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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                  <---------AHL20(2)
                                                                  --------->AHL20(2)
                                                                  --------->AHL20(1)
                                                             <---------AHL20(2)
                                                             --------->AHL20(1)
                                                             --------->AHL20(2)
                                                         <---------AHL20(2)
                <---------YAB1                           --------->AHL20(2)
               <---------AHL20(1)                       <---------AHL20(2)
               <---------AHL20(2)                       --------->AHL20(1)
              <---------------AGL15                 <---------AHL20(2)
              --------------->AGL15                 --------->AHL20(2)
             <---------YAB1                         --------->AHL20(1)
             --------->ICU4             <---------ANAC58<---------AHL20(1)
        <------MYB83                    <---------ANAC58--------->AHL20(2)                 ------>ZmHOX2a(1)
        ----------->GT1             ------->TEIL    <---------AHL20(1)                    --------->TOE1(3)
        <---------MYB46(3)     <---------ICU4      --------->AHL20(2)            <---------DAG2
        <------MYB46(1)     --------->YAB1<---------MYB52(1) <---------AHL20(1)  <----------DOF2 ---
      <---------WOX13(1)   <---------AHL20(2)      <---------AHL20(2)         <-----------GT1-------
    --------->ATHB12       --------->AHL20(2)  <---------AHL20(2)--------->AHL20(2)       --------->TOE2(3)
   <---------YAB1         --------->AHL20(2)   --------->AHL20(2)<---------AHL20(2)      xxxxxxxxxxx
 
ttgattttgattggttattatttttggaaattaataatgtatttcgttttttaattaaatttaattaattaaattagtatttgactttttaatccttaaa  17635800
                                                          ----------->GT1
                                       xxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                      <xxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)
                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                     <---------ANAC58    <---------TOE2(3)
                                     <---------ANAC58<---------ANAC55(2)
                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                 <xxxxxxxxxxxxxxxxsmallRNA(si3)
                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)
                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                <xxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                              <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                              <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
               <----------DOF2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
      --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
      <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
     <---------AHL20(2) --------->AHL20(2)           --------->ANAC55(2)
     <---------AHL20(1) <---------AHL20(2)         <---------AHL20(2)
     --------->AHL20(2) <---------AHL20(1)     <---------AHL20(2)
     --------->AHL20(1) --------->AHL20(1)--------->TOE2(2)
    --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    ===================
    <---------AHL20(2) --------->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s)            <---------ATHB12
 --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------TOE1(3)       <------ZmHOX2a(2)
-------->GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->AHL20(2)    ------->TEIL
--->DOF2  <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->AHL20(2)            ----
xxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------AHL20(2)           <----
 
gagataaattaatttactctttaaaattttatttctaatggcatacctatgtaattacttaaggttaatttaaatgtacttccgatcattttggtatagg  17635900
       ----------->GT1
    <---------LBD16                                                              --------->LBD16
    ----------->RAV1(2)   --------->YAB1                             --------->TOE2(3)
==HOX2a_HOX2a  <------------CBF                           ---------->DOF2      <---------LBD16
-------->CBF --------->AHL20(2)                  <-----------GT1     --------->TOE1(3)
--ZmHOX2a(1) <---------AHL20(2)              --------->AHL20(2)     --------->ZAT6
 
acaattcccctggttataaattgaaccgagcataaactgtaaaccgaagtaattacaccagtaaagcattaaccctaactaaaccgggtcgaaacattct  17636000
                                                                                         --------->YAB1
                                                                                      <----------DOF2
                                                          <---------HSFC1(2)     <---------ARR11(3)
                                                          --------->HSFC1(2)  <---------TOE1(2)
                                   <---------REM1(2)   ---------->DOF2     --------->TOE2(1)
       <---------ARR14(2)          <---------ZAT14  --------->ANAC58       --------->ANAC46
       --------->ARR14(2)          --------->ZAT14  --------->ANAC58       --------->TOE1(1)       <
       <---------GLK1(2)  <<<<<<<<<TBF1             --------->ANAC46      ------>ZmHOX2a(1)<--------
     <---------YAB1    <<<<<<<<<TBF1       ------------>CBF     ------------>CBF --------->ARR11(3)<
 
tctctattccgattctcactcgcttcttcttcttcgtcttcactgattcaatcccaagcaaagcttcttcaatcttcctcgtaagttctctttaatcact  17636100
                            <-----------GT1
                         <---------GLK1(2)
                         --------->ARR11(3)
                         <---------ARR11(3)
                        <---------RVE1(1)
                     --------->LBD16                                          <------ZmHOX2a(1)
                    <---------HSFB2a(2)                                <---------YAB1
             --------->ARR11(3)      --------->ZAT2                  --------->YAB1
  <-----------GT1   --------->HSFB2a(2)        <---------TOE2(3)     <---------ICU4
---------DAG2<---------ARR11(3)      <---------ZAT2                  -------->HAHB4
-ATHB12     <---------CCA1(2)        <---------At4g35610            --------->ICU4           -------
----------DOF2  <----------DOF2      --------->At4g35610         --------->ICU4             <-------
 
