Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <------MYB46(1)                                                          <------MYB83                                                          <---------MYB46(3)                                                      <-----------RAV1(1)                                                      <---------MYB46(3)                     --------->RAP2.6(2)             <---------WOX13(1)         <-----------RAV1(2)                     ------->GAMYB                 --------->ATHB12          --------->At4g35610                     --------->DEAR3(1)          <----------DOF2          <---------MYB52(1)                    --------->MYB46(3)           <---------WOX13(1)     <---------MYB46(3)                  <---------ALFIN1              <---------ANAC58      <-------GAMYB                 --------->MYB46(3)             <---------AtLEC2     =======================RAV  <--- --------ANAC58--------->HSFB2a(2)              <---------ANAC58     <-----------RAV1(1)        <---- --------ANAC58--------->ANAC46             <----------DOF2    ------->TEIL  <---------At4g35610<----   ggcttccaatgccatttccacaaccgcctcgtttgcaatttcaagtctttgcttgattgttggtgaaccctctgttgttagctcagggtatttagccagt  360100          <---------REM1(2)          ---------->ID1              --------->TOE2(3)      <-----------HVH21            <---------MYB46(3)   --------->At4g35610 ------ARR11(3)                  <-------GAMYB         ------->GAMYB -----CCA1(2)               <---------REM1(2)       --------->MYB52(1)---------->DOF2               < -----GLK1(2)          <---------ANAC46             ----------->RAV1(1)    <----------DOF2          -   atctctcgcgtcaacacagtgtatcgcgtcttcacggttgtcgttttgcctaaacaacagcacaaaacattagaaagctttcagcatttcacaagagagc  360200                                                                               <---------ANAC58                                                                               <------MYB83 <--------                  ---------->DOF2                         --------->YAB1       <------MYB46(1)             --------->AHL20(2)                        <----------DOF2         <---------ANAC58  ----           --------->AHL20(2)                     <----------DOF2  <-----------HVH21        --------- ---------At4g35610            <---------ANAC58   <---------DAG2   <-----------TGA1   <---------ANAC46 -------->At4g35610            <---------ANAC58  <---------GLK1(2)--------->ANAC46  <---------ANAC46-   atagctgtctgaaaaaaatataaagagactgaggcttacacaagtgttccagcttttctttgataaacgcgtcatcacatttggtgtctcgtagaaatcc  360300                                                                      <---------MYB52(1)                                                                     ------>NtERF2                                                                     --------->LBD16                                                                    --------->ANAC46                                                                   --------->RAP2.6(3)                                                                   <---------LBD16                                                                 --------->ARR14(2)                                                                 <---------ARR14(2)                                                                <----------DOF2             ------>ZmHOX2a(1)                                 <----------DOF2      <---------ARR14(2)                                       <---------DAG2     --------->ANAC46      --------->ARR14(2)                                      <---------ANAC58    --------->ANAC58      <---------GLK1(2)                                       <---------ANAC58    --------->ANAC58    ----------->ARR10       <---------ANAC58             <---------ZAT6         <---------ALFIN1 -GLK1(1)  ----------->RAV1(2)                           --------->ALFIN1    --------->ANAC46      <- -->ZmHOX2a(1)              <---------ANAC46        --------->ANAC58<---------LBD16         <-------- >GLK1(1)  <---------LBD16  <---------ANAC58        --------->ANAC58<---------RAP2.6(2)     --------- -------->ZAT6   <------ZmHOX2a(1)     <----------DOF2   <-----------RAV1(1) <---------ETT(1)<-------   ttccactagattctcctgaggaacgacttggcttgggaaggctttgccaagagcaagcagtgttgcctttccggcatttgcgacacgccttgtggatttg  360400     <---------GLK1(2)   <---------HSFB2a(2)   ----------->ARR10     ------>ZmHOX2a(1) --------At4g35610       --------->HSFB2a(2)                                             --------->ALFIN1 -ARR14(2)          --------->YAB1                      ----------->GT1             ---------->DOF2 >ARR14(2)         <---------ATHB12               --------->ZAT18        --------->ARR11(3) --GLK1(1)   --------->ANAC46            <----------DOF2<----------ID1   <---------ARR11(3)  <-------   ctgcttagcttctcaacaccattcatcctagaattcgacatttcttttcaagcgcagaaggaaaaaactcaattagatattgggaagaaagatggtggat  360500                                                              <------MYB83                                                              <------MYB46(1)                                                              <---------ANAC58                                                              <---------ANAC58                                                             <---------MYB46(3)                                                             --------->MYB59                                                             --------->MYB111(1)               ------                                                             <---------AtMYB61     <---------ANAC55(2)                             <---------TOE2(3)     <---------LBD16             <---------ARR11(3)   <                           ---------->DOF2      <---------ANAC58 <---------At4g35610           ------                     <------ZmHOX2a(1)          <---------ANAC58 --------->At4g35610  ---------->DOF2 <---------GLK1(2)*TSS    <---------YAB1<---------ANAC46     --------->MYB46(2)--------->ARR11(3)  -- --MYB46(3)      ---------->DOF2     --------->ALFIN1        --------->MYB111(2)<------ZmHOX2a(2) ---   gcagaatatcagcaaatggcaaaggattataaaggaagggttgagggttttcttggggagagtttggtgctgaagagtgaagatcatgtaaagagagaaa  360600                 ----------->GT1                 <------MYB46(1)                 <------MYB83                <---------MYB46(3)        ----------->ARR10           <---------TOE2(3)           <-------GAMYB                               --------->ANAC55(2)           <---------TOE1(3)          <------MYB83                                 <---------ANAC55(2)     --------->AHL20(2)               <------MYB46(1)                              --------->ANAC58     <---------AHL20(1)               --------->MYB55(2)                           --------->ANAC58     --------->AHL20(1)               <---------MYB46(3)                           ----------->GT1     <---------AHL20(2)              <---------AtMYB61                       --------->LBD16 --->MYB52(1)   --------->MYB46(2)<-----------RAV1(1)                       --------->LBD16 ---------MYB52(1)            <---------ANAC46                              <---------LBD16 ------>MYB.PH3(1)            <---------ANAC58 ----------->GT1              --------->ANAC46 ------->At5g28300            <---------ANAC58 --------->AtLEC2            <---------LBD16 -------->GT1   <---------AtMYB61 --------->ALFIN1                        <---------LBD16   cggttattttattagggtttggtgattctttggcctgtgttggttagaaatgcaaaaaacaccatgaaacctattttcccgggataagtaatataagcct  360700             --------->MYB59                                                                        <             <---------------AtSPL8  <------ZmHOX2a(1)                   ------->GAMYB          <----        <------ZmHOX2a(1)          --------->MYB59                      --------->MYB46(3)     <-----      <---------TOE2(3)      ---------->DOF2            <-------TEIL ----------->HVH21         <-----   aatctacttaggaaataggtaccatgaaggtgaaagttaggaacagagagttgcaacgtccatagagacctgtaacagacacgatgaatacaaacttgct  360800                                                                                         --------->ANAC46                                                                                        <---------HSFB2a(2)                                                                                        --------->HSFB2a(2)                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                             <---------ARR14(3)                                                                             --------->ARR14(2)                                                                             <---------ARR11(3)                                 ----------->GT1                           ----------->ARR10        <----------ID1          <---------ATHB12                  ---------->DOF2------>ZmHOX2a(1) ---------WOX13(1)         <<<<<<<<<<<<<<<<<LFY             --------->ANAC58 <---------ARR14(2) ------DOF2                >>>>>>>>>>>>>>>>>LFY             --------->ANAC46 --------->ARR11(3) ----ANAC58           <---------YAB1                        --------->ANAC58 --------->ARR14(3)     < ----ANAC58         <-----------GT1                       --------->MYB52(1)<------ZmHOX2a(1)    ----   taattgctgagggccaaaaattttacaattgccaatggataattttagacacagaattgaaaacggaacaaagagagaggatcctgtttaccagaaacca  360900                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                               ------                                                                                              -------                                                                                              <------                                                                                          ===========                                        <---------GLK1(2)                                 <----------DOF2             ------>ZmHOX2a(1)      --------->At4g35610                         --------->ARR11(3)   --------->ANAC58                 <---------At4g35610                         <-----------ARR10   --------->ANAC58                 ----------->RAV1(2)                         <---------ARR11(3)  ------->TEIL                   <---------ATHB12                ----------->HVH21     <---------ALFIN1 -------TEIL--------->TOE2(3)  --------->WOX13(1)              <----------DOF2  --------->ARR14(2) ----->At4g35610    <---------YAB1--------->YAB1             ------>ZmHOX2a(1)  <---------ARR14(2)   gatgcacggtctatccttcattctaatacagagcaatcatctgattctctcaatgtagccatcctctttgacacaaactgaagttcttcccactttccag  361000  Previous    Next  AGI:  At1g02050.1    Description:  chalcone and stilbene synthase family protein. similar to chalcone and stilbene synthase family protein [Arabidopsis thaliana] (TAIR:AT4G00040.1); similar to chalcone synthase family protein [Arabidopsis halleri subsp. gemmifera] (GB:AAZ81862.1); similar to chalcone synthase family protein [Arabidopsis halleri subsp. gemmifera] (GB:AAZ81867.1); similar to chalcone synthase family protein [Arabidopsis halleri subsp. gemmifera] (GB:AAZ81872.1); contains InterPro domain Thiolase-like; (InterPro:IPR016039); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328); contains InterPro domain Chalcone and stilbene sy Range:  from: 359117    to: 360518    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g02060.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G37230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45290.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73209.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 360918    to: 363094    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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