Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->ANAC58               <---------ANAC55(2)               --------->ANAC58                                                                 <----              <---------LBD16                    --------->ANAC58                              <-----            <---------SPL7                       --------->ANAC58                              ------          <---------------AtSPL3               <------ZmHOX2a(1)                          <------ZmHOX2a(1)       <-------TEIL                           <----------ID1                              ===========      <--------P                         <----------DOF2                            --------->HSFB2a(2)    ----------->GT1                   <---------AtMYB61     ---------->DOF2       <------ZmHOX2a(2) ----->HSFB2a(2)                 <---------DEAR3(1)     --------->TOE2(3)         ===============HOX2a_HOX2a ------HSFB2a(2)     ---------->DOF2--------->ALFIN1    --------->TOE1(3)        <---------ARR14(2) ----DOF2 <---------------AtSPL8<------NtERF2<---------TOE2(3)   <---------MYB46(3) <---------HSFB2a(2)   gagaagaggttgatagtacggaagaaagtgagtcggaggtgaggtttaaggacgaaacccttaacagcggtttcatgctgaacgatccagaaggagagat  308900                                                                          <---------ANAC58            --------->MYB52(2)                                            <---------ANAC58            <---------MYB46(3)                                    --------->LBD16            --------           <---------TOE1(2)                                     --------->HSFB2a(2)        <--------          <---------MYB52(1)                                     <---------HSFB2a(2)    <---------ATHB12 ------->GAMYB                                  <-------MYC3 <---------ARR14(2)    --------->ANAC58 --ZmHOX2a(2)                          --------->At4g35610   --------->ARR14(2)    --------->ANAC58 ----ARR11(3)                          <---------At4g35610  <---------GLK1(1)    <---------ALFIN1 --->ARR11(3)                      <-----------RAV1(1)   <---------At4g35610------>NtERF2 --------->WOX13(1) ==HOX2a_HOX2a              ---------->DOF2     ------->MYC3--------->GLK1(1)  <---------ALFIN1   caacagcgactcgtttgtttctgagaaaatcaaagccttgttgctgagcatatggtctcagcaaatcccagaaattgcctcccacacccattcaatcaaa  309000  --------->At5g28300  --------->LBD16  --------->ALFIN1 --------->MYB52(1)  <---------RAP2.6(3)          <------ZmHOX2a(2) <---------ANAC55(2)          <---------ARR11(3)                    <---------AHL20(2) <---------ANAC46 <---------At4g35610                               --------->AHL20(2) --------->ANAC55(2)   --------->At4g35610                  --------->DAG2 --------->RAP2.6(2)   <---------At4g35610            --------->ANAC58            --------->At4g35610 ->YAB1           --------->At4g35610     ---------->DOF2 ---------->DOF2  ---------->DOF2      ----- -ATHB12    --------->MYB52(1)--------->ARR11(3)      --------->ANAC58---------->DOF2    <------ZmHOX2a(1)   atgccgtaatagcctagcggagcggagcggaagatcacaaaccgaaaagcctaaaccagcaaaaggcgaattaaaagaaaaggaagccgaaggatagaat  309100                                                                              ------>NtERF2                                                                             <---------ALFIN1                                                                             ------------>AtMYB77                                                                             --------->DEAR3(1)                                                                            ----------->HVH21                                                                   --------->bZIP60(2)                                                                   --------->bZIP60(1)                                                                   --------->O2   <---------MYB52(1)                                                      <---------ICU4       ------>NtERF2                                                    <-----------TBP<---------bZIP60(1)                                                  --------------->AGL15   --------->ANAC58                                                  <---------------AGL15   --------->ANAC58                                                 <-----------------AGL3   ------->GAMYB <---------PCF2                                              <---------CCA1(2)<-----------HVH21  <---------ARR14(2)                                        <---------ANAC58       <-----------TGA1   --------->ARR14(2)               <---------ANAC58         <---------ANAC58      --------->bZIP60(2)<-------GAMYB          <---------MYB52(1)         <-----------RAV1(1)     <------NtERF2--------->RAP2.6(2)         <-------GAMYB           <---------ANAC58----------------->AGL2   --------->ANAC46    ----------->HVH21            <---------ANAC58<-----------------AGL2  --------->MYB46(3) ------->CBF   <---------ANAC58  <---------ANAC46----------------->AGL3  <---------MYB55(2) ---------   caatttctgaccgttatgcgagtcttgttggactcgcttgtgttgtgcctatctatttatggcatcgtcacatcacccgccacggttatgggcccaacaa  