AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
---------->DOF2 ---------->DOF2 ----DOF2 ------>ZmHOX2a(1) <-------GAMYB ----------->GT1
agatgttgttttaattcccttgtgagtttggtttttttttcctaggggaaaacattatgagttcagttgtataaacaaaagaaggaaatttaaaaagaga	26256300
<-----------RAV1(1) ---------->DOF2 ----------->GT1 <-----------GT1 ------>ZmHOX2a(1) ---------->DOF2 <----------DOF2 <---
tgtttctcctaaattatatcaaagaacaaattgagatataaaataaaaggttatattatgttgctttgagggaaataaaccacttcgataattgaaatta	26256400
----------->HVH21 ---------->DOF2 <-------TEIL ----------->HVH21 <-------TEIL ----------->GT1 ------------AtSPL8 <------ZmHOX2a(1) ---------->DOF2 ---------->DOF2
gggttcgtatatgacagtgaccgatgttcgaaggatgcatcatcaaataaaaaagctgtattaatcaaaaagttataaaggctaatcataagcgtgatta	26256500
<------NtERF2 <-----------RAV1(1) <--------HAHB4 <-----------HVH21 ------>NtERF2 <-------TEIL ------>NtERF2 >>
taatgttaatgactgtgcctccaccaatcaacgcattcatcattactgcggcacttacgtcaacgaattaatcttttatcgataaaattccaagaggccc	26256600
<---------------AGL15 <---------------AtSPL3 --------------->AGL15 ---------->DOF2 <----------DOF2 <--------ATHB1 <-----------------AGL3 <------------ATHB5 <------ZmHOX2a(2) >>>>>>>MYB98 -------->ATHB1 --------->AGP1 <----------DOF2
taacttaggcttaatcaattattgggcctataaagaacggcaactgatgtagatccaaatgggctttatttagtaagcccaaactttatgttttctctta	26256700
<-------- ------>NtERF2 <-----------HVH21 ----------- ------>ZmHOX2a(1) ----------->HVH21 ------>ZmHOX2a(1) *TSS ----------->GT1 --------->ALFIN1 ------>ZmHOX2a(2)
tatcttcctgctctgttattagaaagaatctccgatttagatagaaacaacaatcctccggtggtcactcgctaatctccgtttgatctcgccgacactc	26256800
----------->HVH21 <-----------HVH21 ------>NtERF2 <---------O2 ----------->HVH21 --------->O2 <------NtERF2 ------>NtERF2 ----------->HVH21 <------NtERF2 <----------DOF2 ------>NtERF2 -ALFIN1 ------>ZmHOX2a(1) <-----------HVH21 ----------->GT1 >RAV1(1) <------ZmHOX2a(1) ---------->DOF2 <------NtERF2 ---------->DOF2 <----------TaMYB80
gagccttttaccgatgaaggatggagattccttaccaataagcacttcttccgtcgcggcgacgacggtgaccggaaagaaggaaaccggttattccgct	26256900
<-------GAMYB ---------->DOF2 <----------DOF2 <--------ZAP1 --
ctcttctcgaaaggccggtacaagttttgggccttagctgcgattctgttactcgctttctggtcaatgctcactggcacggtcaatctccgttggtctg	26257000
------>ZmHOX2a(2) <------ZmHOX2a(2) ------>ZmHOX2a(2) <-----------ARR10 ============================HOX2a_HOX2a =============================HOX2a_HOX2a <-----------GT1 <------ZmHOX2a(2) <---------AGP1 ------>ZmHOX2a(2) --------->GT1 <-----------GT1 <----------DOF2 <------ZmHOX2a(1) <------ZmHOX2a(2)
ccggtaacattaaccatttcaccgacgatctcgtctttcccatccacgaggatctcgatgttcttgtgagtcttcttcttcttcttcgcgatctgttttc	26257100
<---------TGA1a --------->TGA1a --------->ALFIN1 ---------->DOF2 <---------O2 ----------->GT1 <------ZmHOX2a(1) --------->O2 <-----------RAV1(1) <------ZmHOX2a(1) ==========================bZIP_DOF
tgatttctgtgaattacgtttgatttgtgttgtgttgatgaggttattaggaaatggaggagagggagaaagtggtgaagcacatgtgggatgtgtataa	26257200

AGI:	At5g65640.1
Description:	BHLH093 (BETA HLH PROTEIN 93); DNA binding / transcription factor. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G10570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38705.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598)
Range:	from: 26254281	to: 26256310	Orientation: Forward
Links:	TAIR MIPS

AGI:	At5g65650.1
Description:	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G36660.1); similar to unknown [Populus trichocarpa] (GB:ABK93535.1); contains InterPro domain Protein of unknown function DUF1195 (InterPro:IPR010608)
Range:	from: 26256728	to: 26258741	Orientation: Forward
Links:	TAIR MIPS

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