Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     ------>ZmHOX2a(2) <---------ARR11(3) ----------->RAV1(1)                             --------->AHL20(2) ---->At4g35610     ------->GAMYB                     <----------DOF2            --------->ATHB51 ---->ZAT2          <---------ALFIN1                  <---------DAG2<---------AHL20(2) -----ZAT2         --------->MYB46(3)   --------->ANAC58            <---------YAB1 -----At4g35610   -------->P            --------->ANAC58     <-----------GT1     --------->AHL20(2) >ANAC46--------->ANAC46   <---------TOE2(3)    ----------->HVH21  --------->AHL20(2)          ------   cttgatctacaaatcacagcaaccacattaaggcattggaaaacgaaattgtgacactttttttttccatataattgctcgaataatttagtcggaagag  322500                                                  ====================HOX2a_HOX2a                                                <---------ARR11(3)                                                --------->ARR11(3)                        --------->MYB52(1)    --------->WRKY12                        <---------ARR14(2)    ----------->ARR10            ---------->DOF2                <---------ANAC58       ------->TEIL   ------->TEIL         <---------ANAC58      --------->GLK1(1)           <-------   <---------------AtSPL3                  <---------ANAC46    <------ZmHOX2a(1)   <-----------GT1   <---------------AtSPL8               <--------P------>ZmHOX2a(2)       <-----------GT1 <-------TEIL ----->GT1--------->DOF5.7(2)        --------->ALFIN1     --------->CCA1(2)     <---------ICU4   agaaatttgtacgttaaggcgatgaatatcggacttgaagtggtagcgttgatcttgaagagacaggaactcaattttacaagtattacaggtccatctg  322600                                            --------->HSFB2a(2)                                           <---------LBD16                                          ==============HOX2a_HOX2a                                          ------>ZmHOX2a(1)                                       ------>NtERF2            <---------SPL7                                      --------->DEAR3(1)       <---------MYB46(3)                                    <---------ATERF1(1)        <------MYB46(1)                                    ------>NtERF2              <------MYB83                    <---------GLK1(1) <---------ALFIN1        <---------AtMYB61           <---------RAP2.6(3)     --------->ANAC46           --------->ALFIN1           --------->ORA47(1)      <---------ALFIN1         <---------ANAC58           <-----------HVH21       --------->DEAR3(1)       <---------ANAC58           ------>NtERF2         <---------ATERF1(1)        <---------ANAC46          --------->DEAR3(1)     =======================HOX2a_HOX2a                               ---       --------->ANAC58          ------>ZmHOX2a(1)         <---------MYB46(3)               <--------       --------->ANAC46       ------>ZmHOX2a(1)           <---------ANAC46                  ---------       --------->ANAC58       ==========================HOX2a_HOX2a                        <------ZmHOX2a(1) --At4g35610   ------>ZmHOX2a(1)<---------ALFIN1 ------>ZmHOX2a(2)                     --------->LBD16   tccaaaatcacgccgtccttggaactcttatcctcctccgcctcctctggatcgaaagttttgggtggtccgaatgccgattgagtctccgaaggattcg  322700                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                            <------NtERF2                                                                                           ------>NtERF2                                                                                         --------->ABI4(1)                                                                                         <------NtERF2                                                                                         ------>NtERF2                                                                                         <---------ABI4(2)                                                                                        --------->DEAR3(1)                                                                                        <---------ATERF1(1)                                                                                       --------->ATERF1(1)                                                                                       <------NtERF2                                                                                       <---------DEAR3(1)                                                                                      <------NtERF2                                                                                      --------->ATERF1(1)                                                                                      ------>NtERF2                                                                                      <---------ATERF1(1)                                                                                      <---------At4g35610                              --------->ANAC58                                        --------->At4g35610                              --------->ANAC58                                        <---------DEAR4(2)                           <------NtERF2                                             --------->ANAC46                           <---------MYB52(1)                                        --------->RAP2.6(2)                          <---------RAP2.6(3)                                        <---------ATERF1(2)                          <-----------HVH21                                          <---------DEAR3(1)                          ------>NtERF2                                              --------->ATERF1(2)                         --------->RRTF1(3)                                          --------->DEAR3(1)                         --------->RAP2.3(3)                                        --------->ATERF1(1)       =================bZIP_DOF                                                    <---------RAP2.6(2)       <---------TGA1a   --------->RAP2.3(2)                                        --------->RAP2.3(1)       --------->TGA1a   --------->RRTF1(2)                                        --------->ATERF1(1)       --------->O2      --------->ATERF1(2)                                       --------->DREB2C(1)       <---------O2      --------->DEAR3(1)                                        <---------ATERF1(1)  --------->ANAC46       <---------ATERF1(2)                                       <---------DREB2C(1)  ------->GAMYB          --------->RAP2.6(2)                                     <---------RAP2.6(2)  --------->At1g77200   --------->RRTF1(1)                                      --------->ATERF1(1)  --------->DEAR3(1)    --------->ERF1                                         <---------MYB46(3)  --------->DREB2C(2)  ------>NtERF2                                           --------->MYB55(2)   -  ===============MYC_MYB--------->RAP2.3(1)                                    --------->ABI4(2) ----  --------->DEAR4(1)   --------->LBD16                                        <---------DEAR3(1) <---  ----------->HVH21   --------->ANAC46                                        --------->ALFIN1  ----- --------->MYB46(3)<---------ARR14(2)                                  ------>MYB83<------NtERF2<---- --------->DEAR3(2)--------->ARR14(2)                                  ------>MYB46(1)--------->DREB2C(1) ------>MYB46(3)  --------->GLK1(1)                                   --------->WOX13(1)<---------ALFIN1 -ARR14(2)        <---------GLK1(1)                         <---------LBD16   <---------AtMYB61<----- >ARR14(2)   ---------->DOF2  <<<<<<<<<<WRKY18    ----------->GT1   ----------------->AGL1<---------DEAR3(1)   acaaccgacacgagtcaaagaaatccgccgtcaagtcaaatatcgatcgaggctgtttatattctggattaccaatctcggtggtggccgccgcgccggt  322800          --------->YAB1          -------->HAHB4          <---------ICU4         --------->ICU4         <---------ATHB51       --------->YAB1      --------->AHL20(2)     <---------MYB52(1)  <------NtERF2 --DEAR3(1)                                                                                        -- --ATERF1(2)                                                                                    <---- ->ATERF1(2)                                                                                  <------ ->DEAR3(1)                                                 --------->ALFIN1                  <------ -------->ETT(2)                                            *TSS                              <------ ----->ABI4(2)                              --------->ARR14(2)   --------->ARR14(2)        --------->GLK1(2) ------MYB46(3)                    ------>ZmHOX2a(1)   <---------MYB52(1)                  --------->ARR14(2) ---->ALFIN1<---------YAB1        <---------MYB59<---------ARR14(2)        <----------DOF2 <---------ARR14(2) -----AtMYB61                  <-----------GT1----------------->AGL1  ---------->DOF2 <-----------GT1 ----MYB52(1)            <---------WOX13(1)<---------MYB52(1)    <---------ARR14(2) --------->CCA1(2)   ggtcgccattaattatgaattggacggattgattttcctaacaccggtaccgataccgataagtgtggatttgaaagctttgtgagataaacgattccgt  322900                                                                                   --------->HSFB2a(2)                                                                                  ------>ZmHOX2a(2)                                                                                  ===================                                                                                 <------ZmHOX2a(2)                                                                                --------->ARR14(2)                                                                    <---------DEAR3(1)                                                                   --------->ATERF1(1)                                                                  <---------ERF1<---------AGP1                                                                  <---------ATERF1(1)                                                                  <---------DEAR4(2)                                                                  <---------RAP2.3(1)                                                                  <---------ORA47(2)                                                                  ------>NtERF2 --------->ARR14(3)                       <---------ICU4                            <---------RAP2.6(2)                    --------->TOE2(3)                            <---------RAP2.3(3)                   ------>ZmHOX2a(2)                             <---------RAP2.3(2)    --------->MYB46(3)        --------->TOE2(3)                                        <---------DEAR3(1)<---------HSFB2a(2)      <---------AHL20(2)                                --------->YAB1          <---------ARR14(3) --------->GT1     <-------TEIL ---------->DOF2         <--------ATHB1          --------->ARR11(3) -----MYB52(1)    <------ZmHOX2a(2)                    <---------ATHB51     ---------->DOF2   ------- ---ANAC58       ------->TEIL <---------YAB1       ------------>CBF<------NtERF2<---------ARR14(2) ---ANAC46       --------->ARR14(2)     <-----------------AGL1--------->ANAC46  <---------ARR11(3)<-- ---ANAC58       <---------ARR14(2) --------->ALFIN1   <---------ATHB12--------->AtLEC2 <---------MYB52(2)   tttgttattttcttaaatggatccataatgtcattaaagtggcccatataaggcccaataatacaaggcggcgatgcagaaagatctcgaacgaacaaaa  323000                                                                          ----------->RAV1(1)                 xxxxxxxxxxxxxxxx>smallRNA(i)                          --------->ANAC58                --------->ANAC58                                       --------->ANAC46                --------->ANAC58                                       --------->ANAC58                --------->ANAC46                                  --------->ARR14(2)     --------->ANAC58                                             <---------ARR14(2)     --------->ANAC58      *TSS                                 <----------DOF2   ---------->DOF2----------->HVH21                            <---------ANAC58 ==================HOX2a_HOX2a--------->AHL20(2)               <---------ANAC46              >>>>>>>> --->DOF2   <---------HSFB2a(2)           ---------->DOF2      <---------ANAC58 --------->YAB1 --------ID1------>ZmHOX2a(1) <---------AHL20(2)     <---------ZAT2   --------->LBD16    <---------MYB52(1)   gcgccaaaagcatcctagacgcgactgagaaaataaatatagaagaaagcctctctgctcgttttgcgtttccgagcaacaatggtgagtcgtttgtcca  323100               ------>ZmHOX2a(1)            ---------->ID1        <---------MYB52(1)                                                                      -----      --------->MYB52(2)                                                                        <----      <---------MYB46(3)                                                                       ------     <---------TOE1(2)                                                                ------>ZmHOX2a(1)    <---------MYB52(1)                                                                --------->LBD16  --------->MYB52(2)                              <---------AGP1                  <---------ARR14(2)-  <---------MYB46(3)      >>>>>>>ZML2    --------->AHL20(2)          --------->AHL20(2)        <----- >>>>>>>>>LFY  <----------DOF2           <---------AHL20(2)          <---------AHL20(2)     <--------   ttgttcgttcgtttgtcctttgttcgttctagtcagttttttttttaatatagttctggcgatatttgtatttatatgttcgagtttcctggttttgatt  323200                                 <---------bZIP60(1)                                 --------->bZIP60(1)                         --------->TOE2(2)       --------->At5g28300    ----------->HVH21       --------->DOF5.7(2)   <-----------HVH21                                    ----------->GT1      ----------->GT1    --------->TOE1(2)                    --------->ARR14(2)  --------->MYB52(2)      <---------DEAR3(2)<---------ZAT2                        <---------ARR14(2)<---------MYB52(1)      <------MYB83      ----------->RAV1(2)              <---------O2           <--------P ---->ATHB12            --------->ZAT2                   <---------bZIP60(2) <---------TOE1(3) -----ICU4             --------->GLK1(2)                 <---------ANAC46    <---------TOE2(3) ------ --->ICU4           --------->ANAC58                  ----------->TGA1   <---------ZAT14       <----- -------->ZAT14     --------->ANAC58                  ----------->HVH21  --------->At4g35610   ------ ----YAB1           --------->ANAC46          <---------ARR11(3)         <---------At4g35610   <----- -YAB1<------MYB46(1)  ------->TEIL           --------->ARR11(3)        --------->ALFIN1   --------->ANAC46   attgcagtcggtaactttgcacacgaacctgggtgacatcaagtgcgaaatcttctgtgacgaggttcccaagagtgctgaggttagttattcactcagc  323300                                                                  <---------MYB52(2)                                                            <---------TOE2(3)                                                        <---------At4g35610                                                     <---------ZAT14 --->At4g35610                                       --------->ZAT14 ----At4g35610                <----------DOF2        <---------ZAT18<-----------GT1 --->ZAT2            <---------At4g35610             ----------------->AGL1       <-----------GT1 ----ZAT2            --------->At4g35610             <-----------------AGL1    --------->YAB1    <---   tcatgtttctcggtttcgatttgagctgttttctttgaattgtttacaaaatcagtccagttgaggcaaataacaaaacaatattcactaggttatctag  323400  Previous    Next  AGI:  At1g01930.1    Description:  zinc finger protein-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO24397.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Ankyrin (InterPro:IPR002110) Range:  from: 319836    to: 322860    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g01940.1    Description:  peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein. similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT5G67530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24396.1); contains InterPro domain Cyclophilin-like (InterPro:IPR015891); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; (InterPro:IPR002130) Range:  from: 323027    to: 324917    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version