AthaMap

For complete usage of AthaMap please enable JavaScript in the settings of your browser!

Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<-----------RAV1(2) ----------->RAV1(1) ------>ZmHOX2a(1) ------>NtERF2 --- <-----------GT1 ----------->HVH21 ------>NtERF2
aaacattaccttctcctccgcagatgattcttccttcaccagttactccctccgacaaaaactctgggcaaaccgatgttcacaattccactccgcgctc	17149900
------>NtERF2 <----------DOF2 --->NtERF2 <-----------RAV1(1) <------NtERF2 ----------->GT1
tgcctctctggctcacatatgccgctctctctctatttcggcatcgatgttctttgtctccgttttgtatgcattgatcatattgttgtaaaatctcttc	17150000
------>ZmHOX2a(2) <-----------GT1 <-----------GT1
atcgatcttatattatgtctcttactaatttaaactaaactataattgaatggactaaaacgaatataaacaaatgaataaccactaactagaatggttt	17150100
---- <---- <----------ID1 <-------TEIL ------>ZmHOX2a(1) ---------->DOF2 <----------- -------->P <---------PCF2 ------>ZmHOX2a(1) <-----------
agaccaactccattggagggtccttaagagtttctagtactgaatccttacaaaaagaagccaaaattaaatcagaaaaatgaaattaatcaaggtacgc	17150200
----------------->AGL1 <-----------------AGL1 <-----------------AG <------NtERF2 --->TEIL ------------>AtMYB77 -----ALFIN1 --------->ALFIN1 <----------DOF2 ----AtSPL3 <---------O2 <------------CBF ------------>CBF ------>ZmHOX2a(1) ----AtSPL8 <-------TEIL <-------GAMYB <----------ID1 <-----------GT1
accttagcttaggtattttgtgatgttttaggtgcgtatacgtggcggtttcccattgggtaaggtaagagacaaaacaattttttttctttcctctgtt	17150300
<------NtERF2 ------>NtERF2 ------>NtERF2 *TSS <------NtERF2 <------------CBF <-------TEIL -------->ATHB1 <-----------GT1 <------ZmHOX2a(2) <---------ALFIN1 -------
tgcgaaatcattgtctctcttctcttgttttctccggatgaattctctctcgatcagcttcatgcggcgtccacatcatcaaattggagaagataaccga	17150400
------->GAMYB xxxxxxxxxxxxxxxx>smallRNA(s) ----------->HVH21 <-----------ARR10 ----------->HVH21 <-----------HVH21 >GAMYB ------>NtERF2 <xxxxxxxxxxxxxxxx smallRNA(s) ------->TEIL
agaaaatcgtcccccttccgccgtgatcatcatctcaaccgacggtctcaacatctgtgacttcgaacataatcggcgattttgatgaaccaaatcggag	17150500
<------ZmHOX2a(1) ---------->DOF2
agagaagattaataagatagttttgaggaagaaatcacaattagagcttaaagcaagaataaatcacaatcacaagatgagaatttttcggacaacgtag	17150600
------>ZmHOX2a(1) <----------DOF2 ----- ================================HOX2a_HOX2a <-----------GT1 ----------->HVH21 ------>ZmHOX2a(2) ----------->HVH21 ------->GAMYB ===================== ---------->DOF2 ----------->GT1 ------>ZmHOX2a(1) ====================HOX2a_HOX2a
tgataatcagtcaatcggagaaagaaggtgacccgagtgttataaccatcaattgtcctgacaaaacgggtctaggttgtgatctttttcgtatcctcct	17150700
<------NtERF2 ------>NtERF2 <-----------RAV1(1) ->ZmHOX2a(1) ----------->GT1 <----------DOF2 <-------- ==HOX2a_HOX2a <------ZmHOX2a(1) <--------HAHB4 <-----------RAV1(1)
cttcttcggcctcaacattgtctgaggaggtaacaattccatctcatcattacactttgtgtggttttcaaaaatttcttatttttgatatctgctgtgg	17150800

AGI:	At5g42720.1
Description:	glycosyl hydrolase family 17 protein. similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT4G34480.1); similar to unknown [Populus trichocarpa] (GB:ABK95331.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781)
Range:	from: 17147414	to: 17150071	Orientation: Forward
Links:	TAIR MIPS

AGI:	At5g42730.1
Description:	expressed protein, similar to Adagio 3 (Arabidopsis thaliana) GI:13487072/FKF1 (Arabidopsis thaliana) GI:6960305
Range:	from: 17150313	to: 17151443	Orientation: Forward
Links:	TAIR MIPS

printer-friendly version