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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
YAB1
<---------
ICU4
--------->
YAB1
--------->
ICU4
<---------
ANAC46
<----------
DOF2
--------->
YAB1
<---------
ANAC58
--------->
WRKY38(1)
<---------
ATHB12
<----------
DOF2
<---------
ANAC58
--------->
WRKY12
<---------
ATHB51
------>
ZmHOX2a(1)
-
ggtcatagtcatacactcttacttgtttagttgtttggaaagagttgacttttgtaatcccttcaataataatcatctatctcctaattctcttttcaac
21545800
-------->
HAHB4
--------->
ATHB12
<--------
ATHB1
--------->
ICU4
<---------
YAB1
<---------
ICU4
--------->
YAB1
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
--------->
AHL20(2)
--------->
WOX13(1)
--------->
ARR11(3)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
YAB1
----------->
GT1
--------->
AHL20(1)
--------->
AHL20(2)
--------->
YAB1
--------->
LBD16
--
<---------
ARR11(3)
--------->
YAB1
<---------
ARR11(3)
--------->
At4g35610
<-
-------->
YAB1
<---------
ATHB51
--------->
AHL20(2)
<---------
ICU4
---------->
CDC5
--------->
AHL20(2)
aaaaatatttatataaataatgattcaaataatcaaataaataaacaaaatcataacaataatatagcacagcgggataaacaattaatcaacttagttt
21545900
--------->
AHL20(2)
<---------
AHL20(2)
<<<<<<<
ZML2
<----------
DOF2
--------->
ICU4
<---------
HSFC1(1)
<---------
AHL20(2)
--------->
HSFC1(1)
----
--------->
ANAC55(2)
--------->
HSFB2a(2)
<---------
YAB1
--------->
WOX13(1)
------------->
AGL15
<---------
HSFB2a(2)
--------->
YAB1
<---------
YAB1
<---------
ATHB12
--------------
AGL15
<----------
DOF2
<---------
DAG2
--------->
YAB1
<---------
YAB1
tgcattttaagtaattttttggataattctttctagaactcaattctcacttttataattcgattttctcttataatcccaaaacttatcattcaagtga
21546000
--------->
KAN4(2)
<---------
HSFB2a(1)
<---------
KAN4(1)
--------->
KAN4(1)
--------->
HSFB2a(1)
<---------
HSFC1(2)
<-----------
TBP
--------->
HSFC1(2)
--------->
AHL20(2)
--
<----------
DOF2
--------->
ANAC58
--
<---------
ARR11(3)
--------->
ANAC58
<-
--------->
ARR11(3)
--------->
ANAC46
--
--------->
CCA1(2)
<-----------
TBP
<---------
KAN4(2)
--
------>
ZmHOX2a(1)
<---------
ARR11(3)
<-----------
GT1
<---------
MYB52(2)
--
<---------
YAB1
------>
ZmHOX2a(1)
--------->
ARR11(3)
<-----------
GT1
<-----------
HVH21
<--
--->
TEIL
<-----------
GT1
<----------
DOF2
--------->
ANAC46
<----------
DOF2
------->
TEIL
<------
atcttatttttgtgattttcctccttctcttcttttacagagatatactcgaaatcttttttacccttttatataggtcacgaacattctatccatcttt
21546100
--------->
ANAC55(2)
<---------
ANAC55(2)
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
<---------
ICU4
--------->
YAB1
--------->
ATHB12
<---------
YAB1
--------->
ICU4
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ANAC58
--------->
YAB1
--------->
ANAC58
--------->
AHL20(2)
--------->
ANAC46
<---------
AHL20(2)
--------->
CCA1(2)
<---------
AHL20(2)
<---------
AHL20(2)
------->
ANAC55(2)
<---------
AHL20(1)
--------->
AHL20(2)
------>
MYB83
------->
ANAC58
--------->
AHL20(2)
<---------
YAB1
<---------
ANAC55(1)
------------>
CBF
--------
ANAC55(2)
--------->
AHL20(1)
<---------
AHL20(2)
------>
MYB46(1)
------->
ANAC46
--------->
AHL20(1)
--------->
AHL20(1)
--------->
WOX13(1)
------->
ANAC55(1)
<---------
AHL20(1)
--------->
AHL20(2)
<----------
DOF2
------
------->
ANAC58
<---------
AHL20(2)
<---------
AHL20(1)
<-------
TEIL
--------->
AtMYB61
-------
TOE2(3)
--------->
At5g28300
--------->
YAB1
-------->
HAHB4
------------>
CBF
-----
----
DOF2
<-------
TEIL
----------->
GT1
--------->
AHL20(2)
--------------->
AtSPL3
--------->
YAB1
tacgtaatagatacacacacaaaaatacagtaaaatattttaaaacgaataatataattaaaatgattacgtacactttgggaccaatccaattacaaaa
21546200
--------->
AHL20(2)
------>
MYB46(1)
------>
MYB83
------>
MYB83
<-----------
TGA1
------>
MYB46(1)
<-----------
HVH21
--------->
MYB46(3)
<---------
YAB1
<---------
bZIP60(1)
<---------
MYB46(2)
--------->
ARR11(3)
--------->
bZIP60(1)
<---------
MYB111(1)
<---------
ARR11(3)
<---------
ANAC58
--------->
ANAC58
--------->
AHL20(2)
<---------
ANAC58
--------->
ANAC46
<---------
AHL20(2)
---->
DOF2
--------->
ANAC58
--------->
AHL20(2)
---->
DAG2
<----------
DOF2
--------->
AtMYB61
<-----------
GT1
<-----------
GT1
-
agggtttcgtcactgctttagtttccaacaccaaaccaaacaaaaaa
