AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
             <-----------GT1
         <---------YAB1
        --------->AHL20(2)                                                         ---------->DOF2
        <---------AHL20(2)                       <------ZmHOX2a(1)        ------->TEIL             -
       --------->AHL20(2)                      <---------TOE1(3)   <---------AHL20(2)              -
       --------->YAB1                          <---------TOE2(3)   --------->AHL20(1)             <-
       <---------AHL20(2)                     --------->MYB52(1)   --------->AHL20(2)       --------
 ----------->GT1                       --------->ANAC46   ------->TEIL------------------------>ANAC81
 
aaaaatgtaattaaaattactcttagcaaataccatgtctatacaaaactaaggatgtatgaacatgaaataaaatgaatcaaactaaaagaaaattgtt  17789800
         <---------AHL20(2)
         <---------ATHB51
         --------->AHL20(2)
    ----------->GT1
<---------AHL20(1)
--------->AHL20(1)                                                                             -----
<---------AHL20(2)                            --------->DAG2                                  ------
-------->AHL20(2)                       ----------------->AGL1  <---------AHL20(2)            <-----
-------->YAB1                       <---------ANAC58         ----------->GT1                  <-----
--------YAB1  --------->YAB1        <---------ANAC58<---------ATHB12   <-----------GT1        ------
--->GT1  --------->ICU4        --------->YAB1---------->DOF2----------->GT1                  -------
 
tattatattgaaataattcatagtgaaactgcaaacatagggtgcctataaagtaatcaagggatgttaaattttttctatctctgcattttgaaatttt  17789900
                                      ------>NtERF2
     <---------At4g35610             --------->ANAC46
     <---------ZAT2                  ------->GAMYB
     --------->ZAT2                  --------->DREB2C(2)
     --------->At4g35610             --------->RAP2.6(2)                          >>>>>>>>>>GT-3b
    <-----------RAV1(1)              --------->DEAR3(1)                  <---------TOE2(3)
---->ATHB12                         --------->MYB46(3)                  --------->DAG2
--->AHL20(1)              <---------YAB1                           --------------->AGL15
----YAB1<---------At4g35610       <---------ALFIN1    <----------DOF2  ---------->DOF2          ----
----AHL20(2)         <---------At4g35610    <---------ALFIN1--------->YAB1     ----------->GT1 -----
--->AHL20(2)         --------->At4g35610--------->DEAR3(1)--------->AHL20(2) ---------->DOF2 <------
-->AHL20(2)     <----------DOF2<-----------GT1 <----------DOF2     <---------------AGL15   <--------
 
attggctctgctgctatcactttcagcttatgattttccaccgccatccactttgctcttttaaaataatctcataaaggaaaagaaaaatacaattaac  17790000
    --------->AHL20(2)
    <---------AHL20(2)                                               ----------->TBP
--->GAMYB            ----------->RAV1(1)                     <---------ALFIN1
---->MYB46(3)      <------NtERF2                             --------->ANAC58
-----GT1    <---------ICU4    >>>>>>>>>MYB98                 --------->ANAC58
-MYB52(2)--------->YAB1      <-----------GT1           <---------ALFIN1     <------ZmHOX2a(1)
 
cacatattttaatcaaaatggctgcaacagtttaacatatcaaggtgctaatatacccacacacacacacttatatataggagctaatatagagtggtat  17790100
                                     --------->ARR11(3)
                                     <---------ARR11(3)
                                    <---------CCA1(2)
                                   <---------ARR11(3)
                                   --------->AHL20(1)
              <-----------TBP      <---------AHL20(1)     <-----------GT1
         --------->ANAC58     ------------>CBF            ---------->ID1              <---------GLK1(1)
         --------->ANAC58    --------->ANAC58     ---------->ID1     --------->YAB1   --------->GLK1(1)
       ---------->DOF2       --------->ANAC58 <----------DOF2      *TSS              <---------ARR14(2)
  <----------ID1      --------->ALFIN1  <----------DOF2  <-----------GT1             --------->ARR14(2)
 
aggttaagacaaaagccatatataagtggagaacccaatatatctttgtctttgttgttttttccttctcgttcatagttaacttgcagatttcttagta  17790200
                                                                              <-----------GT1
                                                                          --------->AHL20(2)
                                                                          <---------AHL20(2)
                                ------>ZmHOX2a(1)                      <----------DOF2
                           ---------->ID1                            ------>MYB83
                  <-----------GT1                   --------->ZAT14  ------>MYB46(1)
     <----------DOF2 <---------DAG2                 <---------ZAT14<---------MYB59
 
