Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    ------>ZmHOX2a(2)                                                --------->ARR11(3)                                                <---------ARR11(3)                        <---------ARR14(2)    ----------->ARR10                        --------->MYB52(1)    --------->WRKY12            ---------->DOF2                <---------ANAC58               <-----------GT1       ------->TEIL   ------->TEIL         <---------ANAC46      --------->GLK1(1)           <-------   <---------------AtSPL3                  <---------ANAC58    <------ZmHOX2a(1)          <-------TEIL   <---------------AtSPL8               <--------P====================HOX2a_HOX2a  <-----------GT1 ----->GT1--------->DOF5.7(2)        --------->ALFIN1     --------->CCA1(2)     <---------ICU4   agaaatttgtacgttaaggcgatgaatatcggacttgaagtggtagcgttgatcttgaagagacaggaactcaattttacaagtattacaggtccatctg  322600                                            --------->HSFB2a(2)                                           <---------LBD16                                          ==============HOX2a_HOX2a                                          ------>ZmHOX2a(1)                                       ------>NtERF2            <---------SPL7                                      <---------ALFIN1         <---------MYB46(3)                                    <---------ATERF1(1)        <------MYB46(1)                                    ------>NtERF2              <------MYB83                    <---------GLK1(1) --------->DEAR3(1)      --------->ALFIN1           ------>NtERF2           <---------ALFIN1           <---------AtMYB61           --------->ORA47(1)      --------->ANAC46         <---------ANAC46           <---------RAP2.6(3)     --------->DEAR3(1)       <---------ANAC58           <-----------HVH21     =======================HOX2a_HOX2a          --------->DEAR3(1)     <---------ATERF1(1)        <---------ANAC58                      ---       --------->ANAC58          ------>ZmHOX2a(1)         <---------MYB46(3)               ---------       --------->ANAC58       ==========================HOX2a_HOX2a                         <--------       --------->ANAC46       ------>ZmHOX2a(1)           <---------ANAC46                 <------ZmHOX2a(1) --At4g35610   ------>ZmHOX2a(1)<---------ALFIN1 ------>ZmHOX2a(2)                     --------->LBD16   tccaaaatcacgccgtccttggaactcttatcctcctccgcctcctctggatcgaaagttttgggtggtccgaatgccgattgagtctccgaaggattcg  322700                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                            <------NtERF2                                                                                           ------>NtERF2                                                                                         --------->ABI4(1)                                                                                         <------NtERF2                                                                                         <---------ABI4(2)                                                                                         ------>NtERF2                                                                                        <---------ATERF1(1)                                                                                        <---------ALFIN1                                                                                       <------NtERF2                                                                                       --------->ATERF1(1)                                                                                       <---------DEAR3(1)                                                                                      <---------DEAR4(2)                                                                                      --------->ATERF1(1)                                                                                      <---------At4g35610                                                                                      --------->DREB2C(1)                                                                                      --------->At4g35610                              --------->ANAC58                                        ------>NtERF2                              --------->ANAC58                                        <---------ATERF1(1)                           <---------MYB52(1)                                        --------->DEAR3(1)                           <------NtERF2                                             <---------ATERF1(2)                          ------>NtERF2                                              --------->RAP2.6(2)                          <---------RAP2.6(3)                                        --------->ATERF1(2)                          <-----------HVH21                                          --------->ANAC46                         --------->RAP2.3(3)                                         <---------DEAR3(1)                         --------->ATERF1(2)                                        --------->ATERF1(1)       --------->O2      --------->RAP2.6(2)                                        --------->RAP2.3(1)       =================bZIP_DOF                                                    <---------RAP2.6(2)       --------->TGA1a   --------->DEAR3(1)                                        --------->DREB2C(1)       <---------O2      <---------ATERF1(2)                                       <---------ATERF1(1)       <---------TGA1a   --------->RAP2.3(2)                                       --------->ATERF1(1)  --------->DEAR3(1)     --------->RRTF1(2)                                        <---------DREB2C(1)  ===============MYC_MYB --------->RRTF1(3)                                      <---------RAP2.6(2)  --------->DREB2C(2)   --------->ERF1                                          --------->ATERF1(1)  ------->GAMYB         --------->RAP2.3(1)                                    --------->ABI4(2)  --------->DEAR4(1)    --------->RRTF1(1)                                     <---------MYB46(3)  --------->At1g77200  --------->LBD16                                         --------->MYB55(2)----  --------->ANAC46     ------>NtERF2                                          <---------AtMYB61  <---  ----------->HVH21   --------->ANAC46                                        --------->ALFIN1 <----- --------->DEAR3(2)<---------ARR14(2)                                  ------>MYB46(1)<------NtERF2 - --------->MYB46(3)--------->ARR14(2)                                  ------>MYB83<------NtERF2----- ------>MYB46(3)  --------->GLK1(1)                                   --------->WOX13(1)--------->DEAR3(1) >ARR14(2)        <---------GLK1(1)                         <---------LBD16   <---------DEAR3(1)<---- -ARR14(2)   ---------->DOF2  <<<<<<<<<<WRKY18    ----------->GT1   ----------------->AGL1<---------DEAR3(1)   acaaccgacacgagtcaaagaaatccgccgtcaagtcaaatatcgatcgaggctgtttatattctggattaccaatctcggtggtggccgccgcgccggt  322800          --------->YAB1          <---------ICU4          -------->HAHB4         --------->ICU4         <---------ATHB51       --------->YAB1      --------->AHL20(2)     <---------MYB52(1)  <------NtERF2 --ATERF1(2)                                                                                       -- --DEAR3(1)                                                                                     <---- ->DEAR3(1)                                                                                   <------ ->ATERF1(2)                                                --------->ALFIN1                  <------ ----->ABI4(2)                                              *TSS                              <------ ------MYB46(3)                             --------->ARR14(2)   <---------ARR14(2)        --------->GLK1(2) ----MYB52(1)                      ------>ZmHOX2a(1)   <---------MYB52(1)                  --------->ARR14(2) -------->ETT(2)                  <---------MYB59<---------ARR14(2)        <----------DOF2 <---------ARR14(2) ---->ALFIN1<---------YAB1     <-----------GT1----------------->AGL1  ---------->DOF2 <-----------GT1 -----AtMYB61            <---------WOX13(1)<---------MYB52(1)    --------->ARR14(2) --------->CCA1(2)   ggtcgccattaattatgaattggacggattgattttcctaacaccggtaccgataccgataagtgtggatttgaaagctttgtgagataaacgattccgt  322900                                                                                   --------->HSFB2a(2)                                                                                  ===================                                                                                  ------>ZmHOX2a(2)                                                                                 <------ZmHOX2a(2)                                                                                --------->ARR11(3)                                                                    <---------DEAR3(1)                                                                   --------->ATERF1(1)                                                                  <---------ERF1<---------ARR11(3)                                                                  ------>NtERF2 --------->ARR14(2)                                                                  <---------ATERF1(1)                                                                  <---------ORA47(2)                                                                  <---------DEAR4(2)                                                                  <---------RAP2.3(1)                       <---------ICU4                            <---------RAP2.6(2)                    --------->TOE2(3)                            <---------RAP2.3(2)                   <-------TEIL                                  <---------RAP2.3(3)    --------->MYB46(3)        --------->TOE2(3)                                        <---------DEAR3(1)<---------HSFB2a(2)      <---------AHL20(2)        ---------->DOF2         <--------ATHB1          <---------ARR14(2) --------->GT1     ------>ZmHOX2a(2)                    --------->YAB1          <---------AGP1 -----MYB52(1)    <------ZmHOX2a(2)                    <---------ATHB51     ---------->DOF2   ------- ---ANAC58       --------->ARR14(2)     <-----------------AGL1--------->ANAC46  <---------ARR14(3) ---ANAC46       ------->TEIL <---------YAB1       ------------>CBF<------NtERF2--------->ARR14(3)<-- ---ANAC58       <---------ARR14(2) --------->ALFIN1   <---------ATHB12--------->AtLEC2 <---------MYB52(2)   tttgttattttcttaaatggatccataatgtcattaaagtggcccatataaggcccaataatacaaggcggcgatgcagaaagatctcgaacgaacaaaa  323000                                                                          ----------->RAV1(1)                 