Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->RAP2.3(3)              <---------ATHB12                 --------->ANAC46           ==============================HOX2a_HOX2a           ------>ZmHOX2a(1)                ----------->HVH21      <---------At4g35610                 <---------ANAC58                                   --------    <---------CCA1(2)                     <---------ANAC58                                --------->ANAC58   <---------MYB52(1)                ------>ZmHOX2a(1)                                    --------->ANAC46   --------->LBD16                  <---------LBD16                                       --------->ANAC58  --------->ANAC46                 ----------->RAV1(2)                                  <---------ANAC58 <---------LBD16                  <------ZmHOX2a(2)        --------->ARR11(3)           <---------ANAC58 --------->HSFB2a(2)             <---------ARR14(2)        <---------ARR11(3)   --------->ANAC58    < <---------HSFB2a(2)             --------->ARR14(2)------>NtERF2                --------->ANAC58    <   gttcccgtagctcctaatcaagctgttgaagtagcgatcctggagcttgacgcagccattagaccttctctcgatggagaacaagaaattgcgagccaca  362700                                                                                         <---------LBD16             <---------WRKY18(1)                                                        --------->MYB52(1)         <---------ZAT2                                                                --------->ARR14(2)         --------->ZAT2                                                                <---------ARR14(2)       <---------ZAT18                                                             ---------->DOF2      <---------ANAC58             <------ZmHOX2a(1)                              <---------WRKY38(1)      <---------ANAC58 --------->ZAT6                                             <---------WRKY12 -- --->RAV1(1)--------->ETT(2) --------->YAB1       <----------DOF2               <-----------HVH21  -- ---------YAB1        --------->GLK1(1)         <----------DOF2           --------->GLK1(1)      ---- ---------TOE2(3)   <------ZmHOX2a(1)         <---------ZAT14             <---------GLK1(1)--------->LBD16   ttgagattgcgagctcgaccgaggaactctaacatgaggaagaaagactgctctttgtgagaaaaccccttgttggaaacccagtcaaagaaccggagac  362800                                              --------->LBD16                                             <---------HSFB2a(2)                                             --------->HSFB2a(2)                                          <---------ARR14(2)                                          --------->ARR14(2)  --------->LBD16                       --------->MYB55(2)                                          - --------->ANAC46                       --------->ABI4(2)                                        ---- ---->MYB46(1)                    --------->MYB52(1)                            --------->ZAT14  <--- ---->MYB83         --------->ANAC58    <---------MYB46(3)               <---------YAB1         ----- ----->AtMYB61      --------->ANAC58   --------->ALFIN1                --------->CCA1(2)      <------   catccgcagggaccttgatgagacgcagggtttggagaacggtggttctggagatggtttgggacggatgaagagatgatagtgaagactcgagttcgtc  362900                                                                                  --------->ZAT2                                                                                  --------->ATERF1(1)                                                                                  <------NtERF2                                                                                  <---------ZAT2                                                                                 <<<<<<<<<AtERF-5                                                                                 <<<<<<<<<AtERF-1                                                                                 <---------RRTF1(1)                                                                                 <---------MYB46(3)                                                                                 <---------ATERF1(1)                                                                                 ------>NtERF2                                                                                 <---------ERF1                                                                                 <---------RAP2.3(1)                                                                                 <<<<<<<<<AtERF-2                                                                                 <<<<<<<<<AtERF-3                                                                                 <<<<<<<<<AtERF-4                       ------->PIF5                                              <---------DEAR3(2)                       <-------PIF5                                             <---------RRTF1(2)                      --------->ATERF1(1)                                       <---------RAP2.6(2)                      --------->ANAC58             <------MYB83                 --------->ATERF1(2)                      --------->ANAC58             <---------ANAC46             <---------DEAR3(1)                 --------->ANAC46                  <------MYB46(1)              <---------RRTF1(3)                <---------LBD16                   --------->MYB111(1)           <---------ATERF1(2)       <--------P--------->ANAC55(1)  <---------ANAC46                          <---------RAP2.3(2)  <---------LBD16--------->ANAC58     <---------ANAC58                          <---------RAP2.3(3) <---------ALFIN1--------->ANAC58     <---------ANAC58                         --------->RAP2.6(3) -------->MYB46(3) <---------SPL7<---------bZIP60(2)                           <---------LBD16  <---- ------->HVH21<---------ZAT14    ----------->RAV1(2)    ------->TEIL --------->YAB1<---------ANAC46 ------ETT(1) --------->ZAT14  <------ZmHOX2a(1)  <---------AtMYB61  ----------->GT1      <---------ARR14(2) ---->SPL7    --------->ZAT18--------->ANAC58 --------->ATHB12   --------->ATHB12<<<<<<<<<AtERF-7 ---SPL7   <---------ZAT6    --------->ANAC58<---------YAB1<----------DOF2 <----------DOF2--------->ARR14(2)   cgaccacgggttagagttcacggcacgggccaaggacctggcgagttttgatttggtggacctttcttcattggtaactttggcggctcggagaactggt  363000                                                                                           <---------ALFIN1                                                                                         <---------ATERF1(1)                                                                                         --------->DEAR3(1)                                                                                        --------->RAP2.3(1)                                                                                       <---------At4g35610                                                                                       <------NtERF2                                                                                       <---------ATERF1(1)                                                                                       ------>NtERF2                                                                                      --------->ANAC46                                                                                     --------->SPL7                                                                                   <-----------HVH21                                                                                  <---------TGA1a                                                                                  --------->ANAC58                                                                                  --------->ANAC46                                                                              <---------ALFIN1                                                                             --------->ATERF1(1)                                                                             <---------At4g35610                                                                            <<<<<<<<<AtERF-3                                                                            <<<<<<<<<AtERF-4                                                                            ------>NtERF2<---------ALFIN1                                                                            <---------ORA47(2)                                                                            <---------RAP2.3(1)                                                                            <---------ERF1<---------At4g35610                                                                           <---------ATERF1(2)                                                                           --------->ATERF1(2)                                                                           <---------RRTF1(3)                                                                           <---------RAP2.3(2)                                                                           <---------DEAR3(1)                                                                           <---------RAP2.3(3)                                                                           <---------RAP2.6(2)                                                                           --------->bZIP60(1)                                           <---------YAB1        --------->ANAC58 --------->ANAC58                                        --------->ARR14(2)       --------->ANAC58 --------->O2                                        <---------ARR11(3)      ------>NtERF2--------->At4g35610                                        --------->ARR11(3)      --------->LBD16   <---------O2 ------                             <---------------AtSPL8            <---------ANAC46   --------->TGA1a----                             <---------TOE2(3)                <---------LBD16<------NtERF2------>NtERF2                             --------->MYB59           =====================================bZIP_DOF<               ---------->DOF2   <-------TEIL          ---------->DOF2    --------->RAP2.6(3) *TSS -- ----P <----------ID1   <---------ANAC46<---------ARR14(2)   <---------At5g28300<---------ALFIN1 <---   tgagacttggagacaaacaaagcatggagtttaggtacagaagataccattgcagaagaaagttgccgcgaaatatggcggcacacgtccgccgctcctc  363100           ------>NtERF2           <------NtERF2          <---------SPL7       --------->LBD16       ------>NtERF2     --------->SPL7     <---------LBD16                                                                  <---------HSFB2a(2) >ZmHOX2a(1)                                                                          >>>>>>>ZML2 ----->AtMYB61                                                  --------->TOE2(3)     --------->HSFC1(1) ---------ALFIN1             <----------DOF2                    --------->YAB1        --------->HSFB2a(2) ------->ANAC46       --------->MYB46(3)                        >>>>>>>>>RAP2.2<----------DOF2     <- ------ALFIN1      <----------ID1 <<<<<<<<<TBF1            ------------>CBF  ------>ZmHOX2a(1)<------   caccccttccggcggaccaagagaacaaaccctttcttcttcattctataactctctaaggcccaatctaaatgggctcctctttgttctagataacttt  363200                                  <---------ARR11(3)                         --------->ANAC58                         ----------->HVH21                         <---------ETT(1)                         --------->ANAC58                         --------->ANAC46                        <------NtERF2                      --------->TCP16(1)                      <---------PCF2                      --------->PCF5                     ----------->TCP11(1)                     <---------TCP16(2)                     --------->ATERF1(1)                     <------NtERF2<---------AHL20(1)                                  --------->AHL20(2)                    <---------ATERF1(1)                                               <---------YAB1           --------->YAB1--------->bZIP60(2)                                 --------->MYB52(1)           --------->AHL20(2)     --------->ARR11(3)                         ----------->RAV1(1)          <---------ATHB12------>NtERF2                         --------->DAG2        <---------AHL20(2)       ------------>ATHB5--------->DEAR3(1)                    ---------->DOF2  ------->GAMYB      ----------------->AGL3      --------->AHL20(1) --------->TOE1(3)    --------->ANAC58 ---------DOF2     --------->ALFIN1                  <----------DOF2      --------->ANAC58         -- ----DOF2 <---------ATHB51----------->RAV1(1)        --------->TOE2(3)    --------->ANAC46       ----   actttaggcccaattatagaggtggccccgacacaatattttgttttgttttaaactttaaaaaaaaaaggagaagaagcaacagcatataattaagtcc  363300          <---------YAB1        <---------ICU4                                                       --------->TOE2(3)        --------->YAB1                                                      ----------->GT1       <---------ATHB12                                                --------->YAB1     --------->YAB1                                             <---------GLK1(2)     --------->WOX13(1)                               <---------WOX13(1)   <---------TOE2(3) ------->STY1(2)                                    --------->ATHB12 --------->AHL20(2) -->ZmHOX2a(1)        <---------GLK1(1)      <---------GLK1(2)  <---------ARR11(3)                  <   tagctattaatcatcatccatagcatatcagtaagtttttgaagatagattgtttgattgcatacagattttaaaataatgttaaaccctgaagtaaact  363400                  --------->O2                  <---------O2                  ===============================================bZIP_DOF                  <---------bZIP60(2)                  <---------ANAC46                  <---------ANAC58                  <---------ANAC58          ------>MYB83          ------>MYB46(1)                                                       ----------->GT1         ----------->RAV1(1)                                                ------>NtERF2        --------->AtMYB61          ------>ZmHOX2a(2)                       --------->LBD16    <---------ZAT18              --------->ARR11(3)      --------->ATHB12  --------->ZAT18    --------->ZAT14    <---------ANAC46         <---------MYB52(1)         <---------ZAT18        <--    --------->ZAT18  <---------ANAC46         <---------ANAC58            <---------ANAC58        <--    <---------ZAT14 --------->ALFIN1          <---------ANAC58            <---------ANAC58        --- -----------GT1   <---------TGA1a<---------ARR11(3)   <----------DOF2    <---------LBD16          ---   tgtaactgcaccaacacaagacgtggtgtatggatgatctactacattccgtttccctttcattgggaatcaatttgcggactagtttaaaacaatcgca  363500                    --------->ICU4                 --------->ICU4                --------->At5g28300        <---------ANAC58                       --------->ATHB12         <---------ARR14(2)        <---------ANAC58                      <---------YAB1           <---------GLK1(1)       <---------ICU4                  <------NtERF2                   <---------CCA1(2) --------->YAB1----------->GT1         <---------ANAC46    <---------ZAT18 -----MYC3   --------->LBD16         --------->ALFIN1      --------->ZAT18 -----MYC2   <---------ZAT18       --------->ZAT2      --------->DAG2<------MYB46(1)         <------- ---->MYC3   --------->ZAT18      --------->ALFIN1    ---------->DOF2<------MYB83            -------- ---->MYC2  <---------ANAC46 ---------->DOF2  --------->ICU4   --------->ICU4             <----------   tatgcataatacttgcgcagtaattagggaagaaaggaggtgggggtaatgagtgagaaagtgcaataagtgggtatctctcaaattaagagagagatgt  363600  Previous    Next  AGI:  At1g02060.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G37230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45290.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73209.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 360918    to: 363094    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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