atggatttaacaaaattaatatcattctctctcttgtttctatctcttctaat
21546300
------>
NtERF2
--------->
bZIP60(1)
<---------
RAP2.3(3)
<---------
RAP2.6(2)
<---------
bZIP60(1)
--------->
RAP2.6(3)
--------->
MYB52(1)
------>
NtERF2
<------
NtERF2
--------->
DEAR3(1)
------>
NtERF2
----
------>
NtERF2
<---------
MYB46(3)
-----
--------->
DEAR3(1)
<-----------
RAV1(1)
-----
------>
NtERF2
--------->
MYB52(1)
--------->
REM1(2)
------
--------->
DEAR3(1)
<---------
MYB52(1)
--------->
MYB52(2)
--------->
LBD16
------>
NtERF2
<-----------
HVH21
<---------
MYB52(1)
<------
ZmHOX2a(2)
<---------
ANAC46
--------->
DEAR3(1)
<---------
ALFIN1
---------->
DOF2
----------->
HVH21
<---------
ANAC58
--------->
SPL7
<---------
ALFIN1
--------->
AtLEC2
---------->
ID1
<---------
ATHB12
<---------
ANAC58
----->
NtERF2
--------->
AtMYB61
<---------
MYB52(2)
<-----------
HVH21
<---------
MYB52(1)
-------
cccgacgacgacgacgaccacttccaccgttacatgcactaacgccgtttgtcgccgtgacggcccgatcatccgttttccattccgtctaaaacaccaa
21546400
--------->
TOE1(3)
--------->
AtMYB61
<---------
MYB52(1)
--------->
TOE2(3)
--------->
At5g28300
<---------
LBD16
--------->
YAB1
--------->
LBD16
--------->
ANAC58
--------->
ANAC46
-------->
P
<---------
HSFB2a(2)
<---------
YAB1
---------->
DOF2
<-----------
GT1
--------->
MYB46(3)
--------->
HSFB2a(2)
----->
MYB46(3)
<----------
ID1
--------->
TOE1(2)
----------->
HVH21
<---------
LBD16
->
MYB46(1)
--------->
ANAC58
--------->
TOE2(2)
--------->
At5g28300
<---------
MYB52(1)
->
MYB83
<-------
GAMYB
<---------
ANAC58
<---------
MYB52(1)
<---------
DOF5.7(2)
----->
RAV1(1)
<---------
ARR14(2)
<---------
ANAC58
<---------
DEAR3(2)
<---------
At5g28300
--
-->
AtMYB61
<---------
MYB46(3)
--------->
MYB52(1)
--------->
LBD16
--------->
DOF5.7(2)
<----
caatctcattcttgtggttacgacaaaggcttcgacttaacgtgcgatattaacgccggtaacagaacaaccataacgttaccgttttccggtaacttca
21546500
<---------
At4g35610
--------->
At4g35610
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR11(3)
--------->
ARR11(3)
<-----------
ARR10
--------->
ZAT2
<---------
AGP1
<---------
ZAT2
--------->
ARR14(2)
--------->
At4g35610
--------->
MYB52(1)
------->
TEIL
<--
<---------
At4g35610
--------->
MYB46(3)
<---------
ARR14(2)
<----
------->
TEIL
------->
GAMYB
------>
ZmHOX2a(1)
<-----
<---------
ANAC55(2)
<---------
MYB52(2)
===============
HOX2a_HOX2a
------>
NtERF2
--------->
ANAC46
--------->
MYB46(3)
================
HOX2a_HOX2a
<-------
--------->
ANAC55(2)
<---------
WRKY12
--------->
TOE2(3)
--------
<------
ZmHOX2a(2)
--------->
CCA1(2)
--------->
ANAC46
--------->
MYB52(1)
--------->
TOE2(3)
------->
LBD16
--------->
ANAC58
<------
ZmHOX2a(2)
------->
GAMYB
<---------
ARR14(1)
--------
-----
At5g28300
--------->
ANAC58
================================
HOX2a_HOX2a
--------->
TOE1(3)
ccgtggaagagatcgattacgcagctcaagagatttggatcaacgacccaaacaactgtcttcctcaacggatcttacagctaaacctcaactcgacgcc
21546600
<---------
ANAC58
<---------
ANAC46
<---------
ANAC55(2)
--------->
At4g35610
<---------
ANAC58
<-----------------
AGL1
--------->
ANAC55(2)
<---------
ANAC46
<---------
DOF5.7(2)
<---------
GLK1(1)
<---------
ANAC58
<---------
ANAC58
--------->
ZAT14
<-----------
ARR10
<---------
MYB52(1)
<---------
ANAC58
-------
MYB52(1)
--------->
At4g35610
<---------
ARR14(2)
<---------
DOF5.7(2)
-----
ANAC46
<---------
At4g35610
<---------
ARR11(3)
--------->
DOF5.7(2)
-
NtERF2
<-----------
HVH21
------>
ZmHOX2a(1)
<-------
GAMYB
<---------
ANAC55(1)
--
DEAR3(1)
<---------
ANAC58
------->
GAMYB
--------->
ARR14(2)
--------->
ARR14(2)
-------
->
ANAC46
<---------
ANAC58
<-----------
GT1
--------->
ARR11(3)
<---------
ARR14(2)
<-------
->
DEAR3(1)
<-------
TEIL
<----------
DOF2
<---------
ZAT14
<---------
MYB46(3)
<---------
ANAC58
gtttagtggcgtttacatgcgtcagttcacgttctttaactgtcctacttcagagtatctccgttttaggccgttgaatccgataacgtgtttgagtggt
21546700
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AGI:
At5g53110.1
Description:
similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G46495.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79324.1)
Range:
from: 21546248
to: 21546970
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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