Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------ICU4                                    ------>ZmHOX2a(1)                                --------->YAB1                          <---------ATHB12                                       <---------YAB1                          --------->AHL20(2)                          <---------KAN4(1)          <---                      --------->MYB46(3)                              --------->KAN4(1)<---------YAB1                     --------->ANAC58                            --------->HSFB2a(2)<---------YAB1                     --------->ANAC58                            <---------HSFB2a(2)--------->ICU4      <-------TEIL <---------MYB111(2)                          <---------LBD16 --------->ARR11(3) --   --------->KAN4(1)------->GAMYB------>ZmHOX2a(1)          ------->TEIL        <---------ARR11(3) <-  <---------KAN4(2)--------->MYB46(3)                    <---------YAB1 --------->GLK1(2)        ---- <---------GLK1(2) <---------MYB55(2)                <----------DOF2 <---------KAN4(2)<-----------GT1   tcagaatgttcatcagggacaacaaccaataaatcctccttcgcattttctacttctttatgaatctctggaacaatctgaagataattatcagtttgat  467400                                                                                      <-----------HVH21                                             ------>ZmHOX2a(2)                       ================                                           <---------ARR11(3)                        <----------DOF2                                           --------->ARR14(3)                     <---------ARR11(3)                                           <---------ARR14(3)            <---------ICU4    ---------->DOF2                        --------->ARR14(2)         <---------bZIP60(1)  <---------YAB1                <---------MYB52(1)                    <---------TGA2(1) ------ICU4         <---------ALFIN1       <---------ARR14(2)         --------->TGA2(1) ------->ICU4  --------->SPL7  <-------GAMYB<------ZmHOX2a(2)         --------->bZIP60(1) --------YAB1 --------->ATERF1(1)          --------->ARR11(3)      ----------->HVH21------>ZmHOX2a(2) ----->YAB1--------------->AtSPL3 --------->ATHB12             <----------DOF2    --------->ARR11(3)   catgatcaaagtagccgtagccccattttagaccgttgattagacgatcttcatcacttcttgctctttctgacatcatgccctgatctttcacagcaag  467500             <-----------GT1     =====================================bZIP_DOF     <---------TGA1a     --------->TGA1a     <---------bZIP60(1)     <---------O2                                                   <---------ZAT14           <------     --------->O2                                            --------->DAG2                  <-------     --------->bZIP60(1)                               --------->ANAC58             <---------YAB1  ----------->HVH21                       --------->KAN4(2) ---------->DOF2  <---------TOE1(3)------- --------->DEAR3(2)                     <---------YAB1 --------->ANAC58      <---------TOE2(3)------- ------>ZmHOX2a(2)             ---------->DOF2     ------>MYB46(1)  --------->ZAT14 --------->ANAC46 ==============bZIP_DOF      --------->AtLEC2      ------>MYB83  ----------->GT1  <-----------GT1 ---   tgatccgacgtcgtttctccatcccaattccatgaaagcttgattattcgacctgccaagaaaaaagtagtaaactattagggtttacgatacaaatcat  467600       <---------YAB1     <---------ICU4     -------->ATHB1    <---------ATHB51    <---------AHL20(2)    --------->AHL20(2)    --------->ICU4                           --------->TOE2(3)                                   ---- --------->AHL20(2)                          <---------MYB59                                    ----- <---------AHL20(2)  ---------->DOF2         --------->TOE1(3)                                  ----- ---ICU4         --------->AHL20(2)     <---------MYB52(2)               <---------YAB1         <---- --ATHB12       --------->AHL20(2)     --------->ANAC58                --------->YAB1          <----- ->ATHB1 ---------->DOF2               --------->ANAC58            <---------AHL20(2)          ------ -->ATHB12<---------TOE2(3)       --------->ANAC58                 --------->AHL20(2)    ---------->DOF2 ------>YAB1    <---------AHL20(2)--------->ANAC58             ------>ZmHOX2a(1)     --------->MYB52(2)   tgataaattattaaagaaataaataaagagaataacaaggcaagaaacctaaactctgaaacctcctgtttaattatacttacatgttagttaaagagat  467700                                                     --------->LBD16        ---------->DOF2                              <---------HSFB2a(2)   --------->At4g35610                               --------->HSFB2a(2) ----->MYB52(1)                                     <---------TOE1(1) ---->CCA1(2)                               <---------At4g35610                                 <---- ---->GLK1(1)                          --------->GLK1(1)                                        ----- -----GLK1(1)                          <---------GLK1(1)                                     ------>ZmHOX2a(2) ----ARR11(3)                  <----------DOF2<----------DOF2                               <------ZmHOX2a(2) --->ARR11(3)               <-----------GT1 --------->At4g35610                    <---------YAB1<---   atcggagatgaaaagtttggagaagtgttttttctttagggatttcagctttgtccgagaaaatggtatcccatacgcttatgttataagagcgatcgga  467800                                                                                        --------->DREB2C(2)                                                                                        --------->DEAR4(1)                                                                                        --------->DEAR3(1)                                                                                        <---------ETT(1)                                                                                        --------->At1g77200                                                                                    <---------ZAT14                                                                                  <---------ZAT18                                                                                 <---------ANAC58                                                                                 <---------ANAC58                                                                                 <---------ANAC55(2)                                                                                --------------->AtSPL3                                                                             <-------GAMYB                                                                            --------->MYB55(2)                                                                            --------->MYB52(2)                                                    ------->MYC3            <---------MYB46(3)                                --------->PCF2      <-------MYC3            <-----------RAV1(1)                              ----------->HVH21    <---------TGA1a        <---------MYB52(1)   ------                       <-------TEIL ------>MYB83   ==================================MYC_MYB --------                    <---------At4g35610            <---------O2         --------->MYB52(2)  --------- -----ARR14(2)      <---------ZAT2  ------>MYB46(1)--------->TGA1a     <-------TEIL --------->SPL7 ---->ARR14(2)      --------->At4g35610     *TSS <---------ALFIN1   <---------MYB46(3) --------->DEAR3(2) ---ZmHOX2a(2)  <-----------HVH21  <---------ALFIN1--------->O2  --------->ALFIN1<---------ANAC46 ---   tcagatagatggtatagttgtcagctacattggtgacccacttatattgtgccacgtttcaaagtatgtgtggttcgtttgttgcgtacaccgacaacaa  467900                                          --------->YAB1                                         <---------YAB1      --------->RAP2.6(3)  <---------At4g35610 ------------>CBF          --------->At4g35610                        <----------DOF2 --->YAB1      --------->GLK1(2)        <-----------TBP            --------->ARR11(3) ---->CBF     <---------GLK1(2)  --------->ANAC46                  <---------ARR11(3)       --------- -->RAV1(1) ----------->ARR10  --------->REM1(1)        <---------bZIP60(1)         <----------DOF2 - ------>AHL20(2)        <-------TEIL----------->GT1     --------->bZIP60(1)         <---------DAG2  <   taaaacaattcggctagattctaacatacagctacacgaggttattatagacatattgatgtcatttgagttctttggaaacaatacttttttggattca  468000                                             --------->At5g28300                                      <---------AHL20(2)                                      <---------ICU4                                      --------->AHL20(2)                                  <---------ATHB51                                  --------->ICU4                                  --------->AHL20(2)                                             ----                                  <---------AHL20(2)                                            <----                 --------->ARR11(3)  --------->ICU4                                  <---------ATHB51                 --------->AHL20(1)  <---------YAB1<---------AHL20(2)                --------->AHL20(2)             --------->YAB1      <---------AHL20(1)--------->AHL20(2)                <---------AHL20(2) ------->GAMYB   <---------AHL20(1)<---------ICU4  --------->AHL20(1)         ----------->GT1 ------- >ARR14(2)  ----------->GT1     --------->YAB1    --------->AHL20(2)    --------->DAG2        <------ -------->MYB46(3)           --------------->AGL15<---------AHL20(2)   ---------->DOF2<---------ICU4 ---------MYB52(2)        <-----------GT1   ----------->GT1   <---------AHL20(2)     <---------ATHB12   caacaaacattgtaatgaaaatattgttttactaaaataattaatacagtaattaaattagtttttattttggaaaagtattgtcaaataattccattat  468100                                                                                           <---------ARR14(2)                                                                               --------->TGA2(2)                                                                              <-----------TGA1                                                          --------->ANAC55(2) <-----------HVH21                                                          --------->ANAC46   --------->ANAC55(2)                                                          --------->ANAC55(1)--------->ANAC58     <-----------GT1                <----------DOF2       <---------ANAC55(2)--------->ANAC58 ----->YAB1                         <---------YAB1        --------->ANAC58   --------->ANAC46 -----YAB1                        <---------At4g35610     --------->ANAC58   <---------ANAC55(2) -->YAB1     ------->TEIL  <---------YAB1     <-----------GT1                --------->bZIP60(2) ---ICU4 --------------->AtSPL8  <---------YAB1 <---------YAB1              <-----------STF1       <-   cacaaattcacaatgtacttaaatggattattattctgcttattgtttttatgattctatacgtaattgtcccaaaactacgtcatagtagcatatatcg  468200                                                           <-----------TGA1                                                           <-----------HVH21                                                          <---------bZIP60(1)                                               <---------WOX13(1)                                             --------->ATHB12        <-------TEIL                                          <---------ICU4  <---------ANAC55(2)                                         --------->ICU4   --------->bZIP60(1)                                  ---------->DOF2  <---------ATHB12<---------GLK1(2)                                --------->CCA1(2)--------->WOX13(1)--------->ARR14(2)      ------->TEIL         --------->ICU4      ----------->GT1<---------YAB1--------->ANAC46     <----------DOF2   ---- ---------DOF2             ---------->DOF2--------->YAB1 <-----------STF1   <---------ALFIN1     <---   actttagagtaatcttgaaattttgcacagaaagataaaagtaatcttgattaatcaataacgtcactagattcactaccactttgacacatgaacatag  468300  Previous    Next  AGI:  At1g02340.1    Description:  HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / transcription factor. Identical to Long hypocotyl in far-red 1 (BHLH26) [Arabidopsis Thaliana] (GB:Q9FE22;GB:Q9FZ26); similar to PAP3/PIF3/POC1 (PHYTOCHROME INTERACTING FACTOR 3), DNA binding / protein binding / transcription factor/ transcription regulator [Arabidopsis thaliana] (TAIR:AT1G09530.1); similar to PAP3/PIF3/POC1 (PHYTOCHROME INTERACTING FACTOR 3), DNA binding / transcription factor/ transcription regulator [Arabidopsis thaliana] (TAIR:AT1G09530.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO17337.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76246.1); Range:  from: 465718    to: 467844    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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