xxxxxxxxxxxxxxxx>smallRNA(i)                          --------->ANAC46                --------->ANAC58                                       --------->ANAC58                --------->ANAC58                                       --------->ANAC58                --------->ANAC46                                  <---------ARR14(2)     --------->ANAC58                                             --------->ARR14(2)     --------->ANAC58      *TSS                                 <----------DOF2   ---------->DOF2----------->HVH21                            <---------ANAC46 ==================HOX2a_HOX2a<---------AHL20(2)               <---------ANAC58              >>>>>>>> --->DOF2   ------>ZmHOX2a(1) --------->AHL20(2)     <---------ZAT2   --------->LBD16    <---------MYB52(1) --------ID1<---------HSFB2a(2)           ---------->DOF2      <---------ANAC58 --------->YAB1   gcgccaaaagcatcctagacgcgactgagaaaataaatatagaagaaagcctctctgctcgttttgcgtttccgagcaacaatggtgagtcgtttgtcca  323100               <----------DOF2            ---------->ID1        <---------MYB52(1)                                                                      <----      <---------MYB46(3)                                                                        -----      --------->MYB52(2)                                                                       <-----     <---------TOE1(2)                                                                --------->LBD16    <---------MYB52(1)                                                                ------>ZmHOX2a(1)  --------->MYB52(2)                              <---------AGP1                  <---------ARR14(2)-  <---------MYB46(3)      >>>>>>>ZML2    <---------AHL20(2)          --------->AHL20(2)        ------ >>>>>>>>>LFY  ------>ZmHOX2a(1)         --------->AHL20(2)          <---------AHL20(2)     <--------   ttgttcgttcgtttgtcctttgttcgttctagtcagttttttttttaatatagttctggcgatatttgtatttatatgttcgagtttcctggttttgatt  323200                                 <---------bZIP60(1)                                 --------->bZIP60(1)                         --------->TOE2(2)       --------->DOF5.7(2)    ----------->HVH21       --------->At5g28300   <-----------HVH21                                    --------->MYB52(2)      <------MYB46(1)    --------->TOE1(2)                    --------->ARR14(2)  ----------->GT1      <------MYB83      <---------ZAT2                        <---------ARR14(2)<--------P      ----------->GT1   ----------->RAV1(2)              <---------ANAC46       <---------MYB52(1) -----ICU4             ------->TEIL                      <---------bZIP60(2) <---------TOE2(3) ---->ATHB12           --------->GLK1(2)                 <---------O2        <---------TOE1(3) ------ ----YAB1           --------->ANAC46                  ----------->TGA1   <---------ZAT14       ------ -------->ZAT14     --------->ANAC58                  ----------->HVH21  --------->At4g35610   <----- --->ICU4           --------->ANAC58          --------->ARR11(3)         <---------At4g35610   <----- -YAB1<---------DEAR3(2)--------->ZAT2        <---------ARR11(3)        --------->ALFIN1   --------->ANAC46   attgcagtcggtaactttgcacacgaacctgggtgacatcaagtgcgaaatcttctgtgacgaggttcccaagagtgctgaggttagttattcactcagc  323300                                                                  <---------MYB52(2)                                                            <---------TOE2(3)                                                        <---------At4g35610                                                     <-----------------AGL1 --->At4g35610                                       ----------------->AGL1 --->ZAT2                     <----------DOF2        <---------ZAT18              <-----------GT1 ----ZAT2            --------->At4g35610             <---------ZAT14           --------->YAB1 ----At4g35610       <---------At4g35610             --------->ZAT14<-----------GT1              <---   tcatgtttctcggtttcgatttgagctgttttctttgaattgtttacaaaatcagtccagttgaggcaaataacaaaacaatattcactaggttatctag  323400                            <---------ANAC58                            <---------ANAC58                      <---------ANAC46                    --------->ZAT2                    <---------ZAT2                            <---------LBD16  <----------DOF2-------                <-----------RAV1(1)                       ------>ZmHOX2a(1)   <---------ICU4 <------- ------ZAT6   ----------->RAV1(2)                <-----------GT1          <---------AHL20(2) <-------   tgtccaattagctattacctggtgctgggttcttgtattgtatggatgatttttcttctccttctctggattgtttttaatctttaggcgaaattagggt  323500  Previous    Next  AGI:  At1g01930.1    Description:  zinc finger protein-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO24397.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Ankyrin (InterPro:IPR002110) Range:  from: 319836    to: 322860    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g01940.1    Description:  peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein. similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT5G67530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24396.1); contains InterPro domain Cyclophilin-like (InterPro:IPR015891); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; (InterPro:IPR002130) Range:  from: 323027    to: 324917    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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