Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <-----------HVH21                                                  <---------SPL7                                                  --------->ORA47(1)                                                  ------>NtERF2                                                  <---------RAP2.6(3)                                                 --------->DEAR3(1)                       --------->GLK1(2)      ====================HOX2a_HOX2a                       --------->ARR14(2)     ===============HOX2a_HOX2a              --------->AHL20(1)              ------>ZmHOX2a(2)              --------->AHL20(2)      --------->ARR14(2)         ------------>CBF             <---------ARR14(2)         --------->MYB46(3)--------->LBD16   <---------GLK1(1)  --------->ZAT14      <---------ARR14(2)   --------->ARR14(2)  <---------ZAT14  --------->YAB1 ----------------->AGL2  --------->ZAT18  --------->AHL20(2) <---------GLK1(2) --------ANAC58 --------->YAB1    <-----------------AG------>ZmHOX2a(1)                          <--- --------ANAC46<---------YAB1     <-----------------AGL3                                         ---- --------ANAC58<---------AHL20(2) <-----------------AGL2                 <---------ANAC46      <----- -->At4g35610 <---------AHL20(1)  ----------------->AGL3   ------>ZmHOX2a(1)       --------->TOE2(3)   tgagtgaagtaaccaatataataaaaatccgagagaaccagatttggatcgccgtcctctcctctatatgaaatgacttatatatccttgaatagtggcg  337900                                                                       <---------ZAT18                                                                       <---------ZAT14                                                               <---------SPL7                                                           <---------WRKY18(1)                                                          --------->WRKY12                                                          --------->WRKY38(1)                                                          --------->ETT(2)                                                          <---------ETT(2)                                                          ----------->HVH21       <-----------HVH21                                                        --------->At4g35610    <---------LBD16          --------->ARR14(2)                           <-----------RAV1(1)     --------->LBD16        --------->LBD16                             <---------ARR14(2) --------->ABI4(2)   <---------      <---------LBD16                               --------->ARR14(2) --------->ZAT14   --------->At4g35610 ---NtERF2<---------ARR14(2)         <---------ICU4 ------->TEIL  <---------LBD16--------->LBD16 ----->At5g28300          <------MYB83             <---------CCA1(2)--------->LBD16--------->WRKY18(1) ----ANAC46               <------MYB46(1)    <---------ARR14(2)<-----------HVH21--------->LBD16   gtaatgtctccggatttgagggcatagttggtattttcaaaatgacgaattctgtatctgttgaccgtcccggtggactcccccggtcatgagctttcta  338000                     <----------DOF2                    <---------ANAC58                       --------->AHL20(2)                    <---------ANAC58                       <---------AHL20(2)              --------->AHL20(2)                        <---------ICU4                             <-              --------->AHL20(1)                        --------->ATHB12                           --              <---------AHL20(2)                       <---------ATHB12                          ----              <---------AHL20(1)                       --------->ICU4      ----------->GT1     <-----             <---------AHL20(2)                        <---------YAB1      <---------ANAC55(2) ------             --------->AHL20(2)           ----------->GT1 <---------WOX13(1)              <---------ANAC46         ------>ZmHOX2a(1)          <---------ZAT6 --------->ANAC58  --------->MYB46(3)   <---------ANAC58 -DOF2  --------->TOE2(3)      --------->YAB1      --------->ANAC58----------->RAV1(1)    <---------ANAC58   gcttatttatcctaaataaattgcttttggtaatagtagtgatatcgaaaaacacccatgattaattcccaacaaatatgtaaatttgttttgcgagtaa  338100                                                                                     <---------ATERF1(1)                                                                         <---------ICU4                                                                        --------->ICU4                                                                        <---------YAB1              -                                                                     ------------>ATHB5       -------                                                                     ----------------->AGL1   <------ ---------ID1                                                 <---------ATHB51    ------->GAMYB ----- --------->GT1                                                --------->ICU4   --------->MYB52(1)  <- ------->GT1                                              --------->LBD16--------->ATHB51     <------ ----ZAT14                         <---------ICU4        --------->ANAC55(2)--------->YAB1   -------- ---->DOF2      --------->YAB1    <---------YAB1        <---------LBD16 <---------ATHB51     --------   agagaaaaacaccttcaacaatagtttttgaatttcattatcgccattgaatttcatttgcggaataatgggccataattgtaacggaggcccaatatta  338200 --------->DOF2                         --------->LBD16 -->AHL20(2)               <-----------RAV1(1)                        --------->At4g35610 ---AHL20(2)               <---------ZAT6                          ---------->DOF2 ---->YAB1     <---------bZIP60(2)      ------>NtERF2          ---------->DOF2         <---------ALFIN1 --------AHL20(2)--------->ALFIN1      --------->ANAC58 <---------At4g35610        <---------At4g35610 ---YAB1       <---------ANAC46        --------->ANAC58 --------->ZAT14            --------->At4g35610 ->TOE2(3)   <---------ZAT14           --------->ANAC46 <---------ZAT14  --------->MYB52(1)*TSS ->YAB1      --------->ZAT14--------->ZAT14          ---------->DOF2  <---------At4g35610 --------->DEAR3(1)   ataaaaggcccatagtgaagtggtctctagtgttgtctaatccgccagacagaagtagagcagagcaaagaaagctaacagagtcatctccaccgctcta  338300                                                                               <---------DAG2                                                                        --------->At4g35610                                                                        <---------ZAT2                                                                        <---------At4g35610                  --------->At4g35610                                ------>ZmHOX2a(1)                  <---------ZAT2                   <---------DAG2    --------->LBD16           ------                  --------->ZAT2     <---------AtLEC2         --------->ARR14(2)             --------             <---------ALFIN1        <---------ANAC58         <---------GLK1(2)<----------DOF2 <-----             --------->ANAC58        <---------ANAC58<---------CCA1(2)  --------->ZAT2       <-------             --------->ANAC58    <----------DOF2   <----------DOF2 ----------->RAV1(2)      <--------             --------->ANAC46  ------->TEIL   <---------At4g35610  <---------LBD16          ---------   aattctaatctatccacaccagctctgtctatgaactttgcttggctcatctcctttatctccagtttctcctgagctctgctttttgtaagtaatcatc  338400                                                                                              <------NtERF2                                                                                              -------                                                                                             <-------                                                                                             ------>NtERF2                                                                                             <------NtERF2                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                       <----------DOF2                   <-------TEIL       ---------   --------->At4g35610      ------>ZmHOX2a(1)                --------->HSFB2a(2)            --------- --->At4g35610             <-----------------AGL1            --------->HSFC1(1)            --------->ERF1 ->YAB1                   ------>ZmHOX2a(2)                  <---------HSFC1(1)            --------->RAP2.3(1) ----YAB1               <---------ARR11(3)          <---------ANAC58  <------MYB46(1)  --------->SPL7 --ICU4                 --------->ARR11(3)          <---------ANAC58  <------MYB83 <---------ATHB12 -ATHB12       ------->TEIL--------->TOE2(3)   --------->YAB1<---------HSFB2a(2)XXXXXXXXXXXXXXXXXXXXX >ICU4     --------------->AtSPL8 --------->MYB59   <---------ANAC46 --------->MYB59--------->YAB1   agagaagctcaattctgtacttgtatgatcctcaattaggcctttgaattcatgacttgttttctagagattaggttcatgtgaaatcatacggccgcca  338500    <------------------------ANAC81  <---------TOE1(3)  <---------TOE2(3)                                              --------->At4g35610  --------->MYB59                                                <---------At4g35610 ---------->AGL3                                            <---------ZAT14 --RAP2.6(3)                                               <---------ZAT6 >ANAC58                                                   --------->ALFIN1 >DEAR3(1)                                             --------->ZAT14 >RAP2.6(2)                                            --------->ZAT18 >ANAC58<-----------GT1                                <---------ZAT14 -ATERF1(2)                                            <---------ZAT18                           ---- >ATERF1(2)                                          --------->At4g35610                         ---- >RAP2.3(2)                                          <---------At4g35610                         ---- >RAP2.3(3)                                    <---------At4g35610                             <----- >DREB2C(2)        --------->ARR11(3)          --------->At4g35610                        --------->ATHB12 >RRTF1(2)   <----------DOF2        --------->YAB1--------->At4g35610                     <---------ICU4 >MIR2935---------->ID1  <---------TOE2(3)<---------AHL20(2)--------->ZAT14          <---------MYB52(1)   aatttaggtttttctcttttagttcttgaggtatacaatgggaatttatagctgcagcgcagtgttgagcttcggcttgaaatgtccattagttattgca  338600                                       <---------ANAC55(1)                                       <---------ANAC58       <----------DOF2     --------->ANAC58           --------->TOE2(3) ----->ANAC58              --------->ANAC46           --------->YAB1                    <---------ARR14(2) ----->ANAC58              --------->ANAC58--------->HSFB2a(2)       <---------MYB46(3) --------->GLK1(2) ----->ANAC46     <---------TOE1(2)    <---------ANAC46            <---------ZAT14   <---------ANAC58 ----AtLEC2       <---------TOE2(2)    <---------ANAC58            --------->ZAT14   <---------ANAC58   aggcataggctttaccatcgcatgtttagacgaaacccattacttgtagaatcccatcttaataggctctgtagttgcaaatgtaatgcgagtctggcca  338700                                                                   <---------At4g35610                                                                  --------->ARR14(2)                                                                  ------->TEIL                                                           <------MYB83                                            --------->ATHB12      --------->GLK1(2)                                           <---------AHL20(2)     <---------ARR14(2)                                           <---------YAB1  <------MYB46(1)                       <-------TEIL --------->LBD16       <---------AtMYB61                      <---                    --------->At4g35610 <---------ZAT6 <-----------RAV1(1)                   <-------         <---------ANAC46     ---------->DOF2     <---------At4g35610----------->HVH21     --------->WOX13(1)   ttggcgaagttgtggagaaggaagatgcagagcaaagccgtagttttaattgggctgatgttggtctgaatctgacagaagaacaagacgaggcaatcac  338800  Previous    Next  AGI:  At1g01970.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to NFD5 (NUCLEAR FUSION DEFECTIVE 5), transcription factor [Arabidopsis thaliana] (TAIR:AT1G19520.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24489.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 338291    to: 340077    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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