX2a(1) <---------ANAC58                                         <------- -ARR11(3) <----------DOF2 <---------ARR14(2)  ------->TEIL  <---------ATHB12    --------->GLK1(1) >ARR11(3) ----------------------->TaNAC69(2) <---------CCA1(2)                  <---------GLK1(1)   ttgtctgacaactctttctcctcagcacaaatctccttgcttgattctgtatctgcttaacaaatcaaaaacttcaaaatcagatttctctaagagcaac  626300                                                                                                   --                                                                                                   --           --------->ANAC58                                                                      ----     --------->ARR11(3)                                                                          ----     <---------ARR11(3)                                           ---------->DOF2                ----    <---------CCA1(2)     <-----------GT1                       <---------YAB1                 ------ ------>DOF2          <----------DOF2                  --------->ANAC58                        <----- ---->RAV1(1)   ---------->DOF2                        --------->ANAC58                       ------- ---ID1    --------->ANAC58      --------->ANAC46 <-------TEIL--------->YAB1                  -------   aaagacatatctcaaggcaaaagacttttaactacaaaccaattcaacaaggttcttacgcctataatgaaagaacaatgtcaaattttggagagaacca  626400                                                                                   <---------ICU4                                                                                --------->YAB1 ------->TOE2(3)                                                                <--------HAHB4 ----->GAMYB                                                                   <---------YAB1 -->MYB46(1)                                      --------->TOE1(3)     <---------ANAC58 ---->P <---------ZAT6                            --------->TOE2(3)     <---------ANAC58 -->MYB83                                    <---------MYB52(2)        --------->ZAT2 --->AtMYB61                            ------>ZmHOX2a(1)              --------->At4g35610     <----- ----MYB111(1)                    ---------->ID1-------->P             <---------At4g35610  --------- -->DEAR3(2)                 --------->ARR14(2)<-----------GT1         <---------ZAT2       --------- -->MYB46(3)           <-----------GT1 --------->TOE2(3)       <---------YAB1  --------->ICU4--------   accctagttagtgatcaaacatgttttgccatatttgtcttcctaaaactaaccttacaatttctatgtttgtagctggctataattaagacgactgacg  626500                                                                                             <-------                                                                         ------>MYB83       <--------                                           --------->DAG2                ------>MYB46(1)  --------->ARR14(2)                                   --------->At4g35610               ------->TEIL         <---------ARR14(2) ----ANAC46                        --------->GLK1(1)        --------->ANAC46        --------->ANAC46 -->HVH21               <---------ZAT6    ---------->DOF2   --------->ANAC58        --------->ANAC58 -->TGA1   --------->HSFB2a(2)  <---------HSFC1(2)          --------->ANAC58        --------->ANAC58 ->MYB52(1)<---------HSFB2a(2)  --------->HSFC1(2)    <-----------HVH21<---------MYB59XXXXXXXXXXXXXXX   gagaatgacattactcgaacaatatagtcttagaagcatctccataaagttggaatggtcacaggcaaatgaacctatctaacaacaagccagtttcgga  626600        <---------AHL20(2)       --------->AHL20(2)       <---------AHL20(1)                                              ----------->GT1      --------->ICU4                                         <---------YAB1                         < --------->ANAC55(2)                 <----------DOF2     <---------ARR11(3)                         - ----------->GT1                    <---------ANAC58     <---------GLK1(2)                      <---- <---------ANAC55(2)                <---------ANAC58   <---------TOE2(3)                      ------- --ANAC46                --------->AHL20(2)            <---------TOE1(3)                   --------->ANAC46 -LBD16<---------AHL20(2)<---------AHL20(2)     --------->ICU4    ---------->DOF2     <-----------ARR10 XXXXX>MIR826          --------->GLK1(2) <----------DOF2 --------->ARR11(3) <------------CBF  <------   gacatgtaatttttttgtttgtgagaattttttaagttgctttctttgtaatgttttaagattttgattaaagcagataattgaaacgtttcttcgccac  626700                              ----------->HVH21                             <-------MYC3                             ------->MYC3                            --------->bZIP60(1)                            --------->ANAC58                            --------->TGA1a                            --------->ANAC58                            <---------O2                            --------->O2                            <---------TGA1a                            --------->ANAC55(2)                     ----------->HVH21                    ------->MYC3                    <-------MYC3                   --------->TGA1a                   <---------O2                   --------->bZIP60(1)                   --------->O2                   <---------ANAC55(2)                   --------->ANAC58          ---------->DOF2   <---------ANAC55(2)          ============================bZIP_DOF        <---------AHL20(2)  --------->ANAC46              --------->ANAC58                     ------        ----------->TBP   <-------------DYT1              --------->ANAC58                     <----- ---------ZAT14    <---------TGA1a                       --------->SPL7                    --------->LBD16 -------->ZAT14    --------->ANAC55(2)                 <---------SPL7                     <---------ANAC58 -----ALFIN1       --------->ANAC46                <---------CCA1(2)     --------->TOE2(3)<---------ANAC58 ---->RAV1(1)      --------->ANAC58             --------->TOE2(3)        --------->TOE1(3)<---------ANAC46 ---ALFIN1===================bZIP_DOF    *TSS<-----------GT1  ------>NtERF2              <---------LBD16   actatagtatataaaaggctcacgtgactcacgtgacgctcccttattaacctatatcgttcgccaacttcgaaaccctaaattcccaaattgcggaggc  626800                        --------->At4g35610                        ----------->GT1                    --------->MYB52(1)                  --------->MYB46(3)                ------>NtERF2     ------>ZmHOX2a(2)<-----------RAV1(2)    <------ZmHOX2a(2)------>MYB46(1)   --------->ARR11(3)-------->P <-----------GT1   <---------ARR11(3)------>MYB83                                        <---------ICU4  --------->GLK1(1) ----------->RAV1(1)               --------->GLK1(2)------->TEIL  <---------GLK1(1)--------->AtMYB61        --------->At4g35610       <---------CCA1(2) --->At4g35610 --------->DEAR3(1)        ------>ZmHOX2a(1)     --------->DAG2 ----At4g35610 --------->MYB46(3)        <---------At4g35610  ---------->DOF2   tgagagatctcaaatcgacgaccaacaggtgaattttcgcttcctctgcttcagacattcttgataaagtttgaatcttgactttggacttgtgtttttg  626900                                                                     --------->LBD16                                                                     <-----------HVH21                                                                 --------->ARR14(2)                                                                 <---------ARR14(2)                                          ------->TEIL          --------->GLK1(1)                                  <---------ARR14(2)            <---------GLK1(1)                                  --------->ARR14(2)   ------>MYB46(1)                                ----------->ARR10   <---------HSFB2a(1)                            <-                            --------->HSFB2a(2)     --------->HSFB2a(1)                            --                  --------->At4g35610<---------ANAC46  ------>MYB83 <---------ANAC58   <---------ARR14(2)       <---------TOE2(3)    <---------HSFB2a(2)   --------->GLK1(1) <---------ANAC58   <---------ARR11(3)      --------->DAG2    <---------SPL7  --------->REM1(2) ------>ZmHOX2a(1)            --------->ARR14(2)     ---------->DOF2   <---------MYB46(3) --------->SPL7----------->RAV1(2)            --------->ARR11(3)   gatttgataaaggaagaatgagcagtcgttcgagtagaaccgtgtacgtcggaaaccttcctggcgatatccgtgagagagaggtcgaagatttgttcag  627000             ---------->ID1          <-------TEIL        <---------ARR14(2)                                        --------->ANAC46        --------->ARR14(2)                              --------->YAB1        <---------GLK1(2)                               <---------ICU4     --------->AHL20(2)       <------ZmHOX2a(1)                               <---------YAB1      <---------AHL20(2)     <---------TOE2(3)                                 --------->ICU4   --------->TOE2(3)   ---------->DOF2                                   --------->YAB1--------->LBD16 --------TOE2(3)                               --------->ANAC46   --------->ANAC55(2) ------->MYB59 <----------DOF2               --------->ZAT6      <---------LBD16     <----------DOF2   taaggtaaaggattcgtctttatgctatgtaaaccttgttttcgcttacactcgataataataagtctccgtaacatttatttcttccttttgtttcagt  627100                               ------>ZmHOX2a(1)                        <---------ALFIN1                           <---------ARR14(2)                         -------->P                           --------->ARR14(2)                     --------->At4g35610                         --------->HSFB2a(1)                      <---------ZAT2                         <---------HSFB2a(1)                      --------->ZAT2                         --------->HSFC1(2)                       <---------At4g35610           -----                        <---------TOE2(3)              <---------MYB46(3)                    <-------       <---------MYB46(3)<---------HSFC1(2)------>ZmHOX2a(1)    <---------WRKY12             <-------    <-----------RAV1(1) <---------TOE1(3)  --------->LBD16    <-----------HVH21           ----------- ------->TEIL    --------->ATHB12        ----------->RAV1(2)<---------TOE2(3)    <---------YAB1 <----   atggacctgttgttcaaattgatttgaaggttcctccaaggcctcctggttatgcattcgttgaggtcagcttaccacctcttattcttgcagtgacatg  627200  Previous    Next  AGI:  At1g02840.1    Description:  SR1 (splicing factor 2); RNA binding. Identical to Pre-mRNA-splicing factor SF2 (SF2) [Arabidopsis Thaliana] (GB:O22315;GB:O22314;GB:Q39201); similar to pre-mRNA splicing factor, putative / SR1 protein, putative [Arabidopsis thaliana] (TAIR:AT4G02430.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN81258.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40004.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 626741    to: 629819    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version