Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->YAB1      --------->ICU4      <---------YAB1               --------->AHL20(2)   <---------AHL20(2)    --------->YAB1         ------>ZmHOX2a(2)        <---------AHL20(2)    <---------ICU4        <------ZmHOX2a(2)        --------->AHL20(2)   <---------AHL20(2)    --------->ARR14(2)        <---------AHL20(1)   --------->AHL20(2)    <---------ARR11(3)        <---------AHL20(2)   <---------ATHB51      --------->ARR11(3)    <---------AHL20(2)                               <----   --------->ICU4        <---------ARR14(3)    --------->AHL20(2) --------->AHL20(2)            <---- --------->YAB1          --------->ARR14(3)   <---------WOX13(1)  <---------AHL20(2)        <-------- ------>GT1              --------->AGP1     ----------->GT1<---------TOE1(3)               <---------AHL20(2) --ATHB12                <---------ARR14(2) --------->ATHB12 <------ZmHOX2a(1)           <---------YAB1 ------>ANAC81           <---------AGP1    <---------YAB1  <---------TOE2(3)          --------->AHL20(2)   gaaaaataattataagttcaaattcaagatcttaaaaaaaaatagatgattaattaattttaaggaatttaaattttaaaattttagatttattatttta  16276100                          <---------AHL20(2)                          --------->AHL20(2)                        <---------YAB1                   <------ZmHOX2a(1)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------TOE2(3)            <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             ---------->DOF2          <---------TOE1(3)     <---------TOE2(3)     ----------->GT1 -----TOE1(3)    <---------TOE1(3)          <---------AHL20(2) -----TOE2(3)    <---------TOE2(3)   <-----------GT1 <---------TOE1(3) -YAB1    <---------TOE2(3)     <---------TOE1(3)    <---------TOE2(3) ----------->GT1   ggtttagtttttagggtttaaggattatttttttagggtttactatttagttttgaaggtttaaagttcaatacagtattaaacttgtggtattttcaga  16276200                                                                                      <---------YAB1                                                                                 -------->HAHB4                               <----------ID1                                    --------->YAB1                          --------->ATHB12                                       <---------ICU4                    <---------TOE1(3)                       --------->YAB1      <---------YAB1                    <---------TOE2(3)                      <---------YAB1      <---------TOE2(3)              --------->AHL20(2)                        --------->ICU4        --------->YAB1              <---------AHL20(2)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->AHL20(1)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->ANAC58   -------->ATHB1           ----------->GT1          <---------YAB1       --------->ANAC46   --------->ATHB51    --------->AHL20(2)            --------->ICU4       --------->ANAC58  <---------YAB1       <---------AHL20(2)        <-----------HVH21   aaaaaaaacacacaaattttttaaggtattattggaacaaaaactcattaaaatggtatttatgagaatggccctgtcattaatgataacaattgttttg  16276300                                                                                                    <                                                                                                    -                                                                                                 xxxx                                                                                               <xxxxx                                                                                           <xxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                  --------->At4g35610                                                                                  <---------At4g35610                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <------NtERF2 <-------                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             --------->RAP2.6(2)-----                                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                              <-------MYC3                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           ----------->GT1                    ------->MYC3           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------AHL20(2)                     <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->AHL20(2)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------AHL20(2)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------AHL20(2)                  <----------ID1<-----------GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->AHL20(2)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------AHL20(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>ZmHOX2a(1)xxxxxxxxxxxxxxxx --------->AHL20(2)         --------->YAB1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxx --------->AHL20(1)      --------->WOX13(1)<xxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------AHL20(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---   aaatttaattaaatcgtattatttgatcaatcgtatttttgggacaaacgtggtttacctcttctctctccttctgaagtcgccatctgaaaactctttt  16276400               <------NtERF2               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxsmallRNA(i)             <---------TCP20            <xxxxxxxxxxxxxxxxsmallRNA(i)           --------->ORA47(1)           ------>NtERF2          --------->ATERF1(2)          <---------ATERF1(2)          --------->DEAR3(1)         --------->ORA47(2)         <xxxxxxxxxxxxxxxxsmallRNA(i)         <------NtERF2         --------->ATERF1(1)        <---------ATERF1(1)        <---------RAP2.3(1)                                                                         -        ------>NtERF2                                                                               -        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                x        