tttctaatctttttcttatattaaccttttgtctccttctctctctctctctctctgaactatacaaaaacctacttttaatttctcttccaagaagtca  17790300
                                                                                             <------
                                                                                           <--------
                                                                                        --------->YAB1
                                                                                       <------ZmHOX2a(2)
                                                      --------->ARR14(2)               =============
                                                  <-----------RAV1(2)              --------->LBD16
                          <---------ARR11(3)      ===========================RAV  <---------LBD16
                          --------->ARR11(3)     <------ZmHOX2a(2)             -------->P <---------YAB1
                          --------->ARR14(2)    --------->ARR14(2)           --------->MYB46(3) ----
                          <---------ARR14(2)    <---------ARR14(2)     <---------At4g35610--------->ICU4
              ----------->HVH21              --------->ALFIN1    ----------->RAV1(1)   =============
 
agaacccagaagaagacatgacaagtgaagttcttcaaacaatctcaagtggatcaggttttgctcagccacagagctcatcaaccctggatcatgatga  17790400
                                                             <---------AHL20(2)
                                                             --------->AHL20(2)
                                                         <---------AHL20(2)
                                                         <---------ICU4
                                                         --------->AHL20(2)     <---------ANAC58
                                              --------->ARR14(2)                <---------ANAC58
                                              <---------ARR14(2)               --------->STY1(2)
                                             <---------GLK1(1)                 <---------STY1(2)
                      <---------TOE2(3)      --------->GLK1(1)             --------->ZAT2   --------
---YAB1       ------>ZmHOX2a(1)         --------->LBD16  --------->ATHB51  --------->At4g35610
-ICU4 --------->WOX13(1)  ---------->DOF2--------->LBD16<---------YAB1     <---------At4g35610  ----
=====================HOX2a_HOX2a        <---------LBD16 --------->ICU4     <---------ZAT2  <--------
--->TEIL   ------>ZmHOX2a(1)     --------->GLK1(1)------>ZmHOX2a(1)<---------AHL20(2) <---------ICU4
==================HOX2a_HOX2a    <---------GLK1(1)--------->LBD16 --------->AHL20(2)  --------->YAB1
 
atctctcatcaatcctcctcttgttaagaaaaagagaaatctccctggaaatcctggtaattatttatattaaatctcagctagcttgatcatcacctaa  17790500
                                                                            --------->TOE2(3)
                                                                            <---------MYB59
                                                      <--------P      ------>ZmHOX2a(2)
                                                     <-------GAMYB  --------->ARR11(3)
                                                <---------ANAC58    <---------AGP1
                                         --------->AHL20(1)         <---------ARR14(2)
                                         --------->AHL20(2)         <---------ARR11(3)
                                         <---------AHL20(2)         --------->ARR14(2)
              <----------DOF2           --------->AHL20(2)         <---------CCA1(2)
           --------->ARR11(3)           <---------AHL20(2)<XXXXXXXXXXXXXXXXXXXXXMIR850
     --------->TOE2(3) <---------AHL20(2)<---------AHL20(1)      <---------HSFB2a(2)
->TOE2(3)  <---------ARR11(3)        --------->AHL20(2)<---------MYB46(3)<---------WRKY18(1)
------>DOF2<-----------ARR10   ------>NtERF2    <---------ANAC58 --------->HSFB2a(2)---------->DOF2
-ANAC55(2)<---------CCA1(2)<-----------GT1<---------AHL20(2)    <---------LBD16   --------->YAB1
 
aaagaaaaccctagtatcttttctatttttttgccccctataaattaattttcttgggttgttttgttctggatcttgacctaaatcaaaagtagtattt  17790600
                         <---------YAB1
              <------ZmHOX2a(2)     ----------->GT1             --------->AHL20(2)             <----
              <---------ZAT14      <---------TOE2(3)        <---------AHL20(2)           <---------ARR11(3)
             --------->ARR11(3)  <---------AHL20(2)      ----------->GT1         ------>ZmHOX2a(2)
<------NtERF2<---------ARR11(3)  --------->AHL20(2)  <----------DOF2  <----------DOF2    --------->ARR11(3)
 
ggctgcatgagttatagatcactggctcatgcttaattaatgtgaaaatactaggccttttagtaaattaaaacttttatttgatctatagagttcttct  17790700
<- Previous    Next ->

AGI:  At5g44160.1   
Description:  NUC (NUTCRACKER); nucleic acid binding / transcription factor/ zinc ion binding. similar to MGP (MAGPIE), nucleic acid binding / protein binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G03840.1); similar to Os01g0242200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042553.1); similar to hypothetical protein OsJ_001036 [Oryza sativa (japonica cultivar-group)] (GB:EAZ11211.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)
Range:  from: 17790168    to: 17792913    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version