Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            ------>ZmHOX2a(1)                                                                                        ------>ZmHOX2a(2)                                                                                       <------ZmHOX2a(2)                                                                                      --------->ARR14(3)                                                                                      <---------ARR14(3)                                                                                      --------->AGP1                                                                                      <---------GLK1(2)                                                                    <---------MYB52(1)--------->ARR11(3)                                                                   <-------GAMYB      <---------ARR14(2)                                                                  <---------MYB46(3)  --------->ARR14(2)         --------->TOE2(2)                                    --------->ANAC58        <---------ARR11(3)    <----------DOF2                               --------->ANAC58--------->MYB55(2) <---------GLK1(1)    <---------DAG2                                --------->ANAC58--------->MYB52(2) <---------At4g35610 --------At4g35610                    <---------ZAT2          --------->ANAC58      ----------->ARR10 ------DOF2                           --------->At4g35610--------->ANAC46  <---------ANAC46   ttgctgctttacctatgtgttattttgtttctcagagggaagctcgactggaacgcaataagacacggtcgttgttctcgtgaatgcagatcctcgaata  411400                                    <-----------RAV1(1)                                <---------ARR14(2)                                --------->ARR14(2)                                --------->ARR11(3)                       <---------STY1(2)  <---------ICU4       --------->STY1(2)  --------->YAB1      ------>MYB83  ------>ZmHOX2a(1)                  ------>ZmHOX2a(2) <---------ATHB12     ------>MYB46(1)                                <---------ARR11(3) --------->ICU4   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->ARR11(3)            <-   ccaatgatgtctcagaacatcacctagctagtagtatcctgttgtttcatttgcaatggctgtgtttgtatgatctatctaagtaaacaagtggaaagtg  411500                    <<<<<<<<<<<<<<<<<LFY                    >>>>>>>>>>>>>>>>>LFY               <-----------GT1           <---------DAG2                                                     <---------AHL20(2)           <----------DOF2                                                <---------AHL20(2)        <-----------GT1                                                   --------->AHL20(2)    <---------TOE1(3)            <---------ICU4                    ----------->GT1    <---------TOE2(3)            --------->YAB1                    <---------MYB46(3)  <---------ZAT6 --------MYB46(3)  --------->ANAC46   <---------ANAC46<----------DOF2    <---------AHL20(2)   tttgttaatgttactttttactccccattggtgaatcatggtgtatacctgttaaactttgagagcaagtggttatttatttagttagagagttagagct  411600                          <----------DOF2                            <---------LBD16                         ------>ZmHOX2a(2)                         --------->CCA1(2)                       --------->ARR11(3)                          <------ZmHOX2a(2)                       <---------ARR14(2)                         --------->AGP1  ----------->GT1                       <---------ARR11(3)                         --------->ARR11(3)                       --------->ARR14(2)               --------->At4g35610   --------->HSFB2a(2)                       <---------ARR14(3)             <---------ANAC58    --------->GLK1(1)     ----------->RAV1(1)<------ZmHOX2a(2)             <---------ANAC58--------->LBD16    --------->AtMYB61  --------->ARR14(3)    --------->ZAT14      --------->ARR14(2)    <---------ALFIN1   <---------AGP1       <---------DAG2----------->HVH21   <---------HSFB2a(2)   --------->MYB46(3)  <-----------ARR10    <----------DOF2       <---------ARR14(2) --------->ANAC46    ----------->ARR10   <-----------GT1<------NtERF2--------->TOE1(2)             -- <---------ALFIN1--------->YAB1       <----------DOF2 <---------ANAC46<---------LBD16  <------------CBF   tctccaccaccatattgaataagaagatctttctctcattcttttactttactctggcgtctgaaacagatccagggattccagtagtgaattgggctta  411700                                        >>>>>>>>>AtERF-3                                      <---------ZAT2                                      <---------At4g35610                                         ---                                      --------->ZAT2                                          -------                                      --------->At4g35610                                     -------                                 <------MYB83                                                 -------                                 <---------ANAC46                                            --------                                 <------MYB46(1)                                          --------->ANAC55(2)                                --------->MYB52(2)                                        <---------ANAC55(2)                                --------->MYB46(2)                                        <---------ANAC58                                <---------DEAR3(1)                                        <---------ANAC58                                <---------MYB46(3)                                        <---------ANAC55(1)                            <---------HSFB2a(1)  ---------->DOF2                          <---------ANAC46                           --------->DAG2------>NtERF2  --------->At4g35610           <----------DOF2              <----------DOF2  <-------TEIL ---------->DOF2   <----------DOF2     <---------GLK1(2) -  ----------->GT1  ---------->DOF2<-----------HVH21 <-----------HVH21     ----------->HVH21  -------- ---------->MYB.PH3(1)   ---------->DOF2>>>>>>>>>AtERF-4<---------At4g35610    *TSS--------->GLK1(2)-   aaaactgttatatgggctttcgaaagtaaaaggttcggtgagctgccaaagaaaagtcagatgcctttaatcgcatttgacgacgattctttacgtgcgc  411800                                                                                              ------>MYB46(1)                                                                                              ------>MYB83                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                           <---------ZAT2                                                                                           --------->ZAT2                                                                                          <---------ATERF1(1)                                                                                       <-----------HVH21                                                                                       --------->LBD16                                                                                       <---------ATERF1(1)                                                                                       ------>NtERF2                                                                                      --------->ANAC58                                                                                      --------->ANAC58                                                                                     --------->MYB46(3)                               <------MYB83                                        ------->TEIL                               <------MYB46(1)                                    <-----------GT1   - <---------WRKY18(1)   --------->ANAC55(2)                                     <---------------AtSPL8 ------------------>WRI1      --------->MYB59                                  --------------->AtSPL8 -->ANAC58             --------->ANAC46            ----------->RAV1(2)        <---------ICU4--------- -->ANAC58             <-----------------AG        <---------At4g35610       --------->ICU4--------->bZIP60(2) -->ANAC46             <---------ANAC55(2)<-------TEIL                     --------->YAB1 ------>NtERF2 ->SPL7                <-----------------AGL1      --------->At4g35610  --------->YAB1--------->ANAC46 -------->WRKY38(1)    --------->ANAC58 <---------ARR14(2)           --------->HSFB2a(2) <---------ALFIN1 ->ZAT18               --------->ANAC58 --------->ARR14(2)           <---------HSFB2a(2) --------->DEAR3(1) -------->WRKY12    ------>ZmHOX2a(1)   <---------GLK1(2)            --------->LBD16 <---------LBD16-   cattgactgcatcgtcgtcttcctcacgcgatttggtaatccgattcgtcttcatctgattccctcccttccgagaataataatgtacccgccacctccc  411900                                                                          --------->AGP1                                                                          <---------ARR14(2)                                                                          --------->ARR14(2)                                                                     <---------ATERF1(1)                                                                     ------>NtERF2                                               ------>NtERF2         <---------SPL7                                              --------->ANAC58      --------->DEAR3(1)                                              --------->ANAC58     --------->ATERF1(1)                                             --------->SPL7        --------->RAP2.3(1)                                            <---------ATERF1(1)    --------->ORA47(2)                                           <---------SPL7         <---------ATERF1(1)                                           --------->LBD16        <---------RAP2.3(1)                                           ----------->HVH21      --------->LBD16               <----   <-----------ARR10                     <---------LBD16         --------->ANAC46      <---------ZAT18 >AtMYB61                                --------------->AtSPL3 --------->SPL7       ------>NtERF2 -MYB111(2)                          <---------MYB52(1)         <---------LBD16      --------->ZAT14 -ALFIN1--------->ANAC46             <-------GAMYB      <---------At4g35610       --------->At4g35610 -------->ANAC58                    --------->LBD16     --------->At4g35610<------ZmHOX2a(2)  ------>NtERF2 >DEAR3(1)    ------>ZmHOX2a(1)   <---------LBD16       --------->ZAT2<------NtERF2  <---------ZAT18 -------->ANAC58       ----------->GT1<--------P        <---------ZAT2--------->ATERF1(1)     XXXXXXX   tcaagcatctacgctcctccgatgctggtgaattgctccggttgccggacgcctctccagctcccatccggcgcccgatctattcgctgcgctctctgcc  412000                                                                                          <----------                                                                                         --------->LBD16                                                                                        --------->LBD16                                                                                   --------->ATERF1(1)                                            <---------HSFC1(2)                     <------NtERF2                               <---------ATERF1(1)                                ------>NtERF2                             ------>NtERF2  --------->HSFB2a(1)                  --------->ANAC46                             --------->ABI4(1)                                   --------->ANAC58                            <---------ALFIN1--------->HSFC1(2)                  <-------MYC3  -------                            --------->DREB2C(2)                                 <-------MYC2  -------                            --------->DEAR3(1)                                  <-------PIF5  <------                           --------->DEAR3(2)                                   ------->MYC2  <------                           --------->DEAR4(2)                                   ------->MYC3  -------                           --------->ATERF1(1)      <---------ALFIN1      <---------ARR14(2) --------                  <---------ARR14(2)    --------->LBD16                   <-----------ARR10 <--------                  --------->ARR14(2)   --------->ANAC46           --------->DEAR3(1)<---------ALFIN1                 ------>NtERF2 <---------ALFIN1     --------->ANAC46      --------->ARR14(2)<--------                <---------ETT(1)      <---------LBD16------>NtERF2<---------ALFIN1<---------ATERF1(1)                --------->DEAR4(1)   ------>ZmHOX2a(1)           --------->ATERF1(1)--------->DEAR3(1)          <---------CCA1(2)--------->ORA47(2)  ------>MYB46(1)  ------>NtERF2  --------->ANAC58        --------->YAB1     --------->MYB46(3)  ------>MYB83     <---------ATERF1(1)--------->DEAR4(2)   <---------MYB52(1)    <---------ALFIN1   <---------HSFB2a(1)--------->DEAR3(1)--------->ANAC58  <-------GAMYB --------->DEAR3(1)  <---------ALFIN1--------->DEAR3(1)--------->LBD16------>NtERF2 <---------MYB46(3)    --------->ANAC58--------->ANAC58        --------->ANAC46--------->ANAC46 -------RAV1(2) ----------->HVH21<---------ALFIN1 ------>ZmHOX2a(1)------>NtERF2------->PIF5<-------- XXXXXXXXXXXXX>MIR779.1--------->ANAC58--------->ANAC58       <---------LBD16  --------->ANAC58  ----   aggctgttactcatatcgccgaccctcgcaccgcccctcctccgcaaccttcctccgccccttctccgcctccccaaatccacgcgcctcccggtcagct  412100 <---------ALFIN1                                                                                 <-- -HVH21<---------ALFIN1        <-----------RAV1(1)                                               ---- -->ZAT2                      ------>ZmHOX2a(2)                                              <------- -->At4g35610               <---------ARR11(3)                                       ------>NtERF2<-- ---At4g35610             ----------->HVH21                        ---------->DOF2  --------->ANAC58 ---ZAT2                  <---------MYB52(1)           --------->ANAC58             --------->ANAC58 ---->RAV1(2)           <---------ANAC58               --------->ANAC58             --------->ANAC46 ->MYB52(2)             <---------ANAC58   <---------CCA1(2)   --------->At4g35610------->GAMYB  <--- -WRKY12                <---------ANAC46 <---------ANAC55(2) <-------PIF5        --------->ANAC46<--- -WRKY38(1)            <---------DEAR3(1)--------->ANAC55(2) ------->PIF5        --------->MYB46(3) < ---RAV1(2)    <------ZmHOX2a(1)         --------->TOE1(1) ------>NtERF2   --------->REM1(1) <------- -->NtERF2     ======================HOX2a_HOX2a       --------->ANAC46   <------NtERF2     <-------TEIL   gcctcacccccatggcaggaagagggccgtgatctgtggcatctcgtatcgtttctctcgccacgagctcaaaggctgcatcaacgacgccaagtgcatg  412200   <---------DAG2                                        --------->ZAT14 ---------TGA1                                     --------->MYB52(1) ----->ANAC46                                      -------->P --ANAC58                                       <---------ANAC58 ---------HVH21                     <-------TEIL<---------ANAC58 ------ANAC58                     --------->ARR14(2)     <-------TEIL ------ANAC58                     <---------ARR14(2)     <---------ZAT14                          --- ---------ALFIN1              --------->LBD16  <---------ICU4            <----------DOF2          <-- --ANAC58              <---------GLK1(2)      <---------YAB1         <---------CCA1(2) <---------YAB1   cgtcaccttctcatcaacaaattcaaattctccccagattcaattctcatgcttaccggtacagagtatttctatcttttcaaatgcctatgtttgctac  412300  Previous    Next  AGI:  At1g02160.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO70493.1); contains InterPro domain CHCH (InterPro:IPR010625) Range:  from: 410748    to: 411597    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g02170.1    Description:  LOL3 (LSD ONE LIKE 3); caspase/ cysteine-type endopeptidase. similar to ATMC2 (METACASPASE 2), caspase [Arabidopsis thaliana] (TAIR:AT4G25110.1); similar to unknown [Populus trichocarpa] (GB:ABK95057.1); contains InterPro domain Peptidase C14, caspase catalytic; (InterPro:IPR011600); contains InterPro domain Zinc finger, LSD1-type (InterPro:IPR005735) Range:  from: 411779    to: 413554    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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