Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------DEAR3(1)                                            <---------ZAT14          <---------ANAC46                                                     --------->ZAT14          <---------ANAC58           ------>MYB46(1)                   <---------ANAC46          <---------ANAC58           ------>MYB83                      <---------ANAC58          <---------AtLEC2          --------->ANAC58              <---------ANAC58        <---------ALFIN1 ----------DOF2 --------->DEAR3(2)  --------->ANAC58              <---------ANAC58  <-----------HVH21 --->At5g28300 ------->TEIL--------->ATHB12         <---------MYB52(1) <---------ANAC58 <---------ALFIN1 ------HVH21 --------->WRKY38(1)   --------->MYB46(3)   <------ZmHOX2a(1)      --------->ZAT18  <----   cactttgctcttgcatggaccggcgaaaatgactggaccagccaaaaatgttcccttaggaactagtagcgttgctggtactggactgtcacacacttgt  611900                            <---------YAB1        <-----------HVH21               --------->DAG2                         ------->TEIL     --------->TOE2(3)    <-----------GT1    <---------TOE2(3)              --------->ANAC58           --------->YAB1<-------MYC3             ---------->DOF2   ------->MYC3     <---------AtLEC2    <---------ATHB12   ------->TEIL     <---------------AGL15   <-------MYC3 ----------->RAV1(2)   --------->WOX13(1) <-------TEIL       --------------->AGL15 -----CCA1(2) --------->ANAC58      <------ZmHOX2a(2)  ------->MYC3  --------->AHL20(2)      ------>ZmHOX2a(2)   atccatgtgttcaaaaacgcctgcatgaatgttattggatcaatcgttagaatgtcacatgcattttactataaaatactcaaaaaggttatggatcgaa  612000                                                ------>NtERF2                       --------->LBD16                                            --------->ANAC46                       --------------->AGL15                                          ------>ZmHOX2a(1)                        <---------------AGL15                                  --------->HSFB2a(1)            --------->YAB1   ----------------->AGL1                   ---------->DOF2--------->HSFC1(2)            <---------YAB1<-------GAMYB               --------->TOE1(3)  --------->MYB46(3)           --------->ARR11(3) <---------LBD16          <---------DAG2          <---------HSFC1(2)           <---------ARR11(3)--------->MYB52(1)          <----------DOF2 <---------AtMYB61--------->SPL7----------->GT1  <---------MYB52(1)  ------->TEIL --------->TOE2(3)  <---------HSFB2a(1) --------->TOE2(3)   --------->ALFIN1 --------->At4g35610   aatgaaactaaactttaccttaaaagtattggtggaaccatctcctacggctccaaacttagtaatatcatagaccgtggggttaccggaattagcagcg  612100                 --------->ARR14(2)                 <---------ARR11(3)               ----------->ARR10              ------>NtERF2             --------->DEAR3(1)            <------NtERF2           --------->At4g35610           <---------At4g35610           ------>NtERF2           <---------ATERF1(1)           <------NtERF2          --------->RAP2.3(2)          <---------ATERF1(2)          --------->RAP2.6(2)          <---------DEAR3(1)          --------->DEAR3(1)          --------->ATERF1(2)         --------->ERF1         --------->SPL7         --------->ATERF1(1)         --------->RAP2.3(1)        <------NtERF2        ------>NtERF2        <---------ATERF1(1)        --------->DREB2C(1)        --------->ATERF1(1)        <---------DREB2C(1)        <---------At4g35610        --------->At4g35610       <---------SPL7       ------>NtERF2       <---------ATERF1(1)                                                       <---------YAB1       <---------RAP2.3(1)                                                   --------->TOE2(3)       <---------ERF1                                                        --------->TOE1(3)      <---------RAP2.3(2)                     --------->MYB46(3)           ------>MYB46(1)      <---------DEAR3(1)                     ------>MYB83                  <---------TOE1(2)      --------->DEAR3(1)                   <---------MYB59                 ------>MYB83      <---------RAP2.6(2)         --------->ANAC58                         <---------TOE2(2)     --------->RAP2.6(3)          --------->ANAC46                       --------->TOE1(2)     --------->ATERF1(1)          --------->ANAC58                       --------->TOE2(2)        ---    <---------ATERF1(1)           --------->AtLEC2                      --------->DEAR3(2)  <--------   <---------DEAR3(1)      <---------MYB52(1)------>MYB46(1)           ------->TEIL         <--------   --------->ANAC46   <-----------GT1 --------->ANAC58              <---------ATHB12   <---------ANAC58  <---------LBD16--------->ARR11(3)   --------->ANAC58            --------->WOX13(1)   <---------ANAC58   agaccacggcggccgccgagatattcaccattagccacgcaagaaccaaacaccaaggccattagaatcaatgaacctacgttaatattgtttgccttgg  612200              <---------MYB52(1)           <------------------------ANAC81   ------>MYB46(1)                <----------DOF2            <----------DOF2   ------>MYB83                --------->ARR11(3) <----------DOF2 --------->AtMYB61             <---------ARR11(3) <---------DAG2 <---------MYB59        <---------YAB1  <---------AHL20(2)---------->ID1                   --------->ATHB12 --->NtERF2 <---------ANAC58   <---------AHL20(1)<---------ANAC58                   <---------AHL20(2) -ANAC58    <---------ANAC58  --------->RVE1(1)  <---------ANAC58       <---------ZAT6---------->DOF2 -ANAC58    <---------ANAC46  --------->CCA1(1)<-----------GT1    ---------->DOF2  --------->AHL20(2)   cgaccaaacttcttgcgttagccatggtgataatatctttattttttttttgctttttttgttcttttaaaagagtgttaacaaatttaaaagtgatttg  