Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <---------ANAC55(2)                                                                        --------->LBD16    --------->ANAC46                                                                       <---------HSFB2a(2) --------->ANAC58                                                                       --------->HSFB2a(2) --------->ANAC55(2)                                                                      <---------ANAC58     --------->ANAC58                                                             <---------ICU4                --------->ANAC55(1)                                                             --------->ATHB12       <---------------AtSPL8     <---------ZAT6                                          --------->ATHB51       --------------->AtSPL8     ----------->GT1   --------->ZAT6                        -------->ATHB1        <---------ANAC46 -->HSFB2a(2)      ------>ZmHOX2a(1)                        <---------ATHB51      <---------AtMYB61 -->LBD16         --------->TOE2(3)                         --------->ICU4  <---------ARR11(3) --ANAC46         <---------ANAC55(2)                       <---------AHL20(2)----------------------- --LBD16          --------->TOE1(3)            --------->GLK1(2)      <---------ANAC58  <---------REM1(2) ->HSFB2a(2)--------->AHL20(2)                 <---------ARR14(2)     <---------LBD16 --------->ZAT14 --HSFB2a(2)<---------AHL20(1)         --------->GLK1(2)    <---------YAB1  --------->ARR11(3) -LBD16     <---------AHL20(2)      <---------TOE2(3) --------->ETT(1)<---------ANAC46<---------ZAT18   aatactagtgttaattaattccttaacacttggacattaagtttctgagaatattgtcggaaattattggtttcgggagatgttttggtgtacacgtata  248700                                <-----------RAV1(2)                           <---------AHL20(2)                               <---------ZAT14                          <----------DOF2             -                          --------->ZAT18                         <-----------GT1                  --                          --------->ZAT14                        <---------ARR11(3)    <---------ANAC58                 <---------TOE2(3)                               --------->ARR11(3)    <---------ANAC46           <---------YAB1 <---------ZAT14    <---------YAB1  ---------->DOF2 <---------AHL20(2)  ---- >TaNAC69(2)  <---------YAB1   --------->ZAT14       <---------YAB1     <---------DAG2 <---------ANAC58   catcaagtttgtttttataaatgttgacttcactgcaggttttagttctaatagtatgattttaaaagataccactttttttattttttgtgtgtttggc  248800                                        ---------->DOF2                                      <---------AHL20(2)           --------->MYB52(1)             --------->AHL20(2)   <---------CCA1(1)                <-----------GT1                <--         <---------AHL20(2)      --------->ARR11(3)         <------MYB46(1)                  <-------       --------->ANAC55(2)       <---------ARR11(3)         <------MYB83                    <-------- -------->YAB1                   <---------ARR14(2)  <---------------AGL15                <---------AHL20(2) ------->ICU4<---------AHL20(2)----------->ARR10    <-----------------AGL3               <---------AHL20(2) ----->WOX13(1)    ---------->DOF2<---------RVE1(1) <-----------------AGL2          ------->TEIL<----   aattagtatatgtaattaaaaaaaaggaatgtgaagatattaaaaagaaaacatactgtatttggttcttaacggtttgtgtgatgcattttttaatgtt  248900                                                   <---------ANAC58                                              <---------ICU4                                              --------->ATHB51                                              --------->ATHB12                                              -------->ATHB1                                             <---------YAB1                                             <---------AHL20(2)                                             --------->ICU4                                  <-------        ----------->GT1                      <---------ATHB51                                <------- ---------RAV1(1)                      --------->HSFB2a(2)                            --------->MYB52(1) ----RAV1(1)                           <---------HSFB2a(2)                         --------->At4g35610 -TOE2(3)                       <----------DOF2    <---------ANAC58                <---------At4g35610 -----ANAC46          <---------YAB1   --------->HSFC1(1)                      --------->ANAC46   gtgttgcattcagtataaatcgttttcattgtcactttcatctagaaattattgggtttgcattcagtatgggccatttatacacagctaatgggcttta  249000                                                                                <---------DAG2                                   --------->ZAT14                        <-----------GT1                                   <---------ZAT18                    <---------ICU4                               <---------ICU4                         --------->AHL20(2)                               --------->ATHB12                      <---------AHL20(2)                              <-------TEIL                           --------->AHL20(2)   ===========                       --------->LBD16                           --------->AHL20(2)       ------>ZmHOX2a(1)                      --------->ANAC58                          --------->YAB1  <----------DOF2                      --------->ANAC46                         --------->AHL20(2)   <---------ANAC58 ---DOF2              --------->ANAC58                       --------->YAB1  <---------ALFIN1  <----- --DAG2              <---------LBD16              --------->TOE2(3)--------->YAB1   <---------ANAC58   tgggcctctaaaatcgtcccttccccgctatattcattgcacaagagcaaaaacttaaaacaaaaataaaaataatttcccacttttcgttcctctcagt  249100                                                                                                    <                  <----------DOF2                                                                   -                 ------>ZmHOX2a(2)                                                                  <               --------->ARR14(2)                                                                   -               --------->ARR11(3)                                                                  <-               <---------ARR11(3)                                                                ----               <---------ARR14(2)                                                     <---------ANAC46               <---------AGP1                                                         ----------->GT1           <---------LBD16                                                        <---------YAB1 <---    <----------DOF2                                                            <-------TEIL     <---- =======================HOX2a_HOX2a                                        --------->DAG2     <------ ------HVH21  <---------CCA1(2)          *TSS --------->ZAT14             ---------->DOF2     -------   cagtcgctctatctctggatcttttcaaaattcaaaattcggtttcagttctctcactctctctctctctatagcataaagttcattatcgtgaatagct  249200    <---------ANAC46              <---------ANAC58    <---------ANAC58              <---------ANAC58    <---------ANAC58              <---------ANAC46 ---------ZAT2                ------>ZmHOX2a(2)                     ------>ZmHOX2a(2) -------->At4g35610          <------ZmHOX2a(2)                      ==============================HOX2a_HOX2a ---------At4g35610         <---------ARR11(3)                     <------ZmHOX2a(2) -------->ZAT2              --------->ARR11(3)                     --------->At4g35610            <-- ----------RAV1(1)          --------->ARR14(3)                     ===============================HOX2a_HOX2a ----->At4g35610            <---------ARR14(3)               --------->TOE1(2)                ------>ZmHOX2a(1) ------At4g35610            --------->AGP1              ---------->DOF2 --------->GLK1(1)  ------>ZmHOX2a(1) -------RAV1(1)             --------->ARR14(2)       <-----------GT1=================================HOX2a_HOX2a ---At4g35610               <---------ARR14(2)    --------->YAB1   ==================================HOX2a_HOX2a -->At4g35610             ----------->ARR10     ------->TEIL --------->TOE2(2)        <----------DOF2   gctgctgcgtcttcgtctactgggtagtgagatcttgggtgatgaagatgaatattaacaaagcctgcgatctgaaatctatttctgtctttcctcctaa  249300                                                                                                  ---                                  <----------DOF2                                                 <--                          <---------CCA1(2)                                                       ---                         ------->TEIL--------->YAB1                                               ---                         <---------ARR14(2)                                                       <--                         <-----------ARR10                                                    -------                         --------->ARR14(2)                                                   <------      <------NtERF2      <---------ARR11(1)                      --------->GLK1(1)            ------- <---------TOE1(3)      <---------CCA1(2)                --------->ZAT6                       <------ <---------TOE2(3)      <---------ARR14(1)              <---------ZAT14       <---------TOE1(3)  <--- -------AHL20(2)       --------->LBD16             <---------TOE2(3)          <---------TOE2(3)  <---   tttaaggtgccatctcgcttctctccgtatctctctctttcacaatttgatttgagattacactgcgatttccatcgtttagggtttttgttttgttccg  249400        ----------->HVH21                                                                        <--- ------>ARR14(2)                                                                              <------ -------ARR11(1)                                                                     <------ZmHOX2a(1) ------>GLK1(2)                                                                    --------->LBD16 ---->TEIL                                                                        --------->HSFB2a(2) -------ARR14(2)                                                                  <---------HSFB2a(2) ---------->AG                  ------>ZmHOX2a(2)                       <-----------GT1  --------->ARR14(2) -----------AGL2               --------->At4g35610                     <---------AHL20(2)<---------ARR14(2) ---------->AGL1             <---------ZAT14                     ------>MYB83     <---------LBD16<--- -----------AGL1             --------->ZAT14                     ------>MYB46(1)  <-----------RAV1(2) ------GLK1(2)         <-----------HVH21                ====================================HOX2a_HOX2a ------ARR14(1)       <---------ZAT6------->TEIL        ------>ZmHOX2a(2)<-----------GT1 --------->GLK1(2)   aatctggtttgtgactggagacgagtgtcagtgatctgtatgtggacattgtttttgatctattaccaactaatttatcgcttcccaggagaatccatta  249500                                                                     <---------At4g35610                                                         --------->ANAC46                                                         --------->ANAC58                                                    --------->MYB46(3)       ========================                                                  <---------ARR14(2) --------->At4g35610                                                  --------->ARR14(2) --------->ZAT2                                              --------->At4g35610    <---------ZAT2                                              <---------At4g35610    <---------HSFC1(2)   --------->ZAT14                    <-----------GT1        <------ZmHOX2a(2)         <---------HSFB2a(1)  <---------At4g35610                 <---------ICU4           <---------ARR11(3)         --------->HSFC1(2)   <---------ZAT14           --------->YAB1                 <---------ARR14(2)      <---------ZAT2    <-----------HVH21          <---------ZAT6                  --------->ARR11(3)      <---------At4g35610     --------->ZAT2        <---------At4g35610               --------->ARR14(2)      --------->ZAT2   ------->GAMYB ------TOE2(3)  <---------YAB1           --------->GLK1(1)        --------->At4g35610     --------->At4g35610 ---MYB52(1)    --------->ICU4           <---------GLK1(1)   --------->At4g35610  --------->MYB46(3) ------TOE1(3) <---------TOE2(3)       <------ZmHOX2a(1) --------->ANAC58    ------>ZmHOX2a(2)   ----   gggttttggctactgataatgtttactctttggaattagaaggagatcagcagaaccacaagcatctcagcagcttcgatctcaacagtcacagcagtcc  249600  Previous    Next  AGI:  At1g01690.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK92867.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain RNASE H1 SMALL SUBUNIT (AYP1)-RELATED (PTHR21726:SF4) Range:  from: 249141    to: 252462    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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