xxxxxxxxxxxxxxxx>smallRNA(i)                                                                <       --------->DEAR3(1)         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xx       <---------DEAR3(1)         --------->HSFC1(2)                                               xx       --------->ANAC46           <---------HSFC1(2)                                               xx     <---------ATERF1(1)         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                xx    ------->GAMYB                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <xx    ----------->HVH21            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              xxx    --------->DEAR4(1)           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xxx    --------->At1g77200          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          <xxxx    --------->DREB2C(2)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <xxxx    --------->DEAR3(1)         <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                       <xxxxxxxxxxxxxx   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                --------->LBD16-   --------->DEAR3(2)        --------->ETT(1)                                    xxxxxxxxxxxxxxxxxxxx   --------->MYB46(3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  <xxxxxxxxxxxxxxxxxxxxx <---------ALFIN1        --------->ALFIN1                                      <------MYB46(1) xxxxxx ---------MYB55(2)      --------->REM1(2)                                     <---------MYB46(3)xxxxx -------->MYB46(3)     --------->ALFIN1                                       xxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxsmallRNA(si3)<---------MYB46(3)                                <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------MYB52(1)   xxxxxxx xxx>smallRNA(i)     <---------ANAC58                                  <---------ANAC58      xxxxxxxx xxxxxxxxxsmallRNA(si3)<---------MYB52(1)                              <---------ANAC58     xxxxxxxxx xxxsmallRNA(si3)    <---------ANAC58             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     xxxxxxxxx xxsmallRNA(si3)  --------->ANAC58--------->HSFB2a(1)      >>>>>>>>>TBF1--------->LBD16    xxxxxxxxxx xsmallRNA(si3)----------->HVH21xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ANAC46    <xxxxxxxxx ---DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------TOE1(2) xxsmallRNA(si3)  --------->ANAC46<---------HSFB2a(1)    *TSS        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxsmallRNA(se3)  --------->ANAC58xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxsmallRNA(fl3)<---------ALFIN1xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ALFIN1<xxxxxxxxxxxxxxxx ----->ARF1<---------ATERF1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxx>smallRNA(si3) <---------ANAC46  <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxx xxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)>>>>>>>>>TBF1<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------GT1<------NtERF2<---------AtMYB61<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------MYB83<xxxxxxxxx   ctcccaccgacgccggcctcacgccgtgtggtcggaaatttcttttgatgcccaagaagaagaagaagcccctccgtgggctggtccctggtacttctaa  16276500                 <-------PIF4                 ------->PIF4                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <-------MYC2              <---------ANAC58              <---------ANAC46         <xxxxxxxxxxxxxxxxsmallRNA(i)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       ------>NtERF2       <---------RAP2.6(3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------ANAC46      <---------ANAC58      <---------ANAC58     --------->ATERF1(1)     <------NtERF2    <---------ATERF1(1)    --------->ABI4(2)    <---------ZAT18    ------>NtERF2------->PIF5   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  xxxxxxxxxxxxxxxx>smallRNA(i) <------MYB83 <---------ANAC58 <---------ANAC58<-------MYC3 <------MYB46(1) ------->MYC2 <---------ANAC58------->MYC3 -------->MYB59  <-------PIF5 -------->MYB46(2)       <---------ZAT2       <---------MYB46(3) xxxxxxxxxxxxxxx>smallRNA(i)              <xxxxxxxxxxxxxxxxsmallRNA(i) ---------DEAR3(1)       <---------At4g35610 xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     ---------->DOF2 xxxxxxxxxxxxxxxxx>smallRNA(si3)      <------NtERF2 xxxxxxxxxxxxxx>smallRNA(i)          xxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <-----------HVH21                     ------>NtERF2          --- xxxxxxxxxxxxx>smallRNA(i)           ------>NtERF2                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->RAP2.3(3)                   <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxsmallRNA(fl3)      --------->DEAR3(1)                   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->RAP2.3(1)                  ------>ZmHOX2a(1)xxxxxxxxxxxx xxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  ----------->RAV1(2)       <xx -------->MYB52(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxsmallRNA(fl3)<---------ANAC58   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------At4g35610       <-- xxxxxxxxxx>smallRNA(i)  --------->ZAT2<---------WRKY12       --------->DEAR3(1)    <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxxsmallRNA(i)------>NtERF2        xxxxxxxxxxxxxxxx>smallRNA(i) >smallRNA(si3) <---------ANAC58  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->At4g35610       <xx xxxxxxxxxxxx>smallRNA(si3)      --------->ANAC46             ----------->HVH21     xxxxxxxxxxxxxxxxx xxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--- xxxxxxxxxxxxxx>smallRNA(si3)  <---------ALFIN1 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxsmallRNA(i)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxx xxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<----------DOF2   <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->AtMYB61<--------P xxxxxxx xxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ------>ZmHOX2a(1) ----------->RAV1(2)xxxx xxxxxxxxxxxsmallRNA(si3)--------->At4g35610xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   gttcggtgccgtcttagcgcgtgcttcagctcccctcgccgtcaaaggtcgttcttcttttcctccgacctctcctctgcccctggttgtctctccagcg  16276600                                            <---------MYB46(3)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <------NtERF2        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxx>smallRNA(i)                 ------>NtERF2     <-----------HVH21              <---------ATERF1(1)------>ZmHOX2a(2)              <-----------HVH21  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <-------TEIL        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            ------>ZmHOX2a(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <------ZmHOX2a(2)   <---------AGP1          --------->AGP1       <-----------ARR10                         <---------ARR14(2)          <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------ARR14(2)   --------->ARR14(2)                        <---------MYB52(1)          --------->ARR14(2)   --------->ARR11(3)                   <xxxxxxxxxxxxxxxxsmallRNA(i)          <---------GLK1(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxx>smallRNA(i)  <-----------RAV1(2)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->At4g35610   <---------ARR11(3)               <xxxxxxxxxxxxxxxxsmallRNA(i)         <---------At4g35610   --------->AGP1<xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)----------->ARR10 <xxxxxxxxxxx        ----------->ARR10  --------->ZAT18  <-----------RAV1(1) ---------->DOF2       <xxxxxxxxxxxxxx      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxx    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)=================RAV  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <  =================HOX2a_HOX2axxxxxxxxxxxxxxxx>smallRNA(i)   --------->AtLEC2 xxxxxxxxxxxxxxxxxxxxxxx  ------>ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --  =====================================HOX2a_HOX2a      --------->MYB52(2)  --------->ANAC58       --  ================HOX2a_HOX2a <---------CCA1(2)       <---------MYB52(1) --------->ARR14(2)  xxxxxxxx <xxxxxxxxxxxxxxxxsmallRNA(i)----------->ARR10        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxx ------>ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  ---------->ID1<--- xxxxxxxx>smallRNA(si3)    <---------ZAT14<---------GLK1(2)<---------ANAC58 --------->ANAC55(2)  <--- xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i) -- -------ARR14(2)<---------DEAR3(1)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxsmallRNA(fl3)<------ZmHOX2a(2)     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxx xxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC58 --------->ANAC58<xxxxxxxx ------>GLK1(2) --------->DEAR3(1)<xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxx xxxxxxxxxxxxsmallRNA(i)   --------->ZAT14xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ARR14(2)    <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxx>smallRNA(i)  <---------ZAT18xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   attcctgcctcagatccgtcgcctcttagtgcagatctgtcccagattgttgcctcgttagtcgtgcaaagctcagttacgccttgtccctctgaaattg  16276700                                    ============================================MYC_MYB                                    --------->TGA1a                                    <---------O2                            --------->ALFIN1                           <---------MYB52(1)              <---------ARR11(3)    --------->O2              --------->ARR11(3)    --------->ANAC58              <xxxxxxxxxxxxxxxxsmallRNA(i)            <---------ARR11(3)      <---------TGA1a           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------At4g35610          <---------YAB1<---------LBD16           --------->ZAT2        --------->YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <---------At4g35610xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      --------->At4g35610       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------ZAT2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <-----------RAV1(2)    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->TGA2(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->TOE2(3)                                   xxx   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      <--- <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------MYB52(1)                              <xxxxxxxxxxxxxx xxxxxxxxsmallRNA(si3) ------>NtERF2===========================================MYC_MYB<xxxxxxxxxxxxxx xxxxxxsmallRNA(si3)  --------->DEAR3(1)   --------->ARR14(2)                     xxxxxxxxxxxxxxxxxxx xxxxxxsmallRNA(fl3) --------->ATERF1(1) <---------At4g35610                      xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------TGA1                           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) >smallRNA(fl3)     <---------ATERF1(1) --------->MYB52(2)                      ---------->DOF2  xxxx ------->ANAC58     ------>NtERF2   --------->bZIP60(2)                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------->ANAC46    --------->ANAC46 --------->ANAC58<---------MYB46(3)         <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxx>smallRNA(le3)       --------->TGA2(1)                    <---------MYB46(3)<xxxxxxxxx xxxxxxxxxxxxxx>smallRNA(si3)       <---------bZIP60(1)                <-------GAMYB  xxxxxxxxxxxxxxx ------ANAC58--------->GLK1(1)      <---------TGA2(1)                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------ANAC58<---------GLK1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->ANAC58    <xxxxxxxxxxxxxxxxsmallRNA(i)------>ZmHOX2a(1)      <---------MYB46(3) <---------ATHB12 xxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ------------>AtMYB77<xxxxxxxxxxxxx xxxxxxxxxxxsmallRNA(si3) --------->LBD16--------->At4g35610      ----------->HVH21 <xxxxxxxxxxxxxxxxsmallRNA(i) >smallRNA(si3)    --------->DEAR3(1)<-----------HVH21         <---------MYB46(3)xxxxxxxxxxxxxxxxxxxx xxxxsmallRNA(se3)<---------LBD16   --------->bZIP60(1)       xxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---   ctcgcccctctgatgatatctccgcctccggtgttgagacgtcagtttcctcagctgttaacaagttgttgacggttgtcacaaatgcccaatcgactgt  16276800                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                   <x                                                                                     <xxxxxxxxxxxxxxx                                                                               <---------ZAT14     xx                                                                              <-----------RAV1(1) ---                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                           --------->LBD16        ---                                                                          <---------ANAC46        ---                                                                          <---------TGA1a         ---                                                                          --------->TGA1a        xxxx                                                                          ===========================                            <------ZmHOX2a(1)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxx                  --------->ARR14(2)                  --------->DEAR3(1)  <---------O2 <xxxxxxxxxxxxx                  <---------ARR14(2)                 xxxxxxxxxxxxxxxx>smallRNA(i)  <---------HSFB2a(2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ================================RAV   <xxxx                  <---------ARR11(3)  ----------->HVH21   ----------->RAV1(2) --------->ALFIN1<------            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------At5g28300   <---------ANAC58   xxxxxxxx           <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxx          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxx       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------WRKY38(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(i)   --------->GLK1(2)  <-----------GT1   ------>ZmHOX2a(1) <xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->O2<xxxxxxxxxxxxxx ------ANAC58    <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-------GAMYB<xxxxxxxx xxxxxxxsmallRNA(se3)      --------->LBD16 <xxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxsmallRNA(si3)     <-----------RAV1(2)<---------TOE2(3)       <---------ALFIN1 <xxxxxxxxxxxxxxx xx>smallRNA(si3)<---------CCA1(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  =============MYC_MYBxxxxxxx xxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ALFIN1  --------->HSFB2a(2) xxxxxxxsmallRNA(i)   ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ANAC58<xxxxxxxxxx x>smallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)<---------ANAC46---- xxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxxx >smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxx ------ANAC58 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxx   cgtttcgacggacttggccatatcctctcaggagaagctcgtgactgaggtagtcaccgctcctgcccctcctctcccgtgtgttgtggaagtagaagca  16276900          xxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <--------P        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->REM1(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->LBD16    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------ANAC46   <---------LBD16   <xxxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----->MYB83 xxxxxxxxxxxxxxxxsmallRNA(i) ----->MYB46(1) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>MYB46(3) ------>DEAR4(1) ------>DREB2C(2) ------>DEAR3(1) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) ================MYC_MYB                                                     --------->GLK1(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       ------>ZmHOX2a(2) xxxxxxxxxsmallRNA(fl3)                                                 --------->ARR14(1) xxxxxxxxxxxxsmallRNA(i)                                                <------ZmHOX2a(2) ---ABI4(2)                                                             --------->CCA1(2) xxxxxxxxxxxx>smallRNA(si3)                                   <---------ARR14(2) xxxxxxxxsmallRNA(i)                           --------->ANAC46        <---------ARR14(2) xxxxxxxxxxxxxxsmallRNA(fl3)                   --------->ANAC58        <---------ARR11(3) xxxxxxxxsmallRNA(si3)                         --------->ANAC58        <---------AGP1 xxxxxxsmallRNA(si3)                          --------->HSFB2a(2)      --------->ARR14(2) xxxxxxxxxxxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxsmallRNA(fl3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------GLK1(2) xxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->AGP1<--------P xxxxx xxxxxxsmallRNA(i)               <-----------RAV1(2) ------->GAMYB   ----------->ARR10         <----- ----->DEAR3(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) >smallRNA(se3) <---------YAB1  <---------At4g35610--------->At4g35610 <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ARR14(2)    <-------GAMYB xxxxxxsmallRNA(si3)        --------->ALFIN1  <---------HSFB2a(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ccgactccgggtagaattgtgagtgctactgtggagcaggtttctgttccagcaactgaaccaaaatcccctagatccgattcttgggttgatttagtga  16277000  Previous    Next  AGI:  At5g40605.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.7e-45 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 16276457    to: 16281693    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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