AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
------->STF1 ----->HVH21 <------ZmHOX2a(1) --- ----->TGA1 ------->TEIL ------>NtERF2 <-----------TGA1 -----HVH21 ------>ZmHOX2a(2) <-----------GT1 <-----------HVH21
acgacgttgttacagctaggctcaacagtgatctcgttaacgaatcttttgactctccggcgaggaaacaagaaatcttcttcgtcttcgtcacttgatg	21636100
<------ZmHOX2a(2) <-----------RAV1(2) <-----------HVH21 <-----------TGA1 <-----------RAV1(1) <----------DOF2 ====================RAV -------->P ---------->DOF2 ---->TEIL <------ZmHOX2a(1) <-----------GT1 -------->P <----------DOF2
aatctgttgcgtcaggatcagtataacaaatactaacctttttcaatgacttaccaccggaaagtttttccgatgactttttggtgtatttagtcattga	21636200
------->TEIL --------------->AtSPL8 <----------DOF2 -
agtcttgtgctctgtgtacttcaatggtcggaaatcaatatattcgtccattactgtttcttttatggactctctctatattcgcatcaaaatgaagaat	21636300
---------->DOF2 ---------->DOF2 --------->DOF2 ---------->DOF2 <-------GAMYB ----------->GT1
ataaaaggaagaaaagcttgcgaatcaaggaaagtttctgggtttgttgagagagatttcgagagaatcaagaagaaaataaaacaaagtttgaagagat	21636400
----------->GT1 <-----------GT1 <-----------GT1 ---------->DOF2 ----------->GT1 ----------->GT1 *TSS --
ttatcacgagattttttggtaacaagaacaaaagatttttttttggtgggtgagagagaaaaacgtgttatgaaacagtgattttttttagcgattcgca	21636500
------>ZmHOX2a(2) <------ZmHOX2a(2) <-----------ARR10 -------- <------ZmHOX2a(1) ---------->DOF2 ------->ALFIN1 <-----------TBP <--------HAHB4 <-----------GT1
agtggagaccttctctagctcactcttgaaatgctaatttataggatctcttcggggttttagccataattattttattcatttttacaaaagtaaacaa	21636600
<-----------HVH21 ------>ZmHOX2a(1) ---->CBF <----------DOF2 <----------DOF2 <--------
taaattcgaaaactatataatatataatatttaatatcatttgatttctttccttgtcgaagctgtttctttccgctcctccatcagtggcatttttccg	21636700
<--- ------ ------- -------- <------- <------- >>>>>>>> <-------TEIL -------- <------NtERF2 >>>>>>>> ------>NtERF2 >>>>>>>> <------NtERF2 ----------->HVH21 <-----------GT1 ----------->ARR10 ----------->HVH21 ----------->GT1 ---GT1 <--------P ----------->GT1 ------>NtERF2 <---------AtLEC2
taattaactacaaaactccaagggtagtttcgggtataagagagttgtttaaaaatacgggacgccgcattcatgagcgcaagtcgcatggtgacacgtg	21636800
---NtERF2 --->ALFIN1 ----------->HVH21 ->ABF1 <-----------HVH21 ->O2 --------->TGA1a --O2 <---------O2 --TGA1a <---------TGA1a >>AtMYC2 ------->TEIL <------NtERF2 --------->O2 ->TGA1a ------>ZmHOX2a(1) --------->ALFIN1 ----------->HVH21 >>HY5 ------>ZmHOX2a(1) ---------->CDC5 <-----------HVH21 -- >>ABI5 ---------->ID1 <-----------HVH21 <-------TEIL <--
gcgatattagatatttggctccttcctgtatgtgctgagtcagcgcgtggcttctagtctcgaatttcgcgattcatgtcacgtgacccccaagataccc	21636900
<----------DOF2 ----------------->AG <------- ------->PCF5 <-----------GT1 <--------- ---------HVH21 --------------->AtSPL8 <-----------GT1 <----------
ggtcccggtttttttaaatttttttttacctttttagtttatttgatactaataataaaaacaaatttacttactacttctcaacaaattttttatcact	21637000

AGI:	At5g53290.1
Description:	CRF3 (CYTOKININ RESPONSE FACTOR 3); DNA binding / transcription factor. Identical to Ethylene-responsive transcription factor CYTOKININ RESPONSE FACTOR 3 (CRF3) [Arabidopsis Thaliana] (GB:Q9FK12); similar to CRF4 (CYTOKININ RESPONSE FACTOR 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G27950.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74147.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471)
Range:	from: 21635039	to: 21636493	Orientation: Reverse
Links:	TAIR MIPS

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