Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                                 <---                                                                                                 <---                                                                                        <------NtERF2                                                                                        <----------CDC5                                                                                       --------->LBD16                                                                                       --------->At4g35610                                                                                      --------->RAP2.3(2)                                                   ------>MYB83                       --------->RAP2.6(2)                                                   ------>MYB46(1)             --------->ANAC46  ----                                            --------->LBD16               <----------DOF2        <---                              ---------->DOF2 <------ZmHOX2a(1)        ------>ZmHOX2a(1)<-----------RAV1(2)       <---------MYB59    <---------MYB46(3)<---------TOE1(2)    <-----------ARR10    --------->DEAR3(1) -----ARR11(3)      <<<<<<<<<<<<<<<<<LFY   --------->HSFB2a(2)   --------->ARR11(3)   ----------->RAV1(1) -->ANAC58          <------ZmHOX2a(1)      <---------HSFB2a(2)   <---------ARR11(3) --------->At4g35610 -->ANAC58       <---------ICU4        <-----------HVH21        <---------GLK1(2)   <---------At4g35610   actgtagcacctaaattgataaggacattggttaaagaaccagtcccaggaccaatctctaatacaaaatctccttctttcacatcagccgcagaggcta  305900    <-------GAMYB                                                                                   <   <---------MYB46(3)                                                                         ------- ----->STY1(2)                                                                                ------- ------ZAT2                       ----------->HVH21                                           <------ ------At4g35610                 <-----------HVH21                   --------->ALFIN1         <------ ----->ZAT2             --------->ANAC55(2)                        <---------ANAC58        ---------- ------STY1(2)          <---------ANAC55(2)                        <---------ANAC58---------->ID1 <--   gctggtcgttgatgtccgaattcaacatgtaatgctgtgacagacaattcaaaccattctctacttaatgggtgttcgaccatttgtctcaaacaaagct  306000                                                                    ------>MYB83                                                                    ------>MYB46(1)                                                                   --------->ORA47(1) <---------ARR11(3)                                               --------->DEAR3(1) --------->ARR14(2)                                              --------->MYB46(3) <---------ARR14(2)                                       <---------HSFB2a(2)                      <- ------ZmHOX2a(1)                                         --------->HSFB2a(2)                    <--- -->At4g35610                                         <----------DOF2                           ----- -->ZAT2                                ----------->RAV1(2)--------->LBD16                   <-------GAMYB ---ZAT2                               --------->GLK1(2) <---------LBD16          <---------WOX13(1) ---At4g35610               <---------ANAC46         --------->HSFB2a(1)         <---------ANAC58<--- >DOF2                      <---------ANAC58         <---------HSFB2a(1)         <---------ANAC58<--- -------TOE2(3)             <---------ANAC58   <------NtERF2     --------->DEAR3(2) --------->ATHB12-   gaggattttaagctatgtggtctacgagtggattgtgagagaacctggccgagggactttctgggaaaccgaccacgagaattgagtgatttgagggttg  306100                                                                   <---------RVE1(1)        --------->At4g35610                                        <---------CCA1(1)        ------>NtERF2        ----------->RAV1(2)                                       --------->ARR11(3)    ----------->HVH21      --------->YAB1                                              <---------ARR11(3)    --------->WRKY12     <---------ATHB12                                         <---------At4g35610     <----------DOF2     --------->ICU4                                          ----------->RAV1(1)------->GAMYB<------NtERF2 --------ZAT6               ----------->HVH21               --------->ANAC46 --------->MYB52(1) ------ANAC46            ------>NtERF2            <---------ANAC46<---------ARR14(2)--------->HSFC1(2) ---->ATHB12             --------->LBD16     ------>ZmHOX2a(1)<------NtERF2  ----------->RAV1(1) ------ANAC58 <---------DEAR3(1)         <-----------HVH21 <---------LBD16 --------->LBD16 <---------RAP2.3(3) ------ANAC58<---------At4g35610       --------->ANAC46 ---------->DOF2   --------->ANAC46 <---------DEAR3(1) ---------->GT1 <---------At4g35610<-----------HVH21<---------YAB1--------->ARR14(2)<---------HSFC1(2)   agtggtaatcatctgggctgctcttgccgcatgacaccttcacggtcctccgtcgtgataacgcggcagatatttcccccaacagaagctttgacggcga  306200                       <------NtERF2                      ------>NtERF2                      ----------->RAV1(1)                     --------->ETT(2)                    --------->RAP2.3(1)                    <------NtERF2                   <---------RAP2.3(1)                   ------>NtERF2               <---------ANAC46                  <---------RAP2.3(3)         ----------------------->TaNAC69(2)                  <---------ANAC46            <---------At4g35610                  <---------DEAR3(1)          <------NtERF2                 --------->RAP2.6(3)         <---------MYB46(3)      <---------ICU4                --------->MYB52(1)          <---------RAP2.6(2)     <---------YAB1                 <-               ----------->HVH21    <-------GAMYB                 --------->YAB1                   --               ----------->TGA1     <---------At4g35610  <-----------GT1                 <-----------GT1      --------->LBD16----------->HVH21    <---------MYB46(3)     <-------TEIL          *TSS     <----    <---------LBD16<---------ATERF1(1)   <---------AtMYB61<---------At5g28300          <---------ATHB12   attgtctccgcatgtccatgacggcgacagagagttgcagttgatggtggctgatgttattaccgcattcatcatttccgataagaccaataaacttctt  306300                                                                                                xxxxx                                                                                                <----                                                                                             <-------                                                                                           --------->ZAT14                                                                                           <---------ZAT14                                                                                          <---------REM1(1)                                                                                          <---------ANAC46                                                                                       <---------AtMYB61                                                                                       --------->ALFIN1                                                                                     <---------ANAC46                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxx>smallRNA(se3)                                                          <---------ARR14(2)        xxxxxxxxxxxxxxxxx                                                          <---------ARR11(1)        xxxxxxxxxxxxxxxx>smallRNA(si3)                                                          --------->ARR14(2)        xxxxxxxxxxxxxxxxx                                                          ------->TEIL              xxxxxxxxxxxxxxxxx                                                         <---------CCA1(2)          *TSS<---------ANAC46                                                       <---------ANAC58             xxxxxxxxxxxxxxxxx                                                       <---------ANAC58             xxxxxxxxxxxxxxxxx                                                       --------->ANAC55(2)          xxxxxxxxxxxxxxxxx                                                       <---------ANAC46             xxxxxxxxxxxxxxxxx           --------->MYB52(1)                 --------->TOE1(3)                     xxxxxxxxxxxxxxxxx       --------------->AGL15                  --------->TOE2(3)                     xxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------------AGL15                 ----------->GT1                        xxxxxxxxxxxxxxxxx      <-----------------AGL3                <---------TOE2(3)                       xxxxxxxxxxxxxxxx>smallRNA(le3) --------At4g35610                     --------->ZAT6  <---------ANAC55(1)          xxxxxxxxxxxxxxxxx ------->At4g35610                   --------->MYB52(1)<---------ANAC55(2)        --------->ALFIN1 xx -----At4g35610                   --------->YAB1     <-----------GT1--------->ARR11(3)xxxxxxxxxxxxxxx   ctgctctctctactaatggaatcagtttttgttttagaataacagtaacgttatattacgtatctctatagataatgccacaaggtgctgtggtgtagtg  306400                                               <---------ZAT2                                               <---------At4g35610                                               <------NtERF2                                         --------->LBD16                                         ------>ZmHOX2a(1)                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                       ======================RAV                         --------->ARR11(3)    --------->At4g35610                         <---------ARR11(3)   <---------ATERF1(1)              <---------REM1(2)        ----------->RAV1(2)        xxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->TOE1(2)    <---------ANAC55(2)--------->DAG2 <------ZmHOX2a(2) xxxxxxxxxxxxxxx>smallRNA(s2)   xxxxxxxxxxxxxxxx>smallRNA(s) -----MYB46(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --ANAC46  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxx>smallRNA(fl3)    xxxxxxxxxxxxxxx>smallRNA(le3) xxxx>smallRNA(se3)   xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxx>smallRNA(si3) xxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxx>smallRNA(le3) >smallRNA(se3)  --------->ANAC58     xxxxxxxxxxxxxxxx>smallRNA(s) xxxx>smallRNA(i2)    xxxxxxxxxxxxxxxx>smallRNA(i) xxx>smallRNA(se3)   ---------->DOF2 xxxxxxxxxxxxxxxx>smallRNA(s) x>smallRNA(le3) --------->ANAC55(1) <---------ARR14(2) >smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s) ----------->RAV1(1)        --------->YAB1 xx>smallRNA(se3)--------->ANAC46    xxxxxxxxxxxxxxxx>smallRNA(i)        --------->YAB1 xxx>smallRNA(le3)xxxxxxxxxxxxxxxxxx>smallRNA(si3)                      <---------AHL20(2)          - x>smallRNA(fl3) --------->ANAC58  