Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <---------AHL20(2)                                                                                  <---------AHL20(1)           --------->MYB46(3)                                                     --------->AHL20(1)      --------->YAB1                                                              --------->AHL20(2) ---------->GT1                                                                   <---------AHL20(2) ------->DAG2                             ---------->DOF2                   <-----------GT1 ------->DOF2                    ----------->GT1       --------->AtLEC2  <----------DOF2          --- --->RAV1(1)<---------ALFIN1    <---------TOE2(3)--------->ALFIN1     <-----------GT1     --------->TOE2(3)   aaaagttataagaaccacttgtttttttttttctaatgtaaaatcaaagaggtgttcattcaaatttggatgttacttttacaatttaatattcttaata  252500                                      ---------->DOF2               --------->TOE2(3)  -------->P            <-----------GT1     --------->MYB46(3)        <---------ARR11(3)    <-----------GT1        <-----------ARR10 --------->WOX13(1)  <----------ID1     <---------MYB46(3)                                   <---------YAB1  <----------DOF2 ------->DOF2 <---------YAB1 --------->AHL20(2)                     --------->ICU4    <----------DOF2   caaagaaacaaatcttaccatagttgttcaattaactaccaaaagtttgagttgtcttgaaatttttgtattgattttgaatagattactttctttttgg  252600                                               --------->AHL20(1)                                               --------->ARR11(3)                                               <---------AHL20(1)                                               <---------ARR11(3)                                              <---------AHL20(2)                                           <---------AHL20(2)                                          --------->AHL20(2)                                      --------->ICU4                              --------->YAB1                            <---------------AtSPL8                                <--------ATHB1                      <---------AHL20(2)  <---------AHL20(2)     <---------YAB1  <---------ATHB12                     --------->AHL20(2)<---------ICU4          --------->YAB1    <---------ATHB51                  --------->AHL20(2)  <---------AHL20(2)--------->TOE1(3)    ------------>CBF   <----            <---------ANAC55(2)       <---------ATHB51  --------->YAB1   --------->ANAC58       -----            --------->ANAC55(2)       --------->AHL20(2)--------->TOE2(3)--------->ANAC58<-------TEIL   aatttgaatagattacttaatgaattaatactggtactaaataattaaatattttcaaccataaatgataaatgcaagaaccaataatacgttcattttt  252700             --------->ZAT6                                           --------->WOX13(1)           --------->MYB52(1)                                       ------------>CBF    ----------->GT1                           ---------->DOF2       <---------ATHB12   ----------->GT1                    --------->HSFB2a(2)          ------>MYB46(1)  <---------ARR11(3)          <---------GLK1(2)                   --------->WOX13(1)        <--------  --------->ARR11(3)          <---------ARR14(2)                ------------>CBF          <---------- -----HSFB2a(2)               --------->ARR14(2)     <---------YAB1------>MYB83 <---------ZAT6 ---->HSFB2a(2)    <------------CBF   <---------HSFB2a(2)------------>CBF   <---------MYB52(1)    ---   ggaagatgttaaataacagtagattgtgttcagatttgttctataaacaaaagcgatgatacaatgaccaatcaatctgttagtgaaaaatttcaccaga  252800                                                                                                 ----                                                                                                <----          <-----------GT1                                                                  ------>ZmHOX2a(2)       <---------ICU4                                                                     <------ZmHOX2a(2)       <--------ATHB1                                         --------->ARR11(3)          --------->CCA1(2)       --------->ATHB51                                       <---------ARR11(3)         --------->ARR14(2)       <---------AHL20(2)                                    <---------CCA1(2)           <---------ARR11(3)       --------->AHL20(2)                                  --------->AHL20(2)            --------->ARR11(3)      --------->ICU4                                    <----------DOF2                  <---------ARR14(2)    --------->YAB1                                     <---------ANAC58                  --------->AGP1 -At4g35610       <----------DOF2                      <---------ANAC58                  <---------AGP1 -GT1 <---------YAB1       ---------->DOF2            ---------->ID1<-----------RAV1(1) <---------GLK1(1) -------->GT1 ------>ZmHOX2a(1)<---------GLK1(2) <----------DOF2 <----------DOF2        --------->GLK1(1)   cagaaataataatttcctctctttcttagtaaagagtctcatcgtcgaaaacttttggcttttaaatcttttgttgtcagtgtttgtaagagatctgaga  252900                             ----------->GT1                           <---------MYB52(1)                          <-------GAMYB                                 --------->HSFC1(2)                     <------MYB83  <---------CCA1(2)                    <---------HSFC1(2)          --------->YAB1 --------->MYB52(2)                            <-----------ARR10 ---------->DOF2     <---------MYB46(3)                              ---------->DOF2 ----->GLK1(2)       <------MYB46(1)                         ------->MYC3 -----GLK1(2)      <---------MYB52(1)                        <-------MYC3               ---------->DOF2   ttctaaagtatatcagaactcgttggtcagttagtatatatctgaaatgccagtcgaaaaacatgtggaagaaaagcttcgctcaaatagaaaagagaga  253000                                                                                --------->GLK1(2)                 <---------HSFB2a(2)                                           <---------GLK1(2)                 --------->HSFB2a(2)                                           --------->ARR11(3)          <---------MYB52(1)                                                   --------->ARR14(2)         ----------->GT1                                                <---------At4g35610     --------->ARR14(2)                                                 ----------->RAV1(2)     <---------ARR14(2)                       >>>>>>>>>TBF1       <-----------GT1       <---------MYB46(3)     <---------ARR11(3)              --------------->AGL15  --------->YAB1     <---------ARR14(2)     --------->ARR11(3)          <------ZmHOX2a(2)         <---------YAB1      <---------ARR11(3)    <---------GLK1(1)           <---------ARR11(3)         ----------->GT1   ----------->ARR10    --------->GLK1(1)           --------->ARR11(3)       <---------ICU4 --------->At4g35610    <-----   ggctggatatctggtattttcagaaggaagaagagatcaccacaagaagaagaagttgataatgaaaataactcatctgaagattctcgtttgatgggag  253100                                                          ----------->GT1                                                       ---------->DOF2                                                    --------->YAB1                                                   <---------ATHB12                                                 --------->WOX13(1)                              <---------YAB1  --------->ANAC46     --------->LBD16                <--                           <------ZmHOX2a(2)  --------->AtLEC2  --------->MYB52(1)           --------   --------->GLK1(2)      --------->ARR11(3)  --------->ANAC58 --------->ARR14(2)        >>>>>>>>>TBF1 -----ARF1                <---------ARR11(3)  --------->ANAC58 <---------ARR14(2)  <---------HSFB2a(2)   ccaagaatttgcatttgtttctctctgagatcatgagaaaactgaaacatgcaatcagaaaggagaaaccggacaagagattgttagggaagaagaaaag  253200                                                                                         <-----------                               <----------DOF2                                          ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                                               <------------                   ---------->DOF2                                                      <------------ --------->HSFB2a(2)   <---------ARR11(3)                          --------->GLK1(1) -------->HAHB4 <---------HSFB2a(2)   --------->ARR11(3)                   ---------->DOF2         --------->ICU4 --------DOF2    <---------MYB52(2)<---------HSFB2a(2)<---------ARR11(3)            <---------YAB1 -->DOF2        --------->At4g35610--------->HSFB2a(2)--------->ARR11(3)          <---------ICU4   ctttgagaagagtttgtcaactaaagatcatttctttctcgagcgcatgacttcaatatctcaaaagagatttcatcaagaacataatgatccaaacttg  253300                                                         ---------->ID1   <------NtERF2                                                    <---------ARR14(2)    --------->LBD16   --------->ANAC58             <------ZmHOX2a(1)   --------->ARR14(2)   <---------LBD16   --------->ANAC46         ---------->DOF2     --------->LBD16          --------->LBD16   --------->ANAC58       --------->ANAC58     --------->LBD16          <---------LBD16 --------->MYB46(3)       --------->ANAC46    <---------HSFB2a(2)     --------->ZAT2 ----AGL15           <---------GLK1(1)    <---------ANAC58         --------->At4g35610 -----AGL3    <-------TEIL<---------ANAC55(2) --------->HSFB2a(2)  <---------At4g35610        ------- -----AGL1 ----------->GT1--------->ANAC58<---------ANAC58    <----------DOF2    --------->GLK1(2)   gcaacaagcaaacaggttcaaagaaatcacgaaaggattgtatggcttcccgagtattcgtctccttttagcagcccgggaagaatatggaaacagaatt  253400  Previous    Next  AGI:  At1g01690.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK92867.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain RNASE H1 SMALL SUBUNIT (AYP1)-RELATED (PTHR21726:SF4) Range:  from: 249141    to: 252462    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g01695.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G00440.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G00440.3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G00440.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO39618.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain RNASE H1 SMALL SUBUNIT (AYP1)-RELATED (PTHR21726:SF4) Range:  from: 252947    to: 254495    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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