Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
<-----------
GT1
<---------
YAB1
--------->
AHL20(2)
---------->
DOF2
<---------
AHL20(2)
<------
ZmHOX2a(1)
------->
TEIL
-
--------->
AHL20(2)
<---------
TOE1(3)
<---------
AHL20(2)
-
--------->
YAB1
<---------
TOE2(3)
--------->
AHL20(1)
<-
<---------
AHL20(2)
--------->
MYB52(1)
--------->
AHL20(2)
--------
----------->
GT1
--------->
ANAC46
------->
TEIL
------------------------>
ANAC81
aaaaatgtaattaaaattactcttagcaaataccatgtctatacaaaactaaggatgtatgaacatgaaataaaatgaatcaaactaaaagaaaattgtt
17789800
<---------
AHL20(2)
<---------
ATHB51
--------->
AHL20(2)
----------->
GT1
<---------
AHL20(1)
--------->
AHL20(1)
-----
<---------
AHL20(2)
--------->
DAG2
------
-------->
AHL20(2)
----------------->
AGL1
<---------
AHL20(2)
<-----
-------->
YAB1
<---------
ANAC58
----------->
GT1
<-----
--------
YAB1
--------->
YAB1
<---------
ANAC58
<---------
ATHB12
<-----------
GT1
------
--->
GT1
--------->
ICU4
--------->
YAB1
---------->
DOF2
----------->
GT1
-------
tattatattgaaataattcatagtgaaactgcaaacatagggtgcctataaagtaatcaagggatgttaaattttttctatctctgcattttgaaatttt
17789900
------>
NtERF2
<---------
At4g35610
--------->
ANAC46
<---------
ZAT2
------->
GAMYB
--------->
ZAT2
--------->
DREB2C(2)
--------->
At4g35610
--------->
RAP2.6(2)
>>>>>>>>>>
GT-3b
<-----------
RAV1(1)
--------->
DEAR3(1)
<---------
TOE2(3)
---->
ATHB12
--------->
MYB46(3)
--------->
DAG2
--->
AHL20(1)
<---------
YAB1
--------------->
AGL15
----
YAB1
<---------
At4g35610
<---------
ALFIN1
<----------
DOF2
---------->
DOF2
----
----
AHL20(2)
<---------
At4g35610
<---------
ALFIN1
--------->
YAB1
----------->
GT1
-----
--->
AHL20(2)
--------->
At4g35610
--------->
DEAR3(1)
--------->
AHL20(2)
---------->
DOF2
<------
-->
AHL20(2)
<----------
DOF2
<-----------
GT1
<----------
DOF2
<---------------
AGL15
<--------
attggctctgctgctatcactttcagcttatgattttccaccgccatccactttgctcttttaaaataatctcataaaggaaaagaaaaatacaattaac
17790000
--------->
AHL20(2)
<---------
AHL20(2)
----------->
TBP
--->
GAMYB
----------->
RAV1(1)
<---------
ALFIN1
---->
MYB46(3)
<------
NtERF2
--------->
ANAC58
-----
GT1
<---------
ICU4
>>>>>>>>>
MYB98
--------->
ANAC58
-
MYB52(2)
--------->
YAB1
<-----------
GT1
<---------
ALFIN1
<------
ZmHOX2a(1)
cacatattttaatcaaaatggctgcaacagtttaacatatcaaggtgctaatatacccacacacacacacttatatataggagctaatatagagtggtat
17790100
--------->
ARR11(3)
<---------
ARR11(3)
<---------
CCA1(2)
<---------
ARR11(3)
--------->
AHL20(1)
<-----------
TBP
<---------
AHL20(1)
<-----------
GT1
--------->
ANAC58
------------>
CBF
---------->
ID1
<---------
GLK1(1)
--------->
ANAC58
--------->
ANAC58
---------->
ID1
--------->
YAB1
--------->
GLK1(1)
---------->
DOF2
--------->
ANAC58
<----------
DOF2
*
TSS
<---------
ARR14(2)
<----------
ID1
--------->
ALFIN1
<----------
DOF2
<-----------
GT1
--------->
ARR14(2)
aggttaagacaaaagccatatataagtggagaacccaatatatctttgtctttgttgttttttcctt
ctcgttcatagttaacttgcagatttcttagta
17790200
<-----------
GT1
--------->
AHL20(2)
<---------
AHL20(2)
------>
ZmHOX2a(1)
<----------
DOF2
---------->
ID1
------>
MYB83
<-----------
GT1
--------->
ZAT14
------>
MYB46(1)
<----------
DOF2
<---------
DAG2
<---------
ZAT14
<---------
MYB59
tttctaatctttttcttatattaaccttttgtctccttctctctctctctctctctgaactatacaaaaacctacttttaatttctcttccaagaagtca
17790300
<------
<--------
--------->
