AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
--------->ALFIN1 ----------->HVH21 ===========================HOX2a_HOX2a <------ZmHOX2a(2) ============================HOX2a_HOX2a --------->AGP1 <---------ALFIN1 =================================HOX2a_HOX2a ==================================HOX2a_HOX2a <-------TEIL <---------AGP1 ------>ZmHOX2a(2) <---------ALFIN1 --------------->AtSPL3 ------>ZmHOX2a(2) ------>NtERF2 <----------DOF2 ------->TEIL <------ZmHOX2a(2) ------>ZmHOX2a(1)<----------DOF2
aaatcttctttatacacttgatacgtaccgagctagagctggatccagatccggagcggtgaagcattcctcccaagccaccaccactttccttgtggag	26536100
------>ZmHOX2a(1) ---- <---------ALFIN1 ---- ----------->ARR10 ------->TEIL -- ------>NtERF2 --------->PCF5 --------------->AtSPL3 <---------PCF2 ---------->DOF2 <-----------HVH21 <------NtERF2 ----- --------->ALFIN1 ------>NtERF2 <-----------HVH21 ------>NtERF2 <-----
ttgctcttggccgtggtgcctagctcctccgccagttccaaagccttcagtcccggtcccggttccgtatccttggccaccggttccgtacccttggcca	26536200
------->TEIL ------>ZmHOX2a(2) ----------->RAV1(1) ------->RAV1(2) ------>ZmHOX2a(1) ----->O2 ================================RAV ------>ZmHOX2a(1) --------->HVH21 ----------->RAV1(2) ----------->RAV1(2)<---------ALFIN1 ------>ZmHOX2a(1) ->NtERF2 ------>NtERF2 ------>NtERF2 <---------ALFIN1 <---------ALFIN1 -------- ----ALFIN1 <---------ALFIN1 <---------ALFIN1 <---------ALFIN1 ------>ZmHOX2a(1) --------
cctgatccgtacccttggccacctgttccgtatccttggccacctgtagctcctccaccaccaccagttccgtatcctcctcctcccatcggatttccgt	26536300
<-----------TGA1 <-----------------AGL1 <-----------RAV1(1) <-----------HVH21 ----------->HVH21 <-----------HVH21 --------------->AtSPL8 ------>ZmHOX2a(1) ------->AtSPL8 --------------->AtSPL3 ----------->RAV1(2) ------>NtERF2 ------->AtSPL3 ------>ZmHOX2a(2) ----------->HVH21 <--------P <
actcgtcatactgctgctggatcgggtttccgtactcgtcagtggcctgacctcctggacggttctggtaagacgccatgttcttcttgtcttaagcaaa	26536400
<-------TEIL *TSS ----------->GT1 <----------DOF2 ----------->ARR10 <------- ----------DOF2 <----------DOF2 <----------DOF2 ------>ZmHOX2a(2) <------------CBF
cactttgagctaagctagttaaaaaaactctttctttgtgatattagactttgatgagtttgatcgatgaagattcgttaacgcattgaagatagtttta	26536500
--------->ALFIN1 <-----------HVH21 <---------O2 --------->O2 <---------TGA1a --------->ALFIN1 --------->TGA1a <---------O2 ----------->TGA1 ----------->HVH21 ---------->DOF2 =================bZIP_DOF <------NtERF2 <---------------AGL15 ----------->RAV1(1) <-----------------AGL3 <------NtERF2 --------->ALFIN1 ------------>CBF <---------TGA1a <------NtERF2 ----TBP <------ZmHOX2a(2) ------->TEIL ===================bZIP_DOF <-----------RAV1(1)
tagtccggtttcggatatggatcaactattagtttaatgaatcaatatttggaaagtgacgcgtggcagcagcagaaaatgtcggcgtggtgtttcgcca	26536600
------->TEIL ---------->DOF2 <----------DOF2 <-------TEIL
tacgtgttcgtatttaaaatgaacttctgatatcactaaaggaatcggattgaatttatttttgagctttcatgtcgataccaagtacgtgttcatatca	26536700
<------NtERF2 <-----------RAV1(1) ------ ----------->GT1 <----------DOF2 ------>ZmHOX2a(1) ---------->DOF2 ------>ZmHOX2a(1) <---------ALFIN1 --------->ALFIN1 <----------DOF2 ---------->DOF2 ----------->HVH21 <-----------ARR10 --------------->AtSPL3 <------ZmHOX2a(1) ------>ZmHOX2a(1)
atcccatgacagggtgctggaaagcaaaatatctatccttttctttgtggcggtactaacattatcgtagctaacaggacacgtaatgctcctcctcgaa	26536800
--- ----- <-------GAMYB <---- ------->TEIL <------ <-------TEIL <-------TEIL ----------->GT1 ------- ---->DOF2 --------------->AtSPL3 =======
agcgatgcgtcgtgttaatgattttcatacacacgtacatcgtcgttgattgggtgaatttgaagaaacttggctgggtctgaaacatttgggctcatgt	26536900
---------->DOF2 ----------->GT1 <---------PCF2 ------>ALFIN1 <-------GAMYB ---->ALFIN1 ------>NtERF2 -------RAV1(1) <------NtERF2 ---TGA1a <-----------GT1 ------>ZmHOX2a(2) -->TGA1a <-----------GT1 ------->GAMYB ============= ================bZIP_DOF >>>>>>>>>MYB98 <----------DOF2 <----------DOF2 *TSS
gtgggccgtaaatcacttactaattagcccatggactaaaactaagccctaacaaaatttactcaacttttaccaaacgccgcgtttagatcgttggtgt	26537000

AGI:	At5g66400.1
Description:	RAB18 (RESPONSIVE TO ABA 18). Identical to Dehydrin Rab18 (RAB18) [Arabidopsis Thaliana] (GB:P30185); contains InterPro domain Dehydrin; (InterPro:IPR000167)
Range:	from: 26535523	to: 26536468	Orientation: Reverse
Links:	TAIR MIPS

AGI:	At5g66410.1
Description:	PLP3B (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG). similar to PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) [Arabidopsis thaliana] (TAIR:AT3G50960.1); similar to unknown [Populus trichocarpa] (GB:ABK94844.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335)
Range:	from: 26536996	to: 26538922	Orientation: Forward
Links:	TAIR MIPS

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