Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                               <-----                                                                                          <---------MYB46(3)                                                                                          <---------DEAR3(2)                   ----------->RAV1(1)                                                   <---------TOE1(2)                --------->ANAC58                                                         <---------TOE2(2)                --------->ANAC46                                       <---------YAB1    <---------DEAR3(1)                --------->ANAC58                                    <---------MYB52(1)  <------NtERF2           <------ZmHOX2a(1)                                    ------>NtERF2         <---------ANAC46         --------->ANAC58                                      --------->ANAC58       --------->bZIP60(1)         --------->ANAC58                                      <---------ALFIN1       <---------ANAC58      <---------SPL7 <---------ALFIN1                          --------->ANAC58       <---------bZIP60(1)      <---------RAP2.6(3)                                    <---------ALFIN1         <---------O2--- -->TEIL--------->SPL7                                    --------->PCF2              <---------ANAC58 --YAB1<---------MYB52(1)                      <-----------GT1 --------->ANAC46     <-----------HVH21   tgtatagccgtaaggaacaagcaacactgaatcggtgttgttctcgttgttacaagatgagtcccacgccgttttgaatgcttcagtgtcgtcggtttca  506800                                                                                               <-----                                                                                           <---------MYB52(1)                                                                                         <---------DEAR3(1)                                                                                         <---------ATERF1(2)                                                                                         <---------ANAC46         --------->ABI4(1)                                                              <------NtERF2         <---------ZAT18                                                                --------->ATERF1(1)         --------->ZAT14                                                               ------>NtERF2        <---------ALFIN1                <---------MYB46(3)       --------->DAG2        --------->ABI4(2)        --------->AtMYB61              <---------MYB52(1)    <-----------RAV1(2)      <---------DEAR3(1)        --------->DEAR3(1)            <-------GAMYB        <-----------HVH21          --------->ALFIN1       --------->ANAC46              <---------ANAC58     ------>ZmHOX2a(2)        <---------bZIP60(2)     <---------ALFIN1                <---------ANAC58   <---------ARR14(2)         <---------DEAR3(1)    --------->MYB46(3)            --------->GLK1(2)     --------->ARR14(2)      ----------->HVH21    <---------MYB55(2)           <---------GLK1(2)      <---------ARR11(3)      ----------->TGA1 <--- -----At5g28300         <---------TOE2(3)       --------->At4g35610         <------NtERF2--------->ATERF1(2) ------GT1 ----------->RAV1(1)   <---------ARR14(2)    <------ZmHOX2a(1)  --------->ALFIN1--------->LBD16 ------>DEAR3(1)        <---------TOE1(3)       <---------At4g35610 --------->ALFIN1 --------->ATERF1(1)   ccgtctcccaccgcaccatactttctaacgttgtagattccgttgttgtcatctgcaggatcgtcagaaggtgagggtggcagtgacggtgccggtgagt  506900               <------ZmHOX2a(1)                                             <---------YAB1        --------->LBD16                                                    ----------->GT1      <---------LBD16                                                     <---------TOE1(3)    --------->PCF5                                                        <---------YAB1    --------->ARR14(2)                              <---------AtMYB61     <---------TOE2(3)    <---------ARR14(2)                            <----------DOF2     <-------GAMYB   --------->ATERF1(1)                           <---------ANAC58    <---------MYB46(3)   <---------PCF5                                <---------ANAC58   <---------AtMYB61   <---------PCF2                --------->ALFIN1<---------ANAC46   <---------ANAC46   --------->TCP15(1)   --------->At4g35610   <---------RAP2.6(2) <---------MYB46(3)           ------  ----------->HVH21     <---------At4g35610--------->ALFIN1      <---------AtMYB61             <----- ------HVH21<------ZmHOX2a(1)  --------->CCA1(2)<------NtERF2    --------->ALFIN1  <---------YAB1<--- --------RAV1(2)     <------ZmHOX2a(1)<------ZmHOX2a(1)       <------ZmHOX2a(1) <---------YAB1<------   cagggggacccggaggaggagtaggaggctgagagatggaggaagatggtggctttggtttagaggagtggtggttatggttattatgtttgtgtttctc  507000                                                                               <---------YAB1             <---------ANAC58                                            <---------ANAC46        <---------MYB46(3)                                           <---------ANAC58       <---------AtMYB61                                       <------ZmHOX2a(1) --------->AGL15                                           --------->TOE1(2) --------->YAB1 ----------AGL15<---------ZAT2                   <-----------HVH21   <---------ANAC58               < -------DOF2 <---------ANAC58                 <---------ANAC55(2)    <-------GAMYB                  < -----------AGL2--------->ZAT2     <---------TOE2(3) <---------YAB1 <---------MYB46(3)      <--------   tttgtggtgatggtttcgagcttcgcttagagacattaatgtgagaataagtgtcatgaaaccgaggacttggttgcgattataagtagaagttaacatt  507100              <---------ARR11(3)     <---------ANAC58                     <---------ANAC58     <---------ANAC58      <---------MYB46(3)    ----------->GT1                               ------     <---------ANAC46  <---------AtMYB61--------->ALFIN1                                     <------- ---------ANAC58       <-----------RAV1(1)<---------ANAC58                            --------------- ---------ANAC58 <----------DOF2      <---------At4g35610--------->DAG2          --------->ANAC58 <-- -TOE2(3)     --------->ARR11(3)     <---------TOE2(3)  ---------->DOF2          --------->ANAC58 ---   tttcttggcttaaaaatgtctttttttggtggtgattttgaggtgagtgtttggagaaaaaagtgtgtaagaatagaagtcgcactcactaagttaagaa  507200                                                                            <------ZmHOX2a(1)    *TSS                                                              <----------DOF2  <---------ANAC46                                             <---------ANAC58 ---->DOF2             ---------->DOF2                         <---------ANAC46 --TOE2(3)          <---------At4g35610         ----------->TBP<---------ANAC58           --------->GLK1(2) >AGL15    --------->TOE2(3)                  <-----------TBP --------->ALFIN1            <---------ARR14(2) -------HSFC1(2)    --------->At4g35610       --------->AHL20(2)  <---------ZAT18         --------->ARR14(2) ------>HSFC1(2)   ----------->RAV1(1)      <----------DOF2  <-----------HVH21           <---------GLK1(2)   agcttcttggaaatgttaatgcagcaaaagcagacaagtctggttcctttatatatactgcaaggtcgtgggcttataggaagtggaaaccgattccgaa  507300                                                                 --------->LBD16                   <-----------GT1                      --------->DAG2                <---------AHL20(2)                     ---------->DOF2                  <---------ICU4           <---------AHL20(1)                 <---------ANAC46 <---------LBD16 <----------DOF2 <-----           --------->AHL20(2)               ----------->GT1   -------->P  <---------LBD16 <---------YAB1           <---------AHL20(2)              --------->ALFIN1   --------->MYB52(1) --------->ATHB12  <-      <XXXXXXXXXXXXXXXXXXXXMIR1886.1 <-----------GT1--------->YAB1   <----------DOF2   --------->ICU4   atgttgttttcattttatttttttcaaaatatcaatttttaacaagtggtgtattgataaagcttaccgggttttttgggggtttattgattatgactgt  507400                                          <---------YAB1                                          <---------AHL20(2)                                      <---------YAB1                                     <---------AHL20(1)      <---------MYB46(3)           <---------YAB1   <---------MYB46(3)           --------->AHL20(1)         --------->DAG2                   <--------  <---------TOE2(3)             <---------AHL20(1)   ----------->GT1                       <---------ANAC58  <---------YAB1 --------->At5g28300 <---------AHL20(2)   ---------->DOF2                  <---------ANAC58 --GAMYB        ----------->GT1 --------->AHL20(2)  <------ZmHOX2a(1)                      <---------ANAC46 --------YAB1   <---------ZAT6  <---------AHL20(2) ----------->GT1 <----------DOF2   <---------At4g35610   tactatggttgtgacttactgtaaaattgcatattttattattttttattgtgaggagaaaaaagtcacctttgtgatgagctattgagcttatcgtgga  507500                                                                          <---------ANAC46                                         <---------YAB1                   <---------ANAC58                                       <---------ANAC46                   <---------ANAC58                                     <-------GAMYB                    <---------WOX13(1)           <---------ZAT14          --------->ALFIN1             --------->YAB1     <-----------GT1              <---------ANAC46    --------->YAB1--------->ATHB12  --------->YAB1 <---------YAB1   <---------ANAC58   <---------YAB1<---------YAB1                  <- -LBD16    --------->ZAT14        <---------ANAC58<---------AHL20(2)--------->ATHB51            -----   acaaaaataactctgcattgtgagtgtttttaagtagggtgttgtgagtgattttatgatagtttaagtataattggcttaaaactctgcttgaaaaatt  507600      --------->AHL20(2)      <---------AHL20(2)  <---------DAG2                       --------->ANAC46                                          ----  <----------DOF2        --------->ARR11(3)      <-----------GT1                               ------ ----------GT1           <---------ARR11(3)   <---------AHL20(2)      <----------DOF2          ------ ------>GT1 <---------HSFB2a(2)       <-------TEIL         <----------DOF2  --------->AHL20(2) ------   gttactttttaattttagaagtcttaacatctctaaaacatacaccatttttttctgttttcttttgggtttctttcattttatacaaaaaatactcaag  507700  Previous    Next  AGI:  At1g02460.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G01890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40174.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 504673    to: 507204    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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