Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->AHL20(1)                      <---------YAB1                   <---------TOE2(3)                   <---------YAB1                  <---------AHL20(2)                  --------->AHL20(2)                                                              <--                  --------->YAB1                                                             <-------                <---------YAB1                  <---------HSFB2a(2)                         <--------      <---------ARR11(3)<---------AHL20(2)      <---------HSFC1(1)                         ------->TEIL --------->At4g35610 --------->AHL20(2)--------->DAG2 <---------ANAC46               <---------ARR14(2) ----->ATHB12<---------YAB1           ---------->DOF2<-------TEIL                    --------->ARR14(2) ->TEIL<---------CCA1(1)<---------AHL20(1)      --------->HSFB2a(2)             ----------->GT1   <--   gtttgctggatatttcttattaatattatattttgtgttgaaaagtgtttctagatgcgcatacaaattagttgagtttgagtagcaaatatgtatgctg  292900        --------->REM1(1)      ------>ZmHOX2a(1)            <----------TaMYB80   <-----------GT1       <---------YAB1                                                             < --------DOF2       <---------MYB46(3)                                                          ----- --At4g35610        --------->MYB52(2)                         --------->GLK1(1)          <---------ANAC58 ---RAV1(1)       <---------MYB52(1)                          ---------->DOF2             <---------ANAC58 -------DAG2 <-----------GT1   <-----------GT1       <------ZmHOX2a(2) ---------->DOF2    <---------ANAC46   cttttttcctacatttttcggtttgttatgttttcacatattcccttgggaatcgatccaagcggaaagcctaaaaagaagaatgcatcaattcgtgttg  293000                                                                                            <--------                                  <---------ALFIN1                                         <---------AHL20(2)                                 --------->ZAT14                                           --------->AHL20(2)                                 <---------ZAT14                                        <---------ICU4                                <---------ALFIN1                                       <---------YAB1   <---------ZAT18           --------->ANAC46                          ----------->GT1 --------->ICU4 -----------RAV1(1)       --------->PCF2                           ---------->DOF2   --------->YAB1 ---->ATHB12         <----------DOF2  --------->YAB1       <---------YAB1           ----------->GT1   atttgtgggcttaagcccaatagctttggaccctccacactgatagcattttcttagggctatcaatgctaaaggctaaaacgagactgataattaaata  293100                      --------->ANAC58                      --------->ANAC58                  <-----------HVH21                                                                --           --------->ANAC58                                                 ----------->GT1        <-     --------->AHL20(2)                                               ----------->HVH21       <------     --------->ICU4 <-----------GT1                        <---------AHL20(2)                 <------ -AHL20(2) --------->ANAC58     ----------->GT1            --------->AHL20(2)           <----------DOF2   agttgcattaattaagcaagtgtcacgcttcttcttgttaaaacgtttagtctgtgactaaataaatatagtatgacactgaaaaaactcctttcacttt  293200                -------->HAHB4                <---------ICU4                --------->YAB1               --------->ICU4    <---------AHL20(1)    --------->ARR11(3) ------->AHL20(2)     ------>ZmHOX2a(2)                          --------->AHL20(2) --------AHL20(2) <---------YAB1                              --------->YAB1 ----DOF2      <---------YAB1                                <---------YAB1    ---------->DOF2 ---DAG2     --------->YAB1    <----------DOF2     <------------CBF--------->AHL20(2) <---------ANAC46   ttttaatatatactataatgatgatccattctcctttgatgctaatttggaaatattggtcttatcaaaaaatataagaaatatagcggtgtctaatctt  293300        <---------ALFIN1      --------->ANAC58      --------->ANAC58      <---------ALFIN1   <---------ZAT14   --------->ZAT14   <---------ZAT18   --------->ZAT18                        *TSS                  <---------WRKY18(1) <-------MYC3                          <----------DOF2       <---------ANAC58  <----------DOF2 ------->MYC3                          <---------DAG2        <---------ANAC58  ------>ZmHOX2a(1) <-------MYC2             <---------AHL20(2)     --------->MYB52(1)    <-----------GT1 ------->MYC2    <-----------GT1    <-----------GT1 ------->GAMYB  <----------DOF2 <-----------GT1   ccatgtgcacacacttgtttatccctatttttttgtatatacttttttagttaacagcatgaggcttgacttttctctgtcctttcaacaattcaatggc  293400                                                                      <---------DAG2                                                                      <----------DOF2                                                                 --------->KAN4(2)                                                              >>>>>>>>>ARR2                                                             --------->ATHB12                                                            <---------YAB1                                                        <---------GLK1(2)       <-----------GT1                                                        --------->ARR11(3)  <----------DOF2                                                        <---------ARR14(2)---------->ID1                                                <----------DOF2 <---------MYB46(3)                                             --------->ARR11(3)--------------->AtSPL8         -------        <-------TEIL                         <---------ARR11(3)<---------WOX13(1)  ------>ZmHOX2a(1)   agacccaaggttcatgcttcttctctctctgtctaacctcggcttgaaatctttttcagattttgattgttcctttttctttttcctgtttgtctccaga  293500                                              --------->ANAC46                                              --------->ANAC58                     ---------->DOF2          --------->ANAC58        <-----------GT1        <---------ANAC58                     --------->MYB52(1)    --------->CCA1(2)     <---------MYB46(3)        <---------ANAC58       --------->STY1(2)                 <------------   <---------At4g35610--------->MYB52(1)--------->CCA1(2)<<<<<<<<<<<<<<<<<LFY    <---------At5g28300   <-------GAMYB    --------->MYB46(3) --------->ARR14(2)--------->MYB52(1)     <-----------GT1 -->LBD16         ----------->RAV1(1)<---------TOE2(3)<---------STY1(2)<-----------RAV1(1)--------->At4g35610   gttgcagttgttactggttccaacaaagggattgggtttgagatttgcaggcaactagctaacaatgggataactgtggttttaactgcgagagatgaaa  293600           --------->At4g35610           <---------At4g35610                                   <-----------GT1           --------->ZAT2                           --------->ANAC46                  ------->GAMYB     <---------ANAC58                               --------->ANAC58                -------->P-------     <---------ANAC58                               --------->ANAC58                ------>MYB46(1)   --------->ARR11(3)                  ----------------------->TaNAC69(2)           --------->ANAC46 ---------WRI1     ---------->DOF2    ----------->GT1         <----------DOF2       ------>MYB83   acaagggtcttgctgctgtccaaaagctcaagactgagaatggtttttctgatcaagccatctcctttcaccctcttgatgtctccaacccagacaccat  293700                                                                                         <------ZmHOX2a(2)                                                                                        <---------AGP1                                                                                        --------->AGP1                                                                                        --------->ARR11(3)                                                                               <---------YAB1                                                                              --------->TOE2(3)                                                                             --------->YAB1       <--                                                                          --------->YAB1<---------ARR14(2)                                                                       ==========================HOX2a_HOX2a                                                                       ------>ZmHOX2a(1)--------->ARR14(2)                       <-----------------AGL1                          =========================HOX2a_HOX2a                      --------->ARR14(2)                            ---------->ID1      <---------ARR11(3)                      <---------ARR14(2)                    <----------DOF2 <---------YAB1------>ZmHOX2a(2) -->AtMYB61 <----------DOF2                 --------->GLK1(2)    <----------DOF2 --------->WOX13(1)   cgcttctcttgctgcttttgtcaagacccgcttcggcaaactcgatattctggcaagtttctcttttcttttcctattatcatcaatctagatctactaa  293800  Previous    Next  AGI:  At1g01800.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G61220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39528.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 293342    to: 295040    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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