Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------ATHB12    <---------ANAC58                                           --------->WOX13(1)    <---------ANAC58                  -- --->GAMYB                                ------>ZmHOX2a(2)     <-------TEIL                 -------- -----GT1--------->ANAC58         <---------YAB1    <---------LBD16             --------->TOE2(3)  <- -ATHB12 --------->ANAC58       --------->YAB1 --------->WOX13(1)<---------ANAC46           <--------   cgtatttatgcaagtactaaatctgacttcaaaatcaaaattgatccatcaatctgcggtttgaaattcgtgaatcagagaaccctaattcccaatgaga  315500                                                   <<<<<<<ZML2                                                --------->HSFB2a(2)                                                <---------HSFC1(1)                                                --------->HSFC1(1)                       --------->ARR14(2)       <---------HSFB2a(2)      --------->LBD16 ------>MYB46(1)         <------ZmHOX2a(2)     <-----------RAV1(2)                     --------->ARR11(3)     <---------LBD16  ------>MYB83           <---------ARR11(3) ------->AHL20(2)   <---------MYB59        --------->ANAC58 ->YAB1        --------->HSFC1(2)          --------->ANAC58        --------->At4g35610 --------AHL20(2) -------->P       --------->GLK1(2)               <---------At4g35610          ----- -ATHB12<------ZmHOX2a(1)          --------->ARR11(3)           ---------->DOF2---------->DOF2  -----   ttaaaatccaggagcgaaactaccaaattccctctaaaatctagcacgatctagaacaaaatcggagaaagcttaccatggcaaagagattagagaaacc  315600                                                                       --------->ICU4                                                                     <---------At4g35610                                                              ==============================HOX2a_HOX2a                                                              <---------MYB46(3)                                                            --------->ARR14(2)                    <--                                                           <------ZmHOX2a(1)                ---------                                                           ====================================HOX2a_HOX2a        --------->ALFIN1      <---------ANAC46         <---------At4g35610                <<<<<<<<<<<    xxxxxxxxxxxxxxxx>smallRNA(i)              <---------TOE2(3)  --------->ALFIN1     --------->ARR14(2)    ---------->DOF2          --------->At4g35610       --------->At4g35610<---------YAB1------>ZmHOX2a(2)  --------->MYB46(3)         <---------At4g35610>>>>>>>>>ARR2 <---------DEAR3(1)      <---------ARR14(2) ---->TOE2(3)        <---------ZAT14          <---------YAB1<---------ARR14(2)--------->MYB52(1)  <-- ---->TOE1(3) --------->ARR11(3) ---------->DOF2>>>>>>>>>ARR1 ------>ZmHOX2a(2)      <------ZmHOX2a(1)   ttgaaccaaagtgggagatttagtgaagcgttgctgaaaggcatcactaagattgtgagcaggatcggtggagatgatgagaacggaggatcgaacactg  315700                                                                                                   --                                                                                                 ----                                                                                            ---------                                                                                           <---------HSFB2a(1)                                                                                           --------->HSFB2a(1)                                                                                           --------->KAN4(1)                                                                                           <---------HSFC1(2)                                                       --------->DEAR3(1)                  <---------KAN4(1)                                                    --------->TOE2(2)                      --------->HSFC1(2)          <---------ANAC58           --------->ANAC46  ----------->HVH21                  <---------KAN4(2) -------ANAC58               <---------ANAC58       --------->TOE1(2)                    <---------GLK1(2) >ZAT6    <---------ANAC46   <---------ANAC46  <---------DAG2                         --------->HSFB2a(2) <<<<<<LFY<---------ANAC58   <---------ANAC58  <----------DOF2                        <---------HSFB2a(2) -------ANAC58          <---------AtLEC2<---------ALFIN1------>NtERF2        --------->GLK1(2)   <---   gcgagacaaattgcgagaattgaactgcatgtcgtcttcccaacacctcctttacctccgacgaaaacccatttaagagactcttggtccagaatgttct  315800                      --------->RRTF1(2)                      --------->RAP2.6(2)                      --------->ANAC46                      --------->RAP2.3(3)                      <---------ATERF1(2)                      --------->RAP2.3(2)                      --------->ATERF1(2)                      --------->DEAR3(1)                      --------->RRTF1(3)                      --------->DREB2C(2)                     --------->RAP2.6(1)                     --------->ERF1                     --------->ORA47(2)                     --------->RRTF1(1)                     --------->ATERF1(1)                    --------->LBD16                <---------ARR14(2)           ------>NtERF2           --------->LBD16         <---------LBD16        <---------ATERF1(1)        ------>NtERF2--------->RAP2.3(1)                                                          ---       --------->DEAR3(1)                                                                         ---      --------->ATERF1(1)                                                                         ---      <------NtERF2 --------->At4g35610                                                          ----     <---------RAP2.3(1)                                                                       <-----     <---------ATERF1(1)<------NtERF2                                                  <---------RVE1(1)     ------>NtERF2  <---------ATERF1(1)                                                <---------CCA1(1)  <-----------HVH21--------->ANAC46                                       --------->GLK1(1)   <------ <-----------RAV1(1)------>NtERF2            <---------CCA1(2)            <---------GLK1(1)   <------ ------->ZAT14  --------->ARR14(2)       <---------ANAC58                --------->ARR11(3)   <------ ----->ZAT14   --------->GLK1(1)         <---------ANAC58                <---------ARR11(3)  <------- >KAN4(2)--------->SPL7------>NtERF2 <---------ANAC58              >>>>>>>>>RAP2.2    --------->ARR11(3) ------ZAT14   <---------GLK1(1)     <---------ANAC58 --------->ZAT6 ---------->DOF2  <---------ARR11(3)   gtactgtcgcctccggcaaatccgccgccattgctaattccttgctcgtctctcttccactagtctcaatctaaagagctccttgttagatatttggcgt  315900                                               <---------ARR11(3)                                    --------->ATERF1(1)                                    <------NtERF2                                   ------>NtERF2                                   --------->ABI4(1)                                   <---------ATERF1(1)                                   <---------SPL7    ----------->GT1               --------->RAP2.3(2)  *TSS                            --------->DEAR3(1) ------>ANAC46           <----------DOF2  ------------>CBF ------>ANAC58   <---------ANAC46--------->ERF1--------->ARR11(3) ------>ANAC58  <------NtERF2    --------->ATERF1(1)                        <---------At4g35610 ----->SPL7     ------>NtERF2    --------->RAP2.3(1)                        --------->ZAT14 ----SPL7      <---------RAP2.3(1)--------->RAP2.3(3)                       --------->ZAT2 ---ANAC46    <---------DEAR3(1) --------->ORA47(2)                         --------->At4g35610 ---ANAC58   <---------LBD16     --------->DEAR4(2)                         <---------ZAT14 ---ANAC58<---------At5g28300  --------->ANAC46<---------AHL20(1)    --------->GLK1(1) --------AtSPL3------>NtERF2 <-----------GT1   --------->AHL20(1)    <---------GLK1(1)       <-------   acggaagagtttaactgcggcgagagacttttaacgccgcccggttcaatattttggttctcggttttgggatatcacagcagtcttggtttgatttttt  316000                                                      <---------ANAC46                                                      <---------ANAC58                                                      <---------ANAC58                                                    <---------ANAC58                                  ----------->GT1   <---------ANAC46                            <----------DOF2         <---------ANAC58     ----------->GT1                            <---------------AGL15   <------MYB83        --------->ANAC58                            --------------->AGL15   <------MYB46(1)     --------->ANAC58                         <-----------GT1     --------->AHL20(2)         --------->ANAC46         ---- --AHL20(2)<-----------GT1---------->ID1     <---------AHL20(2)  <-------TEIL              ----------   tggttatcgtttttcacttgttcaatttttctttttttgttaaaaatttaaatttggtgtgtttaagttcataaacgctaaataagcccatacaaaagcc  316100                                                                                    --------->ARR11(3)                                                                              --------------------->WRI1                                                                            <------NtERF2                                                                           --------->LBD16                                                                           ------>NtERF2                                                                          --------->DEAR3(1)                                                                          --------->ANAC46                                                                          --------->RAP2.6(2)                                                                          <---------ATERF1(2)                                                                         --------->RAP2.3(1)                                                                         <---------LBD16                                                                         --------->ATERF1(1)                                                                        ------>NtERF2  *TSS        --                                                                        <---------ATERF1(1)       <--                                                                       <---------DEAR3(1)         ---                                                                       --------->DEAR3(1)         ---                                                                      --------->ATERF1(1)     <------NtERF2                                                                     <---------ATERF1(1)    ---------                                                                     <-----------HVH21===============                --------->ANAC46     --------->ATHB12               --------->ANAC46<---------ARR11(3)        --------->ANAC58 <------------CBF                       <-----------GT1 <------------CBF <---     <---------REM1(1)<---------ANAC46<------------CBF      <-------GAMYB<------NtERF2------>ZmHOX2a(2) ------->RAV1(1)<---------YAB1      <---------YAB1         ----------->GT1--------->ATERF1(2)-------- >DOF2  --------->ANAC58 <---------ARR14(2)            <---------REM1(2)<---------RAP2.3(1)<---------LBD16   cacatagatgaagccattacgacagcgtattgtgagttacgattgaaaacccctctctactcggttaaacccgtcgccggcatattgatcttcgccggag  316200                                                             =================================HOX2a_HOX2a                                                             <---------LBD16                                                             ------>ZmHOX2a(2)                                                            ==================================HOX2a_HOX2a                                                            <------ZmHOX2a(2)                                                           <---------ARR14(2)                                                           --------->ARR14(2)                                                           --------->ARR11(1)                                                    <---------TOE1(3)<---------ANAC55(1)                                                   <-----------RAV1(2)                                                <---------ANAC58     --------->ANAC55(2)                                            <---------WOX13(1) --------->LBD16               --------            <---------At4g35610            <---------GLK1(2)--------->CCA1(2)                <------- ------->CCA1(2)                          --------->ATHB12 --------->AGP1                   <-------- -------ARR14(2)                        ============================HOX2a_HOX2a            ------>ZmHOX2a(2) ------>ARR14(2)    <----------ID1      ===========================HOX2a_HOX2a            <---------At4g35610 ------>ARR11(3)    --------->ANAC58    ------>ZmHOX2a(1)  --------->ARR11(3)            --------->ARR14(2) >DEAR3(1)  --------->At4g35610   <---------HSFB2a(1)    --------->MYB59                 <---------ARR14(2) ===HOX2a_HOX2a     --------->ANAC58  <-----------------AGL1--------->ARR14(1)         ------>ZmHOX2a(1) ---ZmHOX2a(1)  >>>>>>>>>TBF1     --------->HSFB2a(1)    ----------->ARR10     <-----------GT1 ->LBD16  <---------HSFB2a(2)    --------->DAG2 <---------ANAC58     <---------ANAC55(2) <---------ARR11(3)   gatatggcgatttcagaagaagaagccaaactcgaaaggttcctagattggcttcaggttagatccggattaagtgttgtttttcagtcctgatctgctg  316300                                                 ----------->GT1      --------->TOE2(3)         <---- ->At4g35610                           --------->At4g35610           --------->REM1(1)          ----- --At4g35610                           <---------At4g35610         ----------->RAV1(1)     ---------- ---RAV1(1)--------------------->WRI1<-----------RAV1(2)         <------NtERF2--------->GLK1(2)<-----   ctctatatcatggcattttgtgtttcgatctaatttcattcaggtgaatggaggtgaattaagaggctgcaacatcaaatattctgactccctaaaagga  316400  Previous    Next  AGI:  At1g01910.1    Description:  anion-transporting ATPase, putative. similar to anion-transporting ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G60730.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24465.1); contains InterPro domain Anion-transporting ATPase; (InterPro:IPR003348) Range:  from: 313215    to: 315902    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g01920.1    Description:  SET domain-containing protein. similar to ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G14030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38787.1); contains InterPro domain SET; (InterPro:IPR001214) Range:  from: 316187    to: 319644    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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