612300              <---------ICU4                                             <------------CBF           --------->YAB1                                    ------>ZmHOX2a(1)          <-------TEIL                        <---------AHL20(2)    ---------->DOF2        --------->ARR14(2)                  <-----------TBP <---------ANAC46      <---------At5g28300        <---------ARR14(2) <---------ZAT6 <---------------AGL15 <---------HSFB2a(2)       <------ZmHOX2a(1)*TSS    <---------STY1(2)           --------->TOE2(3)    <-----------GT1    <------ZmHOX2a(1)<---------YAB1       --------------->AGL15 --------->HSFB2a(2)   --------->ALFIN1   ctcataggaggattcataatgtttttatagtgctagttagtatgctatttatagatttgattccttatagaaaagtattggtattacagtgtgtgattcc  612400                          --------->YAB1                 <---------WRKY18(1)                --------->WRKY12                --------->WRKY38(1) --------->MYB52(1)      <----------DOF2             <---------MYB46(3)     <-----------GT1     <---------MYB52(1)           <------------CBF  --------->MYB59           --------->At5g28300           <---------GLK1(2) <---------TOE2(2)        --------->TOE1(3)  --------->AtLEC2         XXXXXXXXXXXXXXXXXXXX>MIR863-5P               --------->TOE2(3)  --------->ANAC58        <---------ANAC55(2)  <---------TOE1(2)       --------------->AtSPL8        --------->ANAC55(2)  <---------TOE2(3)      <---------At5g28300  --------->ANAC58       <---------LBD16   <---------ATHB12          <-----------GT1      --------->WOX13(1)      -----   <----------DOF2   ------------>CBF    --------->GLK1(1)  <---------DAG2                 ----------   atcttcttttacggattgttgaccccaatcttaggtagtaacgatttccaattttaccgtaactttttttatatcaagcaaaaaaaaaaaaaaaaaagaa  612500                                                                            <---------YAB1                                                                          <--------ATHB1                                                                          <---------ICU4                                                                          <---------AHL20(1)                                                                          --------->AHL20(2)                                                                          --------->YAB1                                                                          <---------AHL20(2)                                                                         --------->ICU4                                            <---------YAB1               <---------YAB1                            --------->YAB1--------->YAB1               --------->YAB1                           <---------ICU4 --------->AHL20(2)          --------->AHL20(2)                          --------->ICU4 <---------YAB1             ------>MYB46(1)                       <---------YAB1<---------MYB52(1)             ------>MYB83                     --------->YAB1 --------->At5g28300           ------->GAMYB                    <-   --------->ATHB12 --------->ICU4 ----------->GT1               --------->MYB46(3)           <------ ---->GLK1(2)      <---------KAN4(2)<-------GAMYB               --------->ANAC58          ------>ZmHOX2a(1) >DOF2     <---------MYB46(3) <-----------GT1                   --------->ANAC58         --------->TOE2(3)   tcaattgattaagtggttgagaatgatcaatattactcggttaattataaaacagtctaaaattgcaaccaaataataatttttgtttcttcctcaaaat  612600                                         <-------TEIL                  --------->ETT(1)                                      <---------At4g35610     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      --------->At4g35610   <-------GAMYB<------NtERF2                              --------->AHL20(2)           <---------MYB46(3)                              <---------AHL20(2)           --------->MYB52(2)<-----------HVH21                            <---------AHL20(2)<---------AHL20(1)     <-----------HVH21    ------->TEIL            --------->AHL20(2)--------->ARR11(3)    <-----------RAV1(1)  <---------AHL20(2) --------ANAC46           --------->AHL20(2)  --------->AHL20(1)  <---------ICU4         <---------ATHB51 ---ICU4                  <---------AHL20(2)  <---------ARR11(3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   tatgtgtatgtgtaacaaaattttgtatatatatatatacagatgcaaaatattgttttgtttgttgattatgtcggagcgtcatagctaaattattctg  612700                                                   <---------WOX13(1)                                                <---------YAB1                 <---------TOE2(3)           --------->ICU4            --------->AHL20(2)     <---------GLK1(1) <------MYB46(1)            <---------AHL20(2)     --------->GLK1(1) <------MYB83   --------->YAB1        --------->AHL20(2)      <---------TOE2(3)--------->ATHB12  <---------YAB1     <----------DOF2<---------AHL20(2)  --------->YAB1        --------->ANAC46   <-----------GT1   taattgtcttttaaatatttatgtaaatggaattgagatttctcataaatatgattggtaatccacaaaatgataagacaattttacaggtttaccaatt  612800  Previous    Next  AGI:  At1g02790.1    Description:  PGA4 (POLYGALACTURONASE 4); polygalacturonase. Identical to Exopolygalacturonase clone GBGE184 precursor (PGA3) [Arabidopsis Thaliana] (GB:P49062); similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT3G07830.1); similar to pollen-specific polygalacturonase [Brassica rapa subsp. campestris] (GB:ABW24665.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 610391    to: 612324    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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