xxxxxxxxxxxxxxxx>smallRNA(s)        <---------AHL20(2)          <- x>smallRNA(se3) --------->AtLEC2 xxxxxxxxxxxxxxxx>smallRNA(s)         --------->AHL20(2)      <----- xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(s)    <---------AHL20(2)   --------->HSFC1(2) x>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               --------->AHL20(2)   <---------HSFC1(2)   gttatcacgtttgccttacacgcaaaaggtctccagttcgatcctgggcagcaccaattgtgttttgcaattttttaataagaaaaatgcaaacttcctt  306500                                                                                   ------>MYB46(1)                                                                                   ------>MYB83                                                                                --------->DEAR3(2)                                                                              --------->MYB52(1)                                                                              <---------WRKY18(1)                                                                             ----------->HVH21                                               --------->ATHB12            ----------->RAV1(2)    <--       --------->AHL20(2)                      <--------ATHB1             ------>NtERF2           ---  <----------DOF2               --------->ATHB12 <---------WOX13(1)     --------->ATERF1(1) --------- --------->ID1                 <---------YAB1 --------->ICU4           <---------ATERF1(1) <---------TOE1(3) ----------GT1        <---------AHL20(2)      <---------YAB1          ----------->HVH21    <---------TOE2(3) -----DOF2            --------->AHL20(2)    --------->YAB1          --------->CCA1(2)<----------DOF2   ttttcttttttatatacagaccaaaaaattggtatgatttactcaagaatgattgttctatccaaacaagagacgacgcctgaccgactttgtaaggtta  306600                                                                                   <----------DOF2                                                                              --------->At4g35610                                                                              <---------At4g35610                                                                              <---------ZAT2                                                                             <-----------RAV1(1)                                                                           --------->ZAT2                                                                           --------->At4g35610                                                                           <---------At4g35610                                                                           <---------ZAT2                                                      ================================RAV                <---------ANAC46                      ----------->RAV1(2) <-----------RAV1(1)     ---                <---------ANAC58 <---------At4g35610 --------->LBD16    ----------->RAV1(2)      ---- <---------------AGL15           --------->LBD16     ------>NtERF2      <---------At4g35610   ------- --------------->AGL15         <---------LBD16     <---------LBD16      =================RAV <------- -------------AGL15        <----------DOF2     <---------GLK1(1)      <---------WRKY18(1)   --------- ------------>AGL15 <---------CCA1(2)    <----------DOF2             --------->WRKY12     --------->At4g35610 -->GT1         <---------ANAC58 --------->At4g35610--------->ANAC46 --------->WRKY38(1)  <---------At4g35610   ctactactagtagaagttgcctgtctcttcttttccgcagaagcttttgaactcccgcctgtctctatactttgacctgctgctgctttcttcgctgaac  306700                                  <---------MYB46(3)                                  <---------REM1(1)                               <-----------RAV1(1)                          --------->ANAC46   <---------GLK1(1)      --------->ANAC58 ------>At5g28300      <---------ZAT18 ------->GT1           --------->ZAT14 -->MYB52(1)       --------------->AtSPL8     <---------REM1(1) --SPL7           <----------DOF2 <-----------RAV1(1)      <<<<<<<<<TBF1 -->HVH21   --------->ICU4--------->ANAC58    <-----------RAV1(1)            <----------DOF2   ------   ggtagaaatcggtaatgcttctttgtacacccattgttgttgctcttggtgttgctgtttcttcttcagaaacattcttctttttcgactctctcagttt  306800  Previous    Next  AGI:  At1g01860.1    Description:  PFC1 (PALEFACE 1). similar to ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] (TAIR:AT5G66360.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO24395.1); contains InterPro domain Ribosomal RNA adenine methylase transferase; (InterPro:IPR001737) Range:  from: 304133    to: 306287    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g01870.1    Description:  pre-tRNA. tRNA-Val (anticodon: TAC) Range:  from: 306384    to: 306456    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g01880.1    Description:  DNA repair protein, putative. Identical to Flap endonuclease GEN-like 1 (GEN1) [Arabidopsis Thaliana] (GB:Q9LPD2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48900.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO24472.1); contains InterPro domain XPG N-terminal; (InterPro:IPR006085); contains InterPro domain XPG I; (InterPro:IPR006086); contains InterPro domain Helix-hairpin-helix motif, class 2; (InterPro:IPR008918); contains InterPro domain DNA repair protein (XPGC)/yeast Rad; (InterPro:IPR006084) Range:  from: 306558    to: 308991    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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