YAB1
<------
ZmHOX2a(2)
--------->
ARR14(2)
=============
<-----------
RAV1(2)
--------->
LBD16
<---------
ARR11(3)
===========================
RAV
<---------
LBD16
--------->
ARR11(3)
<------
ZmHOX2a(2)
-------->
P
<---------
YAB1
--------->
ARR14(2)
--------->
ARR14(2)
--------->
MYB46(3)
----
<---------
ARR14(2)
<---------
ARR14(2)
<---------
At4g35610
--------->
ICU4
----------->
HVH21
--------->
ALFIN1
----------->
RAV1(1)
=============
agaacccagaagaagac
atgacaagtgaagttcttcaaacaatctcaagtggatcaggttttgctcagccacagagctcatcaaccctggatcatgatga
17790400
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ICU4
--------->
AHL20(2)
<---------
ANAC58
--------->
ARR14(2)
<---------
ANAC58
<---------
ARR14(2)
--------->
STY1(2)
<---------
GLK1(1)
<---------
STY1(2)
<---------
TOE2(3)
--------->
GLK1(1)
--------->
ZAT2
--------
---
YAB1
------>
ZmHOX2a(1)
--------->
LBD16
--------->
ATHB51
--------->
At4g35610
-
ICU4
--------->
WOX13(1)
---------->
DOF2
--------->
LBD16
<---------
YAB1
<---------
At4g35610
----
=====================
HOX2a_HOX2a
<---------
LBD16
--------->
ICU4
<---------
ZAT2
<--------
--->
TEIL
------>
ZmHOX2a(1)
--------->
GLK1(1)
------>
ZmHOX2a(1)
<---------
AHL20(2)
<---------
ICU4
==================
HOX2a_HOX2a
<---------
GLK1(1)
--------->
LBD16
--------->
AHL20(2)
--------->
YAB1
atctctcatcaatcctcctcttgttaagaaaaagagaaatctccctggaaatcctg
gtaattatttatattaaatctcagctagcttgatcatcacctaa
17790500
--------->
TOE2(3)
<---------
MYB59
<--------
P
------>
ZmHOX2a(2)
<-------
GAMYB
--------->
ARR11(3)
<---------
ANAC58
<---------
AGP1
--------->
AHL20(1)
<---------
ARR14(2)
--------->
AHL20(2)
<---------
ARR11(3)
<---------
AHL20(2)
--------->
ARR14(2)
<----------
DOF2
--------->
AHL20(2)
<---------
CCA1(2)
--------->
ARR11(3)
<---------
AHL20(2)
<XXXXXXXXXXXXXXXXXXXXX
MIR850
--------->
TOE2(3)
<---------
AHL20(2)
<---------
AHL20(1)
<---------
HSFB2a(2)
->
TOE2(3)
<---------
ARR11(3)
--------->
AHL20(2)
<---------
MYB46(3)
<---------
WRKY18(1)
------>
DOF2
<-----------
ARR10
------>
NtERF2
<---------
ANAC58
--------->
HSFB2a(2)
---------->
DOF2
-
ANAC55(2)
<---------
CCA1(2)
<-----------
GT1
<---------
AHL20(2)
<---------
LBD16
--------->
YAB1
aaagaaaaccctagtatcttttctatttttttgccccctataaattaattttcttgggttgttttgttctggatcttgacctaaatcaaaagtagtattt
17790600
<---------
YAB1
<------
ZmHOX2a(2)
----------->
GT1
--------->
AHL20(2)
<----
<---------
ZAT14
<---------
TOE2(3)
<---------
AHL20(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
AHL20(2)
----------->
GT1
------>
ZmHOX2a(2)
<------
NtERF2
<---------
ARR11(3)
--------->
AHL20(2)
<----------
DOF2
<----------
DOF2
--------->
ARR11(3)
ggctgcatgagttatagatcactggctcatgcttaattaatgtgaaaatactaggccttttagtaaattaaaacttttatttgatctatagagttcttct
17790700
Previous
Next
AGI:
At5g44160.1
Description:
NUC (NUTCRACKER); nucleic acid binding / transcription factor/ zinc ion binding. similar to MGP (MAGPIE), nucleic acid binding / protein binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G03840.1); similar to Os01g0242200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042553.1); similar to hypothetical protein OsJ_001036 [Oryza sativa (japonica cultivar-group)] (GB:EAZ11211.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)
Range:
from: 17790168
to: 17792913
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version