Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->ANAC55(2)        <---------ARR14(2)                      --------->At4g35610                          <-------        --------->ARR14(2)                 --------->ANAC46                                 <--------        <---------ARR14(3)                 --------->ANAC58                              --------->YAB1        <---------AGP1  <---------ANAC55(2)--------->ANAC58                              --------->AHL20(2)        --------->ARR11(3)             --------->ANAC58                                 <---------ATHB12        --------->ARR14(3)             --------->ANAC58       <-----------GT1           <---------ATHB51        <---------ARR11(3)             --------->ANAC46     ------->TEIL            --------->MYB46(3) -MYB46(3)              <---------ANAC55(1)--------->bZIP60(2)--------->ZAT6       --------->ANAC58 -DEAR3(2)------>ZmHOX2a(2)        --------->YAB1  --------->At4g35610             --------->ANAC58 >AtMYB77<------ZmHOX2a(2)      <----------DOF2 <---------At4g35610               --------->WOX13(1)   catagtggaagatctcataaacaattaagtgtttctttcatacccaagtcatcagcaaaatgtatcactatttttaaaaattgtcaaccaataatatgtt  476600                             <---------ANAC58                             <---------ANAC58                                          <<<<<<<<<MYB98                             <---------ANAC46                                    ------>MYB83                    ------>MYB46(1)           <---------AtMYB61                  ------>MYB46(1)                    ------>MYB83            --------->ALFIN1                   <---------MYB111(2)                  ------->GAMYB           <---------ANAC58                     --------->AtMYB61               --------->MYB52(1)        <---------MYB46(3)                    <---------MYB55(2)              <---------ATHB12          --------->ALFIN1                       <---------MYB111(1)        --------->ARR14(2) <---------AHL20(2) --------->ALFIN1                 --------->MYB46(3)  <-----------GT1--------->DEAR3(2)   <-----------RAV1(1)                     --------->MYB46(3)----- --YAB1 <---------ARR14(2) <-----------GT1<---------ANAC58                   ------>NtERF2 <------ZmHOX2a(1) -AHL20(1)    --------->MYB46(3)  <---------ZAT14    ----------->HVH21 --------->MYB52(2)--------->MYB59   tgtttatccaaatccaataaccgactaatttacttgtaaactgtgggtgtggtccatgacccatgttatttgttagtgccaccaactaagttaggaaaat  476700                                                                                                 <---                                                                                      <------ZmHOX2a(2)                                                                                      --------->CCA1(2)                                                                                     <---------ARR11(3)                                                                                     --------->ARR11(3)                                                                                     --------->AGP1                                                                          <---------YAB1     <-------                                                                 ----------->GT1     <---------AGP1                        <<<<<<<<<GATA-1                  <----------DOF2<-----------GT1------>ZmHOX2a(2)                    <----------DOF2                      <---------------AGL15       <---------ARR14(2) ------>GT1         <---------DAG2          ----------->GT1     ----------->GT1      --------->ARR14(2)   gtttatacaaaaaaaaaaaaaactttatctataagagaacaattactggttaaaaatagctttacaagggaaaattacaatttagtagatctacagtttc  476800              <---------ANAC58     ------->GAMYB    --------->MYB46(3)                                                             ------------------    <------------AtMYB77                                           <---------AHL20(2)  <-----------GT1          <---------CCA1(2)            --------->YAB1        <---------YAB1 <-----------GT1    <---------AHL20(2)  --------->YAB1<---------WOX13(1)    --------->YAB1 -------DOF2  <---------ANAC58      <---------YAB1  --------->ATHB12 <-----------GT1 --GLK1(2)<---------ARR14(2)   <----------DOF2  ----------->GT1   --------->AHL20(2)   tttttaactgccgatttcgttttaaattcttatcttttacaattagaaactggataattgataatcaattttatccaattgtgataagcctaaaaatgaa  476900                                                                                         --------->ANAC58                                                                                         --------->bZIP60(2)                                                                                         --------->TGA1a                                                                                         <---------TGA1a                                                                                         --------->O2                                                                                         ============                                                                                         --------->ANAC58                                                                                         --------->ANAC55(2)                                                                                  --------->ZAT2                                                                                  --------->At4g35610            <----------DOF2                     <----------ID1         --------->GLK1(2) <---------ANAC55(2)        --------->GLK1(1)              ----------->GT1     --------->MYB52(1)     <---------ZAT2  --------->GLK1(2)           ---------->DOF2   ----------->GT1     ----------->ARR10 <------NtERF2 *TSS  --------->ARR14(2)        --------->YAB1    ---------->DOF2     <---------MYB52(1) <-----------HVH21  <---------ARR14(2)   ------------>CBF------------------------>ANAC81<---------GLK1(2)  <---------O2 ------>ANAC81    <----------DOF2    ----------->GT1    ------------>CBF  ----------->GT1============   aacaaatctgatttcttttacttttgacaatgaaaagaagagagaaaaaaaagaaaaaaacaatcggcgttagattctgtaacaagctggcacgtctctg  477000                                             <------NtERF2                   <-----------GT1          ------>NtERF2                   <---------AHL20(2)   <---------DEAR3(1)               ------>ZmHOX2a(1)       --------->SPL7         --------->HSFB2a(1)          <---------MYB52(1)         <---------HSFB2a(1)     <---------ARR14(2)    --------->ANAC58            --------->WOX13(1) <---------KAN4(1)                            -----    --------->ANAC58  <----------DOF2<---------SPL7--------->KAN4(1)                            <----    --------->RAP2.6(2)   <----------DOF2   ----------->RAV1(1)             <---------DAG2   -------- ================================bZIP_DOF  ----------->HVH21                <----------DOF2---------- ================================bZIP_DOF  --------->ETT(2)          <----------DOF2       <---------   tatcagtcgcaacgttcctattttctttctttgtcaatccgttcggcgacagaacaatccaaaaaaacattcttttagctttttctgtttcttctttata  477100    --------->ANAC46    --------->ANAC58    --------->ANAC58 ---->AHL20(1)            --------->GLK1(2)                     <----------DOF2 -----AHL20(1)         --------->ARR11(3)            --------->DAG2 ->AHL20(2)         <------ZmHOX2a(1)               ---------->DOF2 ----->AGL15  <---------ARR14(2)<-------GAMYB      --------->CCA1(2)          <-----------GT1      <- -DOF2 ---------->DOF2 <---------ARR11(3)         --------->ARR11(3)        <-----------GT1--------->TOE2(3)   tattacacacaaagcctatacaggagataatctcggttacaaaaacagagaagataaaggagaagtctttctctgatttttcaccctgaagaaccctaat  477200                                                --------->LBD16                                                ------>NtERF2                     <---------AHL20(2)                                               <---------ANAC46                  <---------YAB1           --------->ZAT14                     --------->RAP2.3(2)            <---------ARR11(3)    --------------->AtSPL8                     --------->RAP2.6(2)      <-----------GT1 --------->At4g35610               <---------YAB1                    <---------ICU4 <---------At4g35610               <---------AHL20(2)               ------>ZmHOX2a(1) ----------RAV1(2)       <---------AHL20(2) --------->ALFIN1       --------->TOE2(3)           ------   ttcaggtgagtactactctcaatccatttttttttatattattccagtgccgcatttgctagttctcttccttattacaagttattaatgggttttgaca  477300                         --------->At4g35610                  <---------DAG2                                                                  <--        --------->DAG2<---------At4g35610                <----------DOF2  <----------DOF2<---------ICU4 --->ZAT6         <----------DOF2               <---------AHL20(2)     ---------->ID1   --------->ICU4   ctcgtagcgaaaggtttgaactttatctgcttcgattgaattctctgtaatttatgaggctttgcagagttttgttctttagagtctgtaatctttgttt  477400                                                                                        <---------ZAT14         --------->ICU4                                                                 --------->ZAT14     <---------ZAT18                  <---------YAB1                                 <---------ANAC46 -------At4g35610    <---------MYB52(1)--------->ATHB12                   --------->LBD16 -----------   agcttagggcatttattgtccctgtttgttttgttctgtcttcattgttagaaaatttgggttatggaatcgaatgcgcgagtttttgagtatagtgatt  477500  Previous    Next  AGI:  At1g02370.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G01990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40131.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 474500    to: 476511    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g02380.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01960.1); similar to hypothetical protein MtrDRAFT_AC173289g6v1 [Medicago truncatula] (GB:ABN09095.1) Range:  from: 477000    to: 478971    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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