Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------RVE1(1)                                                                                 <---------ARR11(3)       ---------->DOF2                                                           --------->ARR11(3)     ------>MYB83                                                        --------->DAG2         <----     ------>MYB46(1)                         --------->DAG2             ---------->DOF2         <----    ----------->RAV1(1)              <---------HSFB2a(2)  --------->At4g35610    <---------GLK1(2)  --------->MYB46(3)     --------->YAB1     ---------->DOF2          <------ZmHOX2a(1)<-----------GT1 ------GT1--------->ATHB12           --------->HSFB2a(2)  <---------At4g35610   <---------RVE1(1)   ccaaaccaacaaagattgaaaacagaatcatatcaatttctacaaataaagtggaatcgaagcagagaagaggataaaggagagatttttacgagcagtc  515100                                                                                            <--------        --------->AtLEC2                            ==================================HOX2a_HOX2a   --------->ANAC58                               <---------ARR14(2)                        <--------   --------->ANAC58        <---------CCA1(2)      --------->ARR14(2)------------------------>ANAC81   --------->ANAC46 --------->ARR14(2)      ------->TEIL       ------->GAMYB         <--------------- <---------ALFIN1   <---------ARR14(2)   <---------YAB1     --------->MYB52(1)     --------->ANAC58 -----ANAC58        --------->GLK1(2)  --------->YAB1     <---------MYB52(2)       --------->ANAC58 -----ANAC58       <---------GLK1(2)  --------->ICU4------>ZmHOX2a(2)          <------ZmHOX2a(1)   ttgccactccatggaaacagagaatcgtcgtctcttgggaatgatgaatctcgatctgcgactaacggaagaagagtaagaggagaagccatttagggtt  515200                                                      --------->MYB55(2)                                                      <---------MYB46(3)                          ---------->DOF2             --------->ATHB12                       <---------YAB1           <---------ARR14(2)                    --------->ARR14(2)          --------->ARR14(2)                           <-------                    <---------ARR14(2)     --------->ANAC58                                --------->ATHB12 -TOE1(3)           --------->GLK1(2)      --------->ANAC58              <-----------GT1<---------ANAC55(2) -TOE2(3) <------ZmHOX2a(1)            <------ZmHOX2a(2)<---------WOX13(1) <-----------------AGL1 --- --AGL2   ====================================HOX2a_HOX2a    <---------GLK1(1)          --------->ANAC55(2)   tttggaaacagaggaatgagagaatatgaaaagggtttgcgatcgaagcaaatcggtgattggatatttggggttttacaggttttggacaagtgattga  515300                                                 <----------DOF2                                      <---------MYB52(1)                                 --------->ANAC58                                      ------>ZmHOX2a(1)                                  --------->ANAC58                                <---------At4g35610                                  ------->GAMYB          --------->MYB52(2)    --------->HSFB2a(1)                                  --------->AtMYB61         <---------YAB1         <---------HSFC1(2)                --------->ZAT6    --------->MYB46(3) --WOX13(1) <---------WOX13(1)  --------->HSFC1(2)             --------->CCA1(2)   -------->P --->ZmHOX2a(2)     --------->ZAT14  --------->TOE2(3)    ---------->DOF2   <----------DOF2<---------ARR11(3)   tcgtgttcatgttaattgctactacagacattgaagcttccttagttttgtctttggaaggaaagataagactaaaaactttagcaaccacaagaactca  515400                                                                                               xxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              *TSS                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                     <---------TOE2(3)                        xxxxxxx                                           <---------ICU4                                    xxxxxxxx                                           --------->YAB1                               --------->DAG2                            --------->AHL20(2)       <---------TOE1(3)             --------->ANAC58                    ---------->ID1        --------->ICU4                 <---------TOE2(3)  ---------              --------->ATHB12        <---------ARR11(3)              <---------YAB1   ---------->DOF2       <---------ZAT6       <---------AHL20(2)  ------->TEIL     ----------->GT1   --------->ANAC58<-     <---------ANAC46  --------->LBD16--------->ARR11(3)        --------->DAG2   ---------->DOF2   --    *TSS  <-----------GT1  --------->AHL20(2)<---------YAB1    ---------->DOF2  --------->AtMYB61  xx   aattgctgagtgttactgatttgtccgtataaaattagaagataatcatgaatttagggtttgaataaagtgattaatgaaaccaaagcaaaagcgggga  515500     <---------MYB52(1)    --------->ZAT2    <---------ZAT2  <-----------RAV1(2) xxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxx>smallRNA(s) xxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxx>smallRNA(i2)             xxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxx>smallRNA(i2)             <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxx>smallRNA(fl3)                 <---------TOE1(2) xxxxxxxxxxx>smallRNA(si3)             <---------ANAC58 xxxxxxxxxx>smallRNA(se3)              <---------ANAC46 xxxxxxxxxxxxxxxx>smallRNA(si3)        <---------ANAC55(2) xxxxxxxxxxxx>smallRNA(si3)            <---------ANAC58 <---------ALFIN1 xxxxxxxx>smallRNA(si3)                --------->ANAC55(2) xxxxxxxxxxxxxxx>smallRNA(le3)        <------NtERF2 --------->ANAC58 xxxxxxxxxxxxxx>smallRNA(si3)      <-----------HVH21--------->ANAC46 xxxxxxxxxxxxx>smallRNA(s2)       xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxx>smallRNA(se3)     <xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(se3) --------->ARR14(2)       --------->ANAC58 xxxxxxxx>smallRNA(se3)    <---------ARR11(3)     xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxx>smallRNA(fl3) --------->ARR11(3)     <---------ALFIN1 xxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxx>smallRNA(s2)<xxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxx>smallRNA(le3) <---------ARR14(2)    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxx>smallRNA(le3)    --------->GLK1(2)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxx>smallRNA(fl3)<---------ARR14(3)    xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxx>smallRNA(fl3)  ----------->HVH21 xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxx>smallRNA(le3)------>ZmHOX2a(2)  <------ZmHOX2a(2) xxxxxxxxxxxxx>smallRNA(le3)--------->CCA1(2)  --------->ARR14(2) xxxxxxxxxx>smallRNA(si3)  <---------AGP1--------->ALFIN1 xxxxxxxxxxxx>smallRNA(le3)--------->ARR14(3)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->AHL20(2) xxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------AHL20(2) xxxxxxxxxx>smallRNA(fl3)----------->ARR10 xxxxxxxxxxxxxxxx>smallRNA(i)<---------YAB1 xxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->AHL20(2) >LBD16        <-----------HVH21xxxxxxxxxxxxxxxx>smallRNA(le3)   <---------AHL20(2)            >>>>>> --------At4g35610   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <----------DOF2                  <<<<<< ------->At4g35610xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(s)                ---------- xxxxxxxxxxxxx>smallRNA(fl3)<------ZmHOX2a(2)xxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <---------AHL20(2)   tagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcatttttttaatattgtttatgttttattcaaagcc  515600                                                                                  ----------->RAV1(1)                                                                              ------>ZmHOX2a(2)                                                                             --------->CCA1(2)                                                                             <------ZmHOX2a(2)                                                                            <---------ARR14(3)                                                                            <---------ARR11(3)     ------>ZmHOX2a(2)                                                      --------->ARR11(3)   --------->ARR11(3)                                                       <---------AGP1   <---------AGP1                                                           --------->AGP1   <---------ARR14(2)                                                       <---------ARR14(2)   --------->ARR14(2)                                                       --------->ARR14(2)   <---------ARR11(3)                                                       --------->ARR14(3)  <---------CCA1(2)                                                     ---------->DOF2 >>>>>>>>>>>LFY   --------->AHL20(2)                                  --------->ANAC58            <-- <<<<<<<<<<<LFY<----------DOF2                                        --------->ANAC58 --------->MYB46(3) >DOF2<----------DOF2                                -------------->OsCBT ----------->ARR10    ------   cattggatctttattctcttttaaatatgtgtccatttagtgtgttctaccgagcgcgtttggcccgtatgaacgaaagatctgccacaacaactaaatt  515700                                                                        <-------TEIL                                                                        ----------->GT1                                                                       <--------P               <---------ZAT14                                <---------YAB1     --------->YAB1               <---------ZAT18                       <-----------GT1<---------TOE1(3)    --------->YAB1                                --------->ARR14(2)<---------TOE2(3)  <---------GLK1(2)   --------->ICU4  <----------DOF2           --------->MYB52(1)  <---------YAB1--------->ARR11(3) -------YAB1   --------->ZAT14            --------->YAB1      <---------AHL20(2)<---------YAB1 --->ICU4    <---------At4g35610        <---------TOE2(3) <---------GLK1(2)    <---------ARR11(3)   atgaaatgataatgcagtagacttttacgaagtgactaagttaagaataacagatttacagaatattattaaggttgataatatcatcaaattctttgaa  515800                           --------->LBD16                   <-----------HVH21           --------->AHL20(2)                 <-------MYC3                  --------->YAB1                 ------->MYC2           ------>ZmHOX2a(1)           <---------AHL20(2)                 ------->MYC3          --------->TOE1(3)           <---------AHL20(2)                 <-------MYC2          --------->TOE2(3)           --------->AHL20(2)                <---------ANAC58    <---------ARR14(2)             --------->AHL20(1)                <---------ANAC58    --------->ARR14(2)        <---------AHL20(2)      ----------->HVH21   --------->ANAC46   --------->AHL20(2)    <---------AHL20(1)    --------->ANAC55(2)   --------->ANAC58  --------->YAB1    --------->AHL20(1)              <------    <---------ANAC55(2)   --------->ANAC58--------->AHL20(2)  --------->AHL20(2)     <---------AHL20(2)   acaaataagtgaccaagaacgtgtcaatgcgcaattcgaatccttaaaataatatttgtgaaaataaaataaaatttagccaagtttttaatctaatata  515900                --------->ZAT6             --------->TGA2(1)             <---------GLK1(1)                               ----------->HVH21                      <             <---------bZIP60(1)              --------->ARR11(3)                                   <-           --------->YAB1               <------ZmHOX2a(1)<------MYB46(1)                       <-----          <---------YAB1               <----------ID1    <------MYB83                          ------      <----------DOF2               ---------->DOF2     --------->MYB59                       -------      <---------DAG2        --------->ZAT14   <---------ARR11(3)                          --------->At5g28300 ---AHL20(1) --------->bZIP60(1)  --------->AtMYB61   <---------MYB52(1)                 ----------->GT1   tgtcaaaactttatgatatcactacaaaactacagaccaaaaggacgagatgttcagttcggtttgacattttggttttaaaaaaaacaagtggtaaata  516000  Previous    Next  AGI:  At1g02475.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01883.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40177.1); contains InterPro domain Streptomyces cyclase/dehydrase (InterPro:IPR005031) Range:  from: 513843    to: 515404    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g02480.1    Description:  pre-tRNA. tRNA-Phe (anticodon: GAA) Range:  from: 515494    to: 515566    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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