309200                                                                                               ------                                                                                               ------                                                                                               ------                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                            ---------                                                                                            <xxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <---------PCF2  --                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                <---------MYB52(1)<xx                                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                           <---------ALFIN1 <xxxxxxxx                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                   --------->AHL20(2)     --------->DEAR3(1)<xxxxxxxx           <---------ARR11(3)                     --------->AHL20(2)      --------->MYB46(3)<xxxxxxxx          <---------GLK1(1)                   <---------AHL20(2)       ------>ZmHOX2a(2)    <xxxxxxxx          --------->GLK1(1)                   --------->AHL20(2)      <------ZmHOX2a(2)    <xxxxxxxxx         <---------ARR11(3)                   --------->AHL20(1)     <---------ARR14(2)    --------->DEAR3(2)    --------->LBD16                      --------->AHL20(2)          --------->ARR14(2)   --------->PCF2  <---------LBD16--------->ZAT14     ----------->GT1            <-----------GT1<xxxxxxxxxxxxxxxxxxxsmallRNA(s2) -->RAV1(1)--------->ARR11(3)        <---------TOE2(3)        <---------AHL20(2)--------->ALFIN1 <xxx   ttagcccggatgatatctctgtagcccattaagtctattaagaaaaaataaaataaaaaactatttatacagatcgcccaccgtggggctcgaacccacg  309300                                <xxxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxsmallRNA(fl3)                               <xxxxxxxxxxxxxxxxsmallRNA(s)                               <xxxxxxxxxxxxxxxxsmallRNA(se3)                               <xxxxxxxxxxxxxxxxsmallRNA(i)                              <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                             <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <xxxxxxxxxxxxxxxxxsmallRNA(se3)                             <xxxxxxxxxxxxxxxxsmallRNA(i)                             <xxxxxxxxxxxxxxxxsmallRNA(s)                            ==============================RAV                            ------>MYB83                            ------>MYB46(1)                            <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            <xxxxxxxxxxxxxxxxsmallRNA(s) <---------ICU4                            <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ----------->GT1         ----------->RAV1(2)        <---------ANAC55(2) --->ANAC58                --------->MYB52(1)          --------->ANAC55(2) --->ANAC58                <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --->MYB46(3) <---------ANAC58<xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) >TOE1(2)     <---------ANAC58<xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxsmallRNA(i)      <---------MYB111(1)     <------MYB83 xxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxsmallRNA(fl3) <---------ZAT18                <------MYB46(1) xxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------->AtMYB61   --------->ZAT18                <---------MYB46(3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              *TSS<-------GAMYB xxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxsmallRNA(le3)<----------DOF2          <-----------RAV1(1)      <------------CBF xxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------AHL20(2)       ------- xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ------------>CBF          ------- xxxxxxxxxxxxsmallRNA(fl3)--------->MYB46(3)<----------DOF2 <-----------GT1                 ---------   accacaaggttaagagccttgcgctctaccaactgagctagacgggctttgttggttaagtattactctattcaattgtctagtagaaaaccagaaaagc  309400                                                    ----------->GT1                                                   --------->LBD16                             <---------WOX13(1)   <---------ANAC46                            <------------CBF     <---------LBD16       --------->ANAC58                           --------->ATHB12    <---------DEAR3(1)      --------->ANAC46                        --------->TOE2(3)     <---------ANAC58         --------->ANAC58    --------->ZAT14 -->ANAC58             <-----------------AGL3 <---------ANAC58       --------->ANAC46--------->HSFB2a(2) -->ANAC58            ------->TEIL           ------>NtERF2          --------->TOE1(2)<---------HSFB2a(2) ->DOF2           --------------->AtSPL8<----------CDC5     ----------->GT1 <-----------GT1<---------ZAT14   attatccaaaaatgtgcaagtatggaccttaattggtgtctcgctgaggcctgcgggtaaaatagtgaaacacacgataaaccatttctagactgtagtt  309500                                            <---------ARR11(3)                                   <-------TEIL                                  --------->CCA1(2)                                  --------->ARR14(1)                                 --------->ARR14(2)                                 <---------ARR14(2)                                 --------->ARR11(1)                                 --------->TOE1(2)                               ----------->ARR10                      --------->AHL20(2)    --------->ARR14(2)            ---------->DOF2        ---------->DOF2<---------AHL20(2)   <---------ARR14(2)      <------ZmHOX2a(1) ------>ZmHOX2a(1)    <---------AHL20(2)    --------->ARR11(3)  --------->ALFIN1 <----------DOF2  <---------AHL20(2)      ------->TEIL       <------ZmHOX2a(1)           --------->AHL20(2)   atccttttttaaaagggtattgaattaaatgagaagatacgatgaatatctccgaatttcataggagtgaggacatcaaagaaaaaaaaaaaaaaatgta  309600          <---------ANAC58          <---------ANAC55(2)          <---------ANAC46          --------->ANAC55(2)          <---------ANAC58          <---------ANAC55(1)       <---------SPL7                 <---------ZAT18                --------->ANAC58     --------->At4g35610              --------->ZAT14                --------->ANAC58     <------NtERF2                    <---------ZAT14        --------->ALFIN1       --------->ATHB12     <---------At4g35610       --------->ANAC58            <---------ANAC46--------->ATHB12    ------>NtERF2              --------->ANAC58          --------->ZAT14   <--------ATHB1    <---------DEAR3(2)       ---------->DOF2             --------->ZAT18  <---------ATHB12   <---------DEAR3(1)    <---------ANAC58           <---------YAB1   --------->ANAC46--------->TOE1(2)  <------NtERF2          <---------ANAC46        --------->ICU4 --------->ZAT18     --------->YAB1  --------->ATERF1(1)    <---------ANAC58 ---------->DOF2<---------ZAT14  --------->ICU4 <------ZmHOX2a(1)   agtcgtcggcttacgtgttcatacttggcttgaaagccagtacacaaagggattatgagtgaagtgtgaacaagcaatgatttgaatcataggaaatata  309700                                                                                                    -                                                   <-----------RAV1(1)                             --                                                  <---------YAB1                                   <-                                                <--------ATHB1                                    ---                                                <---------ICU4                                   ----                                                -------->ATHB1                                   ----                                                --------->ATHB51                                 ----                                                --------->ATHB12                           ------>MYB46(1)                                                --------->YAB1                             -------->P                                               <<<<<<<<<<AGL20                             ------>MYB83                                            ------------>ATHB5                            --------->MYB55(1)                                           ----------------->AGL3                        --------->MYB46(3)                                       --------->ANAC58   <---------MYB52(1)             <---------MYB111(1)                                       --------->ANAC58 <---------ANAC58                 <---------MYB55(2)                                       --------->ANAC46 <---------ANAC46                 <---------MYB59                            --------->ARR11(3) <<<<<<<<<<AGL22                           <-----------                            <---------AHL20(2) <<<<<<<<<<AGL24                           <---------MYB46(2)                            --------->AHL20(1) <---------YAB1                            --------->DEAR3(1)                            --------->AHL20(2) <---------ATHB12   <---------ALFIN1       <---------MYB111(2)                            <---------AHL20(1) <---------ATHB51<---------ZAT18           --------->AtMYB61                    <---------YAB1 <-----------HVH21    <---------ANAC58       <---------AHL20(2)----        ----------->GT1     <---------ARR11(3) --------->ICU4 ---------->ID1  --------->AHL20(2)<----   gaagaaaacttggttatatggtatgagtaatatattaagtcacgccccaattattgttgcgtttgtcccctccctctccatttaatgtccacctacccct  309800  Previous    Next  AGI:  At1g01880.1    Description:  DNA repair protein, putative. Identical to Flap endonuclease GEN-like 1 (GEN1) [Arabidopsis Thaliana] (GB:Q9LPD2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48900.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO24472.1); contains InterPro domain XPG N-terminal; (InterPro:IPR006085); contains InterPro domain XPG I; (InterPro:IPR006086); contains InterPro domain Helix-hairpin-helix motif, class 2; (InterPro:IPR008918); contains InterPro domain DNA repair protein (XPGC)/yeast Rad; (InterPro:IPR006084) Range:  from: 306558    to: 308991    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g01890.1    Description:  pre-tRNA. tRNA-Lys (anticodon: CTT) Range:  from: 309275    to: 309347    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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