Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->ANAC58              <---------ARR11(3)               --------->ANAC58              <---------ARR14(2)             --------->CCA1(2)              --------->ARR11(3)            <---------ARR14(2)              --------->ARR14(2)            --------->ARR11(1)          <---------YAB1             <---------HSFB2a(1)            --------->ARR14(2)  <---------ANAC58               <-----            ----------->ARR10           <-----------GT1         <---------ANAC58 --------->At4g35610 --------->DOF2           ----------->GT1 --------->ANAC46  <----------DOF2      <---------At4g35610   tcaaaagaagaaggaagatttgtttgaaaggtttcttattttaaacgatacgcttctctcaactttgctggtttcttattgtcaactgtatgaagcctat  580200                                ----------->HVH21                              <------MYB46(1)                              <---------ANAC55(2)                              --------->ANAC55(2)                              <------MYB83                              <---------At4g35610                              --------->At4g35610                             --------->MYB52(2)                             --------->MYB55(2)                             <---------MYB46(3)                             --------->MYB46(2)                        --------->SPL7                                                              <                    <---------------AtSPL3                                                          -                    --------->ZAT6                                                                  <                  <-----------GT1                           --------->TOE1(2)                       <            <---------ANAC58 --------->MYB111(1)           --------->ZAT2                           -            <---------ANAC58 --------->MYB59            ---------->DOF2                            <-       --------->ARR14(2)    --------->MYB111(2) <---------MYB52(1)                                --       <---------ARR14(2)  <---------MYB52(1)   <-------GAMYB     <---------At4g35610              <- ----ARR14(2)<----------DOF2<---------MYB55(1) <---------MYB46(3) --------->At4g35610              --   atgaagacatatttgctttgttacagtacgttaggtgactctgaagaggccgttgtacaaaagctgggagaagacgatatcaagtccctgttcgcataac  580300 ---------ARR11(3) -------->ARR14(2) ---------ARR14(2) ---------ARR11(1)                                                                    --------->CCA1(2) -------->ARR11(3)                                                                   --------->ARR11(1) --------ARR14(1)                                                           --------->ANAC58 ---->MYB46(1)                                        ----------->HVH21     --------->ANAC58<-------TEIL --------CCA1(2)                             ---------->DOF2         --------->MYB59 <---------ARR11(3) ---->MYB83        <---------YAB1       ----------->GT1     <------ZmHOX2a(1)    ---------->DOF2   caaatcttgtagatgaagaacatgatagaaaatttgtatagatagaaaaaagagtcttgacaggacaaaattaggctcaagctaaaagatttgatacata  580400                                                               --------->LBD16                                                              --------->LBD16                     --------->ARR14(2)                      <---------HSFB2a(2)                   --------->LBD16                           --------->HSFB2a(2)                 <---------LBD16                  <---------DAG2                           <---------DEAR3(2)                --------->MYB52(1)        <------ZmHOX2a(2) <---------LBD16              <---------ANAC46        <---------YAB1              ------->TEIL  <----------DOF2                 ------>NtERF2   cttgtgtaatatgatgagcaccggatagattgtatatgaatcggatcacaaacttttccttctcccgaagaatattgagcatgaggccatggccggtttg  580500                                       <---------ZAT14                                       <---------SPL7                                       --------->ZAT14                                       --------->ZAT18                               --------->ETT(2)                               <---------ETT(2)                             <-------GAMYB                            <---------DEAR3(2)                               --------->AHL20(2)                           <---------At1g77200                               <---------YAB1                           <---------DREB2C(2) <---------ARR14(2)   ----------->GT1                   <-----------GT1    <---------ZAT6      <---------GLK1(2)  <---------AHL20(2)     <---------ANAC46     --------->DDF1 <---------LBD16<---------TOE2(3)    ----------->TBP       --     <---------ANAC58    <-----------HVH21    --------->GLK1(1)     <------MYB46(1)        <---------AHL20(2)     <---------ANAC58   <-----------RAV1(1)   <---------GLK1(1)     <------MYB83          --------->AHL20(2)   agccataccgtgagaacttagttacaatgtcggtcgactagtgtacgggtttctggtttagattatgggctggtttaatataaatgggcctatttattaa  580600                                                                      <---------ARR14(2)                                                                      --------->ARR14(2)                                                        <---------ZAT18            <---------TOE1(2)                           <---------ZAT14            <---------TOE2(2)                      <---------ZAT14   <---------CCA1(2)            <--         <---------ANAC46                          <------ZmHOX2a(2) <---------MYB52(1)      --------   <---------ATHB12      *TSS                    <---------GLK1(1)<------NtERF2  --------->YAB1   --- ---------->CBF    ------------>CBF --------->ANAC46    --------->ZAT14  --------------------->WRI1   gcccaattacttcgtatgtaatgcaatgtgcttcttctacgagagagagagagatcagtgaacaagtccccgtttcttcgttctcatcatcttcatcgcc  580700              --------->AtMYB61                                                                <-----           <---------ALFIN1                                                                    <-----          --------->MYB46(3)                                                                   <-----        ------->GAMYB                                --------->ZAT14                           ------       <---------MYB52(2)                     --------->At4g35610                             -------       --------->MYB46(3)         --------->WOX13(1) --------->At4g35610      <---------YAB1---------       --------->DEAR3(1)       <------ZmHOX2a(2)    <---------At4g35610     <-----------GT1--------- -------ARR14(2)           --------->LBD16  <---------ZAT18         <----------DOF2       <---------AtLEC2 ->DEAR3(1)--------->AtMYB61 <---------ETT(2) <---------At4g35610   <---------DAG2   <---------DAG2 ------>ARR14(2)  <---------At4g35610     <-----------HVH21        <---------DAG2    <----------DOF2   gattttgcaacgaccacctctgctactcccgtcgatcaatctacggtgagctctctgctctcactattcccttttcaattttcattccttttccatgacg  580800                                            <---------------AtSPL3                                            <---------------AtSPL8                                           <-------GAMYB                                          <---------MYB46(3)                                          --------->MYB111(2)                                          --------->MYB55(2)                                        <-------GAMYB------->TEIL                                        <---------ANAC58                                        <---------ANAC46                                        <---------ANAC58                                       --------->MYB52(2)                  <---------At4g35610                                       <------MYB46(1)<---------LBD16      --------->At4g35610 ----ETT(2)                            <---------MYB46(3)                <--------P ----bZIP60(1)                         <------MYB83<---------SPL7       <---------MYB52(1)  <-------- -----ID1         --------->TOE2(3)    --------->MYB55(2)             <---------HSFB2a(2) <---------WOX13(1) --->bZIP60(1)    <---------DAG2      <---------AtMYB61               --------->HSFB2a(2)<---------ANAC58 -->RAP2.6(3)     --------->TOE1(3)  <---------MYB52(1) --------->LBD16--------->LBD16   <---------ANAC58 -->HVH21       ------->TEIL        <-------GAMYB  --------->ZAT14   <---------LBD16    --------->ATHB12 -->TGA1   ---------->DOF2    <-----------GT1      <---------ZAT14<----------DOF2      <---------YAB1   acaaatatttggataaagaaccttattcgatttaactccgttggttgttgtactgtaccggaatacaactttccggtagctctctggttttgattgcggt  580900                     --------->GLK1(1)                    <---------GLK1(2)                 --------->ANAC58                     ---------->ID1            <--------P                 --------->ANAC58                    <-----------GT1          <---------ZAT6          --------->ARR14(2)               <---------ZAT14                 <---------STY1(1) -LBD16   <---------ARR14(2)          <---------TOE2(3) <----------DOF2    --------->STY1(1)   agaaatctagaatataggctcggaatttcattttctagttgagattacactgttttttcttttttgaaaattttcacctagggttagtatttgactcaat  581000                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              -------                     <-----------GT1             --------->LBD16 --------->At4g35610      --------->ANAC58               <------ZmHOX2a(1)                <---------LBD16--------->YAB1             --------->ANAC58         <-------GAMYB                         ----------->RAV1(2)                        --------->ANAC46        <---------DEAR3(2)               <-----------GT1      <---------YAB1   --------->CCA1(2)  <--       --------->ETT(1)              <---------AHL20(2) <---------YAB1  >>>>>>>>>TBF1   <---------ALFIN1       <---------At1g77200         <---------YAB1------>ZmHOX2a(1)   >>>>>>>>>TBF1 ----------->GT1---   tggattttgtcggtagaggaatttcacttatttttctattattttgctctcctggattttgattatcagaagaagaagaagagatgagtaacacaccagc  581100  Previous    Next  AGI:  At1g02670.1    Description:  DNA repair protein, putative. similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G05120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24011.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/RNA helicase, C-terminal; (InterPro:IPR001650) Range:  from: 576046    to: 580299    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g02680.1    Description:  TAF13 (TBP-ASSOCIATED FACTOR 13); RNA polymerase II transcription factor. similar to hypothetical protein OsI_001715 [Oryza sativa (indica cultivar-group)] (GB:EAY73868.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription initiation factor IID, 18 kDa subunit; (InterPro:IPR003195) Range:  from: 580625    to: 582310    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version