cacttttacatttctatatctttccagagattttcttcttagctgagattaagttttggaatcgagagataattatgcttaggagatggaacatagttat  17636200
              <-------TEIL
           <---------ANAC46
           <---------ANAC58
       <-----------HVH21                     <---------At4g35610                             -------
      --------->O2                         <---------RAP2.6(2)                       -------->ATHB1
      --------->ANAC46                    --------->RAP2.6(3)                        <---------ICU4
      --------->TGA1a                 ------>MYB83                                   --------->ATHB12
      <---------O2                    ------>MYB46(1)                               <---------YAB1
-->ATHB12  <---------ANAC58         --------->TOE2(3)                              --------->GLK1(2)
--YAB1--------->bZIP60(2)           <---------MYB59                       --------->DEAR3(1) <------
 
tgaatcgctacgtcgcgttcatagcagtgatttagaaaacctaatttcggcttccctatacaatcgaacactttgcacagcctcagaatcattgaatcat  17636300
                                         <---------ANAC58
                                         <---------ANAC58
                                    <---------ICU4
                                    --------->ATHB12
                               --------->ARR11(3)
                               <---------ARR11(3)
 <---------MYB46(3)    --------->At4g35610                            <-----------HVH21         ----
-->YAB1                <---------At4g35610                      --------->TOE2(3)      --------->At4g35610
---ICU4              >>>>>>>ZML2   <---------YAB1    <---------At4g35610 ---------->DOF2   ---------
 
ggtgttgttgatgagagttatgttctagctgaattatcttcattgcttccaatttcatctaataaaacctcagtgtcaaaggaagacagtagctcaaaga  17636400
                               <------ZmHOX2a(1)
                              <----------ID1
                         --------->At4g35610
                         <---------ZAT2
                         --------->ZAT2                                     <---------At4g35610
                         <---------At4g35610 --------->ALFIN1          --------->ANAC58            <
----->GLK1(2)        <-----------HVH21       <---------ANAC46          --------->ANAC58           <x
->DOF2    --------->ATHB12  --------->At4g35610--------->ALFIN1 ---------->DOF2     <---------At4g35610
 
atcaagtagctattgattcgtttttgtcagcagaggacaaacttagaggtgtgtttcttcagaaattgaaaggcaagtctgctattcagaagagtttgag  17636500
                                                                                                <---
                                                                                                <---
                                                                                                ----
                                                                                               <----
                                                                                              <-----
                                                                                              ------
                                                                                            --------
                                                                                            <-------
                                                                                            <-------
                                                                                           <--------
                                                                                    --------->ATHB12
                                                             <------NtERF2<---------DOF5.7(2)<------
                                                           <---------DEAR3(1)      <---------YAB1
---------ZAT6             <-----------RAV1(1)             <---------At4g35610    <----------DOF2<---
xxxxxxxxxxxxxxxsmallRNA(se3)                           ---------->DOF2 --------->YAB1 <---------WOX13(1)
 
tagtcttggtattggtttgagtattgacattgttgccgatgtattgaatcgagggaatttaagcggcgaagcgatggtaacgttctttgattgggcggtt  17636600
------ANAC58
------ANAC46
----->MYB52(2)
---TEIL<---------ANAC58    --------->At4g35610
----ARR14(2)               <---------At4g35610
--->ARR14(2)             <--------P
->MYB55(2)             <------MYB46(1)
--DEAR3(2)             <------MYB83                          ---------->DOF2        ------->TEIL
--MYB46(3)        <---------ARR11(3)                      <------ZmHOX2a(1)   <---------YAB1
-DEAR3(1)         --------->ARR11(3)                  <------ZmHOX2a(1)     --------->YAB1
-GAMYB <---------ANAC58<---------MYB46(3)         <---------MYB52(1)     <----------DOF2   ---------
------ANAC58  ---------->DOF2 <---------ZAT14    <-------GAMYB    <----------DOF2<---------WOX13(1)
 
cgtgagcctggtgtgactaaagatgttggtagctacagtgtgattttaagagcgttaggaaggagaaagcttttctcttttatgatggatgttctaaagg  17636700
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AGI:  At5g43820.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G15010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66251.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 17636175    to: 17639095    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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