Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <------------CBF                                                                       --------->ATHB12                                                                       -------->ATHB1                                                                       --------->ATHB51                           <---------WRKY18(1)                     <-----------------AGL3                      --------->ARR11(3)                      <---------ICU4             <----------DOF2         --------->LBD16  <-----------RAV1(1)      --------->At4g35610 --------->WRKY38(1)*TSS     --------->ALFIN1<---------YAB1 --------->DOF2       <---------ARR11(3) --------->AHL20(2)   --------->ATHB51 ----------->GT1    <--   ttgaaaggagatgagcttgatggagatgttgactggtccctgaataaatgaaaaatgtgttgcattatttctattattgagaagaaaaaaaccaggcatt  414700                                                                        <---------ANAC46                                                                        <---------ANAC58                                                                        <---------ANAC58                                                                   <---------ANAC58                                                                   <---------ANAC55(2)                                   --------->ATHB12                <---------ANAC58                                  --------->MYB46(3)               --------->ANAC55(2)             --------->ATHB12     <---------ATHB12                <-------TEIL                      <          <----------DOF2 <---------ZAT18                     <---------------AtSPL3          <------   <------------CBF   --------->ALFIN1                        <---------------AtSPL8         --------  --------->ATHB12  <-----------RAV1(1)   <------------CBF   ---------->DOF2                 <------- -------TOE2(3)    <---------TOE2(3)<------------CBF ---------->DOF2 ----------->HVH21     --------->TOE2(3)   ttggttattgggctttgatttgatgttgggctctcaaccattgaaattgaatgaagaaagaaggaaagtacgtgacttgaatttcatttacttcattaaa  414800              <---------DEAR3(2)             <---------MYB46(3)             --------->MYB55(2)             <---------DEAR3(1)          --------->TCP20          <---------PCF2       --------->ALFIN1      --------->ALFIN1     <-------GAMYB    <---------ANAC46    <---------DEAR3(1)   <------NtERF2   --------->ATERF1(1)  <---------ATERF1(1)  <---------ORA47(2)  <---------ERF1  ------>NtERF2 --------->ALFIN1  <---------RAP2.3(1)  <---------DEAR4(2) <---------RAP2.3(3) <---------DEAR3(1)           <---------ATHB12 <---------RAP2.3(2)          ----------->HVH21 <---------RAP2.6(2)  --------->ALFIN1 ---------ABI4(1)  <---------AtMYB61                                                             ---- ---AHL20(2)<------NtERF2<---------PCF2<---------ANAC46                              >>>>>>>>>>>>>>>> ->AHL20(2) --------->ATERF1(1)--------->YAB1          --------->DAG2                <<<<<<<<<<<<<<<< --AHL20(2)------>NtERF2----------->TCP11(1)          ---------->DOF2          <---------ATHB12 <----   tgggcggcgttggggccggtggaggtgggccaatgacattgatgtgtaaacagaggtaaagccgaattttggctaaggcgaatcaatgcccattggctcc  414900                                                                                              <------                                                                                        <---------ALFIN1                                                                                        --------->AtMYB61                                                                                   <---------ATERF1(1)                                                                                  <---------TCP16(1)                                                                                  <---------TCP20                                                                                  --------->PCF2                                            <---------AHL20(2)                   --------->GLK1(1)                                           --------->AHL20(2)                   <---------ATERF1(1)  ------>ZmHOX2a(1)                 --------->TOE2(3)                         --------->LBD16 ------- -->ZmHOX2a(1)         --------->GLK1(1)   <---------AHL20(2)                <---------LBD16  ------- >LFY               <---------TOE1(3)  <---------AHL20(2)                   <---------LBD16   <------ <LFY--------->ANAC55(2)        <----------DOF2<-----------RAV1(1)    --------->YAB1   --------->MYB46(3) -----ALFIN1        <---------TOE2(3)  --------->AHL20(2)       --------------->AGL15<---------ALFIN1   tctccttacatatttgaagtttgaggtttccttccttttcttaaattaaatgttgctgtaacatttctactattgtaaaccggggctccaccaccatgtg  415000                           <-------MYC3                           ------->MYC3                     <---------ICU4                        <---------ALFIN1                    --------->YAB1                       --------->ZAT18                     --------->ICU4              --------->ANAC58                       <---------ZAT18                   <--------HAHB4                --------->ANAC58                     --------->PCF2          --------->YAB1<---------YAB1             ---------------                     <---------ZAT18        <---------AHL20(2)          <-----------HVH21 -MYC3          --------->At4g35610        --------->AHL20(2) <---------YAB1          <-------------- >MYC3          <---------YAB1 --------->WRKY18(1)      <---------YAB1 <---------bZIP60(1) >MYC2        --------->YAB1  <-----------HVH21   <----------DOF2<---------YAB1*TSS   <-------------- -MYC2<---------ALFIN1 --------->RAP2.3(3)----------->TBP--------->YAB1--------->bZIP60(1)------->TEIL   cttcttcaacactgtatcatcagagcccacatggtcatgcctctatataatactttgtattattattattcttatgtcacattataaacaagtacctcca  415100                                                                    <---------At4g35610                                                                    <---------GLK1(1)                                                                    --------->GLK1(1)                                                                <------NtERF2                                                               <---------LBD16                                                             ------>NtERF2                                                        --------->ATERF1(1)                                                        <------NtERF2                       <--------                                                       <-----------HVH21                    --------- <---------ZAT18                          ------->TEIL<---------ANAC46                     --------->ATERF1(1) --------->ZAT18                  --------->At4g35610 <---------ANAC58        --------->ALFIN1 >AtSPL8                    --------->ZAT14           <---------ANAC58     --------->ANAC55(2) -AtSPL8                    <---------ZAT18        <---------DEAR3(1)     <---------LBD16 <---------GLK1(1) -AtSPL3                    <---------ZAT14      <---------AtLEC2--------->LBD16--------->ALFIN1    <   aattgcacttccttcaaacttattcgacagtagactagctcaagtacctttggatggcgtcgaggcccggagctcttacggagtggccatggagtcccct  415200                                                                 --------->ALFIN1                                                               <---------MYB46(3)                                                              <---------DEAR3(1)                                                             --------->At4g35610                                                           <---------RAP2.3(2)                                                           <---------DEAR3(1)                                                           <---------RAP2.3(3)                                                           <---------RAP2.6(2)                              <------MYB46(1)              <---------ANAC46                              <---------MYB46(3)          --------->RAP2.6(3)                              <------MYB83               --------->MYB52(1)                             <---------MYB46(3)         ----------->TGA1                             <---------AtMYB61          ----------->HVH21                            <---------MYB52(1)        --------->ANAC55(2)                           =====================================MYC_MYB               <---------At4g35610                           <-------GAMYB              <---------TGA1a                 <---------ZAT2                         <------NtERF2                <---------ANAC55(2)             --------->At4g35610                       <---------PCF2 <---------ANAC58<---------ANAC58                --------->ZAT2                       --------->TCP16(1)             =================================bZIP_DOF                      <---------TCP16(2)             --------->SPL7                 <-----------RAV1(2)  <---------At4g35610 ----------->TCP11(1)           <---------TOE1(2)            --------->AtMYB61  --------->At4g35610 <------NtERF2   <---------ANAC46--------->TGA1a           --------->ARR11(3) -ZAT18               --------->ATERF1(1)   --------->ANAC58 <---------At4g35610<---------ARR11(3) >ZAT18              <---------ATERF1(1)    --------->ANAC58------>NtERF2   ---------->DOF2     ----- --------P ------->TEIL--------->PCF5 <---------ANAC58<---------ANAC58   <------ZmHOX2a(1)     <-----   tggtagcttcaagtacctcttggtggccccgttggtgatggcgagcatgcactcgtacgtgacggctgtggatgaggagaaagacctcagcagacttatg  415300                                                                     --------->MYB52(1)                                                                <---------DEAR3(1)                                               <---------ANAC58 <---------RAP2.6(2)   ------>ZmHOX2a(2)                                     --------->CCA1(2)        ==============================HOX2a_HOX2a                                    <---------ARR11(3)        ===============================HOX2a_HOX2a                                    --------->ARR11(3)        <------ZmHOX2a(1)      <------ZmHOX2a(2)                                    --------->ARR14(2)     <---------At4g35610      <---------ARR11(3)                                    <---------ARR14(2)     --------->At4g35610      --------->ARR11(3)                                    --------->ARR11(1)   <-----------RAV1(2)        <---------ARR14(2)                          --------->ZAT14      <---------ANAC58--------->RAP2.6(3)  --------->ARR14(2)  <---------ANAC58        --------->ZAT18  ==========================HOX2a_HOX2a    --------->ARR14(3)  <---------ANAC58        <---------ZAT14  <------ZmHOX2a(2) ----------->HVH21      <---------ARR14(3) ---->YAB1     --------->ALFIN1 ----------------->AGL3--------->ANAC58      --------->MYB46(3)------- ----YAB1    <---------ANAC46   <-----------------AGL2--------->ANAC58      <---------MYB52(2)-------   atagtcgtgttgatgctgtggagaatagttcacagccagatatggatcagcgtgtctcgccagaggacggctaagggaacgaacaagatcgtggacaagc  415400                                                                                                  ---                                                                                                <----                                                                                                -----                              <---------TGA1a                                                   -----                           <---------ZAT18                                                      -----                           <---------ZAT14                                                      -----                           --------->ZAT18                                                     <-----                           --------->ZAT14                                                     <-----                         <---------ZAT18                                                       ------                         --------->At4g35610                                                  -------                         --------->ZAT18   --------->ANAC58                    --------->YAB1--------                         <---------At4g35610    --------->At4g35610      --------->ANAC58   <--------                --------->WRKY38(1)        --------->bZIP60(2)       ------->TEIL    <---------At4g35610                --------->ZAT18            --------->ANAC46         <---------CCA1(2)--------->ZAT2 < -->ANAC58      --------->WRKY12           --------->ANAC58    ------>ZmHOX2a(1)  ---------->DOF2---- -->ANAC58     --------->ALFIN1     --------->SPL7     <---------ALFIN1  --------->ANAC58 <----------   ccattgagtttgagcaagtggaccgagagcgcacttgggacgaccaagtcatcttcaacactctcctcatgtatctcgcaaacatcaagctcccaggcgc  415500      ------>MYB46(1)      ------>MYB83    --------->AtMYB61   --------->ZAT2 <---------ALFIN1 --->NtERF2 --NtERF2 ---->RAP2.3(1) ---->ATERF1(1) ---->DEAR4(2) ---->ORA47(2) ----ATERF1(1) ----RAP2.3(1) >NtERF2                                                                                            - -->RAP2.6(2)                                                                                       < ->RAP2.3(1)                        <---------ICU4          <---------ANAC46                       -- -ATERF1(1)                        ------>ZmHOX2a(1)     --------->PCF5                          <--- ---------MYB55(2)           --------->ATERF1(1)        <-----------HVH21                        ---- ----->DEAR3(1)             ------>NtERF2          --------->ANAC46                        <---------ZAT18 -RAV1(2)                  <---------PCF5     --------->ANAC46                             --------->ZAT14   ctcccaccttcccccatggaggctagacggggccatcctcatggctctacttcacgctggtcccgtcgagtttctctactactggtttcacagagctctc  415600  Previous    Next  AGI:  At1g02180.1    Description:  ferredoxin-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO70470.1); contains InterPro domain SCP-like extracellular (InterPro:IPR014044) Range:  from: 413522    to: 414645    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g02190.1    Description:  CER1 protein, putative. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G37700.2); similar to catalytic [Arabidopsis thaliana] (TAIR:AT2G37700.1); similar to CER1 (ECERIFERUM 1) [Arabidopsis thaliana] (TAIR:AT1G02205.2); similar to Sterol desaturase [Medicago truncatula] (GB:ABN07985.1); similar to Sterol desaturase [Medicago truncatula] (GB:ABD28316.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17291.1); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) Range:  from: 415079    to: 418010    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version