AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
------>ZmHOX2a(1) ----------->RAV1(2) ------>ZmHOX2a(1) ==================HOX2a_HOX2a <-----------GT1 <------ZmHOX2a(2) ----------->RAV1(1) <--- -------GT1 ===============HOX2a_HOX2a ---------->DOF2 ------>ZmHOX2a(2)
accggtttttcctcctggttcgatccaatgtagcatgagagaacttcttctcttgttacaaacgcaaagtctgcaacattatcgatctgcttctgatcag	26541900
<------NtERF2 ------>NtERF2 ------->GAMYB -------->P ------ALFIN1 ---------->DOF2 <-----------GT1
cacccgccgaaacatccacaatcacaacctcaacctgttattccaataaaacggctcacaaaaatatcaaccattcacaatcttccaattctccagaaaa	26542000
<-----------TGA1 ----------->GT1 <-----------RAV1(2) <-----------ARR10 ------>ZmHOX2a(1) ----------->GT1 <-----------HVH21
cttaaaattgagtcaaatccttcatatttcgtaaaattggtcaatagtgattcaggtgagtctttcttcgtcagagctaatcttaccttggaagacgagt	26542100
----------->HVH21 ------>ZmHOX2a(2) <-------GAMYB <------NtERF2 --------->ABI4(2) <- <---------ABI4(2) ------>ZmHOX2a(2) ------------>AtMYB77 <<<<<<<<<TAC1
ttttggagaatgcgccgatatttgatcgcactgatccagcaaggaatcgtagctcatcaagcttggtatcggcggttccgacacagaacactcgataagt	26542200
<---------ALFIN1 <------ZmHOX2a(2) ------>ZmHOX2a(1)------>NtERF2 <-------GAMYB <----------DOF2 ================HOX2a_HOX2a *TSS <-----------RAV1(1) ----------GT1 <------ZmHOX2a(2)----------->RAV1(1) --------->ALFIN1
ttcacctttcatattcgtctccacagatcaaaatcctccgatccaacactgccgtctgatttctatgcggtgttgtttgttggatttgaagcaaaaaaac	26542300
<---------TGA1a <-----------HVH21 =================MYC_MYB ==================MYC_MYB <-------GAMYB ======================MYC_MYB ------------>AtMYB77 <-----------RAV1(1) <------------CBF ----------->GT1 <-----------RAV1(2)<--------P <------------ATHB5 =========================RAV <--------ATHB1
gtagtagcaaatagtagtaagttgttaagtcagctgttcttattgtcggttggtcacgttcccaataattcgccgtgtaaatttgttttattgcaaaatt	26542400
<----------DOF2 ------->TEIL ---------->DOF2 ----------->GT1 <-----------GT1 <-----------GT1 <---
gcctaaatgtttttgttttgtgaaaaaacattcccagtggtttttgtttttaacgaaagtacctttaaattttgtttattacataatacaccctgtaatt	26542500
------>ZmHOX2a(1) --------GT1 ----------->GT1 ------->TEIL <-----------GT1
ttctgtattagaaaactgcccttgagttatgtttaattcccccagagtacagtttattacatatgtaccaaatacacatatcatataacattttcctagt	26542600
---------->DOF2 <----------DOF2 ------->GAMYB ------
ctcaacatgaaatctaaaaaatctacattgacagattactttcgtatcaaagaaacgactagagtaacagtcgttttgttcgtgcagctagcatgttgtg	26542700
------>NtERF2 ----->HVH21 <-----------HVH21 ----------->HVH21
acacatggtatgcaaatttcttaaacaatgtgtccataatgtctactccgaagtcagctacaagcattgattcgctgaccgctcttatacagttggcttc	26542800

AGI:	At5g66420.1
Description:	similar to tm-1^GCR26 protein [Solanum lycopersicum] (GB:BAF75725.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48327.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45848.1); contains InterPro domain Protein of unknown function UPF0261 (InterPro:IPR010647)
Range:	from: 26538900	to: 26542255	Orientation: Reverse
Links:	TAIR MIPS

AGI:	At5g66430.1
Description:	S-adenosyl-L-methionine:carboxyl methyltransferase family protein. similar to NAMT1 [Arabidopsis thaliana] (TAIR:AT5G04370.2); similar to NAMT1, S-adenosylmethionine-dependent methyltransferase [Arabidopsis thaliana] (TAIR:AT5G04370.1); similar to methyl transferase [Arabidopsis lyrata subsp. lyrata] (GB:AAP57211.1); contains InterPro domain SAM dependent carboxyl methyltransferase (InterPro:IPR005299)
Range:	from: 26542636	to: 26544025	Orientation: Reverse
Links:	TAIR MIPS

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