Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   ------>ZmHOX2a(2)                                                                --------->CCA1(2)                                                                <------ZmHOX2a(2)                                                    <----------DOF2                                            ------>NtERF2      --------->AGP1                                            --------->At4g35610<---------ARR11(3)               -----                                         ------>NtERF2         --------->ARR14(2)        --------->ANAC58                                         <---------At4g35610 ----------->ARR10           --------->ANAC58                                <----------DOF2---------->DOF2 <---------AGP1       <---------ZAT14 --------GT1                  <---------DAG2<---------At4g35610<---------ARR14(2)   --------->ZAT18 >AHL20(2) --------->ZAT14 <-----------GT1 --------->RAP2.6(2) --------->ARR11(3)   <---------ZAT18   aacaaatcaccagagaagtctcgacttattcactctttctctctgccgctaaagctttccgataagatctgaagaatgtaatcgagagcacaagacaata  25818100                                               >>>>>>>>>E2Fd                                     ----                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                            <---                             ----------->RAV1(1)                                                -----                            --------->ANAC46  ------>NtERF2                                     <----                          <---------ALFIN1    --------->LBD16                                   -----                          --------->AtMYB61  <<<<<<<<<<E2Fa                    ------->GAMYB    -----                         <---------MYB55(2)  --------->ANAC46         --------->ANAC46      ---------                         --------->MYB46(3) <---------LBD16           --------->O2       -------->P               --------->YAB1--------->DEAR3(1)>>>>>>>>>E2Fc          <---------O2   --------->ARR11(3)              <---------ATHB12--------->LBD16--------->ANAC58    --------->KAN4(2)   <---------ARR11(3)            --------->WOX13(1)--------->ZAT14--------->ANAC58  ------->TEIL ----------->RAV1(1) <---- ---->YAB1<-------TEIL --------->ANAC46 <xxxxxxxxxxxxxxxxsmallRNA(i)<-----------GT1  --------->GLK1(2)   gtaagtttcagattcaatcaaaaacaaaccaccgcagaaacattttcccgccaaaactggcgatgaatattcacgagacaacagcaaaatctaccaaaga  25818200                               --------->ARR11(3) <---------TOE2(3)          --------->YAB1 <---------TOE1(2)       <---------ICU4                                                            -- ----->CCA1(2)           --------->YAB1                                                           <-- ---ZmHOX2a(2)          <---------YAB1                                                    <---------HSFB2a(1) ---->AGP1   <---------At5g28300                                                          <---------HSFC1(2) -----ARR14(2)        --------->YAB1                                               <---------ARR14(2) ---->ARR14(2)        <---------ICU4                                               --------->ARR14(2) ---->ARR11(3)       --------->ICU4                      --------->ATHB12       >>>>>>>>>TBF1     === ->DOF2     <-----------GT1--------->At4g35610---------->DOF2                >>>>>>>>>TBF1--------->HSFB2a(1) -----ARR11(3)     --------->YAB1           --------->YAB1              <----------ID1    --------->HSFC1(2)   tccaaggttgaaatttaccgataatcatcatcagaacttgaagaaatcaaaagcgagaacgattgaagtagaaaacgaagaagaagaaccgaaatttccg  25818300                     --------->GLK1(2)                    <---------ARR14(2)            <---------MYB46(3)            <---------REM1(1)          <-------GAMYB      --------->STY1(1)        ----------->GT1      <---------STY1(1)       ----------->GT1                                                    <---     --------->TOE1(2)  <---------HSFB2a(2)                                                      ----     --------->TOE2(2) <---------LBD16                                      --------->ANAC58    ----- ------->YAB1       --------->ARR14(2)                                      --------->ANAC58    <---- ----ZmHOX2a(2)    <------ZmHOX2a(1)                                  ---------->DOF2         ------- =========================HOX2a_HOX2a          <-------TEIL         --------->TOE2(3)        <-------   atcaaaacctagggttgtagaggaatcgggaacgggaaaaaaacacagattcaatcgcgatagagctaaacctaaagctcgaaatcggaacttaaatcat  25818400                        <---------HSFB2a(2)                        <---------ANAC58         ---------       --------->TOE2(3)--------->HSFB2a(2)                        <---------ANAC58    --------->ANAC46       <---------MYB59 ------>ZmHOX2a(2)                          --------->ZAT2       --------->ANAC58 ------ICU4            ============================HOX2a_HOX2a    <---------HSFC1(2)   --------->ANAC58 ----->YAB1        <---------YAB1                                 --------->HSFC1(2)<---------REM1(2) ---->ICU4       --------->YAB1                                   <---------ZAT2--------->ARR11(3) -----YAB1     --------->GLK1(2)                                  --------->HSFB2a(1)<---------ALFIN1 -->YAB1      <---------GLK1(2)             ------>ZmHOX2a(1)    ------->TEIL   <-----------ARR10 --ATHB12 ---------->DOF2   --------->GLK1(2)                 --------->ANAC46  <---------ARR11(3)   aatcacatacctaaaagaatcgtgatcgagaagctaattcgtcttcctctggttcgatagcatcacgaagcttgctcagaaaaatctccacggccaaaga  25818500                                                                                                    <                                                                                                   --                                                                                                -----                                                --------->DEAR3(1)                             <-----                                              <---------At5g28300                             <------              --------->ICU4  --------->CCA1(2)--------->MYB46(3)                     ------->GAMYB<-              --------->AHL20(2)     --------->ICU4  <---------DEAR3(1)            --------->MYB52(1)              <---------AHL20(2)--------->ANAC58------->GAMYB             ----------->GT1     -------         ----------->GT1     <----------ID1  <-----------GT1              ------->GAMYB <---------ANAC46         <----------ID1     *TSS--------->ANAC58--------->ANAC46       --------->MYB52(1) <------NtERF2 ->DOF2 ----------->GT1  ---------->DOF2 <---------MYB46(3)           ----------->HVH21<---------LBD16   gagagagaagagggaaaaaattagtttcaaagagacgaaatgtttgttaaccgcctcggtgtatatatagggctaacggaaaatataacggcggaaagat  25818600                           <---------MYB46(3)                         <---------ANAC58                         <-------GAMYB                         <---------ANAC58                        <------MYB46(1) <---------MYB52(1)     <------MYB83 -------GAMYB           <---------MYB46(3)                                      <---------WRKY12 ------->ANAC55(2)     <---------AtMYB61                                ---------->DOF2 ---->GLK1(2)   <---------bZIP60(2)                               ------>MYB46(1) ----GLK1(2)    <---------ANAC58                            --------->WRKY38(1) <---------WRKY38(1) ---HSFB2a(1)   <---------ANAC58              ----------->HVH21   ------>MYB83 --------->WRKY18(1) -- --------ANAC55(2)     --------->MYB59      <----------DOF2 --------->WRKY12  <-----------HVH21  ---- -->HSFB2a(1)   <---------ANAC46    ------->TEIL          <----------DOF2<-----------GT1  --------->AHL20(2)   tccgttatccatttgatgacttggtttggttgtttctgtatgttgactttgacgctgtttctttgaccttccattaaaccggtcaaggcgaattaaacca  25818700                   <---------YAB1              --------->GLK1(1)             --------->ARR14(2)                                             <---------ANAC46           --------->LBD16                       <---------------AtSPL8     <---------ANAC58         <---------LBD16                         --------------->AtSPL8     <---------ANAC58  -------       <-----------GT1                   <---------MYB52(1)               <-----------GT1    <-------TEIL --------->GT1<---------GLK1(1)    <---------At4g35610      --------->TOE1(2)           ----------->RAV1(1) ------>DOF2 <---------ARR14(2)    --------->At4g35610      --------->TOE2(2)<---------------AtSPL8   aaagttatttaaccggaaatgctgattcgacccagtaagctctgtttttttttggtacaaaacataagaacacattttacttgtacattgcaacattcat  25818800               ---------->DOF2                    <<<<<<<<<<WRKY18   --------->YAB1             --------->ANAC58    --------->ANAC58  --------->ICU4              --------->ANAC46    --------->ANAC58                              -----  <---------ATHB12         <-------TEIL         <---------WRKY38(1)             --------->GLK1(1)   < -->YAB1  --------->AHL20(2)  --------->ANAC58 --------->WRKY18(1)  --------->AtLEC2       ----------   aacaatgatcaaataaacaaagacttgggttcaagccatcgactagatggtcaagtcaagaccagagaccatacaaaaacagagacccatgaaatgtaca  25818900                                                               <---------REM1(2)                   <- ----->DOF2                                                 <----------DOF2             <------------ ------ZmHOX2a(1)       ---------->DOF2                  ------->TEIL                   ------------- ->GT1      ---------->DOF2    >>>>>>>>>MYB2        <---------ANAC55(2)              <-----------GT1   aaggacccaagagtgaaagagaaacaaaaagaaaaccaaaaaactatacatattacatgaagctttacacagactctagccttgttgttaccacatagag  25819000  Previous    Next  AGI:  At5g64540.1    Description:  unknown protein Range:  from: 25815923    to: 25818528    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g64541.1    Description:  unknown protein Range:  from: 25818540    to: 25818677    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g64550.1    Description:  loricrin-related. similar to loricrin-related [Arabidopsis thaliana] (TAIR:AT5G09670.2); similar to loricrin-related [Arabidopsis thaliana] (TAIR:AT5G09670.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82910.1) Range:  from: 25818754    to: 25822206    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g64552.1    Description:  CPuORF22 (Conserved peptide upstream open reading frame 22) Range:  from: 25818754    to: 25822206    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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