Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        --------->TOE2(2)                      --------->TOE2(3)                      --------->TOE1(2)           --------->ANAC58                                             <---------ANAC46            -           --------->ANAC58                                             <---------ANAC58           --        ---------->DOF2                                                 <---------ANAC58        ----- ------>LBD16  <---------At4g35610    <-----------GT1        --------->AtLEC2                -------- ----->HSFB2a(2)    ------->TEIL <----------DOF2           <---------ANAC58                  -------- ------HSFB2a(2) ------->GAMYB   <---------DAG2            <---------ANAC58 ---------->DOF2 <-------- -->ARR11(3)   --------->At4g35610   <---------YAB1xxxxxxxxxxxxxxxx>smallRNA(i)         <---------YAB1   cagaaaatggcaaaggcaactgaacctaagaccagctttattactggagccattgccattttcttgcaaatatttcttgaaagctctctgatcaatgatc  442500                                                                                                    -                                                                                                -----                                                                                                <----                                                                         --------->YAB1      --------                                                                     ------>ZmHOX2a(2)     <---------WRKY18(1)                                                                     =======================HOX2a_HOX2a                                               --------->ARR11(3)   --------->GLK1(1)     ----------- -------->DAG2            ----------->GT1      <---------ARR11(3)   <---------GLK1(1)     --------->WRKY45 -------->DOF2            <------MYB83        --------->CCA1(1)     <------ZmHOX2a(2)     --------->WRKY12 ->ZmHOX2a(2)             <------MYB46(1) --------->AHL20(2)        ========================HOX2a_HOX2a ->ATHB12          --------->TOE2(3)    ------->TEIL               <---------AGP1         --------->WRKY38(1) ->YAB1   <----------DOF2<---------MYB46(3)   --------->RVE1(1)    <---------ARR11(3)    --------->DOF5.7(2) -ATHB12------->TEIL    <--------P<---------YAB1                   --------->ARR11(3)<------ZmHOX2a(1)   gaaaagcatggactttgtaaaccctagttggtgattttgatgaatcaaatatctgattagaaaccctaagatctctgataaacttgaggacgttgaccga  442600                                                                  --------->ANAC58                                                                  --------->ANAC58 <---------------AGL15                                       <----------ID1 --------------->AGL15                     <---------ATHB12  --------->ANAC58 ---------------->AGL3                   --------->WOX13(1)  --------->ANAC58 ---->ARR14(2)                    ---------->DOF2 --------->ANAC55(2) -----GLK1(2)                  --------->ANAC58   <---------ANAC55(2) >ZAP1            ------>ZmHOX2a(1)--------->DAG2<-----------------------TaNAC69(2)               <-- >HVH21    --------->GLK1(2)   --------->ANAC58<---------MYB52(1) --------->ANAC55(2)     <---------WRKY18(1)   ttcccaatagaagaatcgtcctgttgaaaaaacaagaaaagggcaatcagttacgaattcagaacgacaagtattggataatcaaacaaacttgaccagt  442700                                                           --------->ANAC58                             <---------ARR14(2)            --------->ANAC46                <---------GLK1(2)                    --------->DAG2  ----------->GT1           <------ZmHOX2a(1) ----------->HVH21                                     < -----TEIL  <-------TEIL <------ZmHOX2a(1) --------->ATHB12--------->ANAC58 --------->ZAT6   <------ZmHOX2a(1)   ttcatggttaaacatacagtttcttaaggaggaatcgaaggcaaatgagtgacaaaaattgaagcaactacatagataacactcagagtaagcgaggact  442800                                                                                                  ---                                                                                                  ---                                                                                                  <--       <---------AHL20(2)                          <-----------HVH21                              <--       --------->AHL20(1)              --------->MYB46(3)                                       -----       <---------AHL20(1)              <---------MYB46(2)                            --------->DAG2      --------->YAB1                   --------->AtMYB61                            ---------->DOF2--      --------->AHL20(2)  --------->ANAC46       --------->DAG2                  --------------->AGL15     <---------YAB1     --------->ANAC46 ------>MYB83      <----------DOF2      ----------------->AG  <---------YAB1        <---------ALFIN1 ------>MYB46(1)   <---------DAG2       ----------------->AGL1 <----------DOF2     --------->PCF2   --------->ANAC46 <---------At4g35610   *TSS<---------------AGL15 ---------ICU4  --------->LBD16 ------->TEIL    ---------->DOF2         <----------DOF2         -----   catctttattatattgtcccgagtccccacgacgaacttcaccaaaccaaaaaagtcagcccttttccaattttctttagtttccaaaaagtgaagacaa  442900                                                                                                 <---                                                                                                 ----                                                                                             <-------PIF5                                                                                             ------->PIF5                                                                                            <--------                                                                                            ---------                                                                                            =========                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            =========                                                                                            =========                                                                                            =========                                                                                            =========                                                                                            ---------                                              <<<<<<<<<TBF1                             ------>MYB46(1)                                        ------>ZmHOX2a(2)                               ------>MYB83                                       <------ZmHOX2a(2)                                <-----------HVH21                                      <---------AGP1  <----------DOF2                  ----------->HVH21                                      <-----------ARR10                              <---------ANAC58                                      --------->AGP1  =============================================== ------>ARR11(3)                      <---------ARR14(2)                             <---------ANAC58 ------>ARR14(2)            <---------At4g35610      <---------DAG2                  <---------At4g35610 -------ARR14(2)          --------->ZAT18<----------DOF2                             ----------->RAV1(2) -------ARR11(3)     <---------ANAC46 --------->ARR11(3)                             --------->At4g35610 ---->ANAC58        <---------MYB52(1)--------->ARR14(2)          <---------AtLEC2 <-----------GT1 ------->CCA1(2)   <-------GAMYB      <---------ARR11(3)  ------------>CBF  ------------>CBF--------- ---->ANAC58      <-----------RAV1(1)<---------CCA1(2)<---------DAG2       <-----------GT1<---------ALFIN1   gataccgagaagaagtctctctgttgtgttcgctgtttcagatctttcttcttcccctttttcaattttcatgaaattaacaatttgacctgccacgtcc  443000 -------DOF2 -->ZmHOX2a(1) -TGA1a >O2<---------AHL20(2)                                                                          ----- ======================================MYC_MYB                                                  <---- >bZIP60(2)                                                               --------->ARR14(2)   <----- -O2--------->AHL20(2)                                                    <---------ARR14(2)   ------ >TGA1a  ---------->DOF2       ------->GAMYB                            --------->ANAC58       ------ =======bZIP_DOF              --------->MYB46(3)                        --------->ANAC46    <-------- ==============================bZIP_DOF                                 --------->ANAC58   <---------ATHB51 ==============================bZIP_DOF                         <---------ARR14(2)         --------->ICU4 =======bZIP_DOF         --------->ANAC55(2)              <---------WRKY38(1)              <---------AHL20(2) >ANAC58<---------AHL20(2)   ---------->DOF2 <---------ZAT6     --------->ARR14(2)         --------->AHL20(2) =bZIP_DOF          <----------DOF2          ----------->GT1 --------->MYB46(3)     <---------AHL20(2) >ANAC58--------->AHL20(2)  --------->MYB52(1)     <-----------GT1  ------>ZmHOX2a(1)    --------->YAB1   tttagattaattaaagtgttttcttttacataacagccaaaattgaagtgttataacgagtcaacaaatcctacacgatactgtattttaaaaataatta  443100                                                <---------ZAT14                                                --------->ZAT18                                              --------->ANAC46                    <---------ARR11(3)                                            <-----------GT1                       --------->ARR11(3)                                         <----------DOF2                         --------->RVE1(1)   <-----------GT1                       <---------DAG2                          --------->CCA1(1) ---->AHL20(2)                    <---------AHL20(2)                         --------->AHL20(2) -----AHL20(2)                    --------->AHL20(2)                     --------->AHL20(2) ----AHL20(2)                 <---------AHL20(2)--------->ZAT14         --------->AHL20(2) --->AHL20(2)                --------->AHL20(2) <---------ZAT18         <---------AHL20(2) --->YAB1          <---------ANAC58 <-----------GT1               --------->AtLEC2--------->GLK1(2) -ICU4             <---------ANAC58<-----------GT1             <-------TEIL --------->AHL20(2)   aaatttaacttcatcttattggcttaacattttaaatttatcacttttactccactaaaatttgattcatgaaaataaataaaaaatctttaaacagaca  443200                   <---------TOE1(3)                   --------->DAG2            --------->ANAC58            --------->ANAC58                                                           <---------AHL20(2)            --------->ANAC46                                                           --------->AHL20(2)          <---------ALFIN1                                                         --------->ICU4         --------->ZAT14                                    <---------ANAC58      <---------RAP2.6(3)         <---------ZAT18       --------->ARR11(3)           <---------ANAC58      --------->At5g28300         <---------ZAT14       <---------ARR11(3)     <---------YAB1             ----------->GT1       <---------At4g35610   --------->ICU4    --------->TOE2(3)                 --------->RAP2.6(2)       --------->At4g35610 ---------->DOF2   <-----------ARR10                   --------->RAP2.3(2)     --------->ANAC46  <-------TEIL          <---------ARR14(2)                  <---------ANAC55(2)-    ---------->DOF2<---------TOE2(3)        <---------CCA1(2)   <----------DOF2  --------->ANAC55(2)<   aaactatacagcacactccataaggttcgtaaagatgtctcattgcaaatctcaatctcattgcttctttacatttacaagagccgtaattaaacaaaat  443300                                                                      --------->LBD16                                                       --------->ARR11(3)                                                       <---------ARR11(3)                 -----------                                                       --------->AHL20(1)--------->RAP2.6(2)                                          --------->ANAC58            ------>NtERF2       <----------DOF2                                          --------->ANAC58            --------->ANAC46    <----------                               --------->SPL7        <---------ARR14(2)  ----------->RAV1(1)                              <<<<<<<<<SPL5    --------->ATHB12   <-----------GT1<----------DOF2<----              <---------YAB1  <<<<<<<<<SPL1   <---------YAB1 <---------YAB1      ------>ZmHOX2a(1)     ---------->DOF2          <<<<<<<<<SPL4 --------->YAB1 ----------->GT1 <---------ALFIN1     ----- -------->At4g35610        <---------------AtSPL8 ------>ZmHOX2a(2) <---------LBD16      <----------- ---------At4g35610<---------ZAT14   <----------ARF1 --------->ARR14(2)------>NtERF2    <---------At4g35610   ttagctacaaagcattttgactggagagaattgtacggtgagacaagcatgatcggatatattgtaattctccggccacaatcctttctctgcttcttgt  443400  Previous    Next  AGI:  At1g02260.1    Description:  transmembrane protein, putative. similar to transporter, putative [Medicago truncatula] (GB:ABE87631.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49450.1); contains InterPro domain Divalent ion symporter; (InterPro:IPR004680) Range:  from: 440441    to: 442877    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g02270.1    Description:  endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein. Identical to Uncharacterized calcium-binding protein At1g02270 [Arabidopsis Thaliana] (GB:O81916;GB:Q940T7); similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G54130.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO48554.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73791.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Endonuclease/exonuclease/phosphatase (InterPro:IPR005135) Range:  from: 443149    to: 446235    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version