AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
------>ZmHOX2a(2) <-----------GT1 <------ ------->TEIL <------ZmHOX2a(2) <-----------GT1 ------>ZmHOX2a(1) ------->TEIL
tgtgactatttacactcatgtatttccaatcctatttatattagtgttttttattttataaatgttttcatttatacatatgaattgttcaatggatcca	15963600
--------------->AGL15 ------->GAMYB =========================================================MADS_MADS <----------ID1 ----------->GT1 -TEIL <-----------GT1 ---------->DOF2 <---------------AGL15
tattttaataaccacaaatttgcaaataaaattagaaaaagttactaaaaatatatattatcttaagattgattttaatttatttatatatttagcataa	15963700
<-----------GT1 ---------->DOF2 <-----------RAV1(1) ------------>CBF <------------CBF <-----------GT1 <------------CBF <-----------GT1
gatttgtagatttttttttttaacaataaagtttttactcttatcataagtaattgtctaattgttgcgagcaaattataaacccttgtagaacaaaaat	15963800
<---------------AGL15 ---------->ID1 <---------ALFIN1 --------------->AGL15 <-----------GT1 <---------ALFIN1 <-----------RAV1(2) <-----------------AGL3 ----------->GT1 <----------DOF2 ------>ZmHOX2a(1) <-------TEIL <-----------GT1 <------
agtgtagggtttatcatttctcgctttaaacgcccaccatcctctctatatctctctccaggtacgcttcgagctcgtttttactatttttagtctcttt	15963900
------>NtERF2 <------NtERF2 ---------->DOF2 <-----------GT1 ----------->GT1 ----DOF2 <------------CBF <----------DOF2 <------------CBF <----------DOF2
tgaatccaaaaccattgtaaaggagccgactttttttccaactgtactctacaaaattgtcaaatttcaaaactttttgattcgagttcgtgaaccatgg	15964000
-- <-- <<< <<< <<< <<< <------NtERF2 <----------DOF2 <--- --------->ALFIN1 ----------->ARR10 <-----------GT1 <-----------GT1 <-----------ARR10
cgagaggcgtagctggagttttgcgtagagcctatagttcaagagttacggttctattctcgacacgaaatttacattcttttagagaatctgagtctag	15964100
<----------DOF2 ---->ZmHOX2a(2) ----ZmHOX2a(2) <<<<<<GATA-3 <<<<<<GATA-1 <<<<<<GATA-2 <<<<<<GATA-4 ------AGP1 ------->TEIL <-------TEIL <---------AtLEC2 <---
atctctttgtaattctgattttgatgtgcccacgaaccggttttgttcgggtaatcgggttcggattcagtttccatggaatgattacagatttgggtgc	15964200
<--------P ---------->DOF2 --------->ALFIN1 ----------->GT1 <----------DOF2 ------->GAMYB <-----------RAV1(1) -------DOF2 <------ZmHOX2a(1) ----------->GT1 ---------->DOF2
tttgagattggtaaagttaggagcttttcgtctactgtggataataacggcgaaaatgatgatattgaagaaagtgttggttctgagagtgatgattatg	15964300
----------->HVH21 <------ZmHOX2a(1)------->TEIL <--------P <
atgaggaaggtttgattaatgaacttagtgatgtagatgaaggcttgttgaatgattcagtggttgctgagacggatgagattggtagcgaggctgctcg	15964400
------>ZmHOX2a(1) =====================HOX2a_HOX2a ------>ZmHOX2a(2) <------ZmHOX2a(2)--------->ALFIN1 ======================HOX2a_HOX2a ----------DOF2 ------>ZmHOX2a(2) <-------TEIL
tgctttgaacgatcggtatcatgatcctgtggagttgtacagggagcttaggggaagtgaagtgcgttctaagcttcagcatagtgaatgggatagtcta	15964500

AGI:	At5g39840.1
Description:	ATP-dependent RNA helicase, mitochondrial, putative. similar to ATSUV3 (embryo sac development arrest 15) [Arabidopsis thaliana] (TAIR:AT4G14790.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60906.1); similar to hypothetical protein OsJ_014453 [Oryza sativa (japonica cultivar-group)] (GB:EAZ30970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14959.1); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/RNA helicase, C-terminal; (InterPro:IPR001650)
Range:	from: 15963997	to: 15966414	Orientation: Forward
Links:	TAIR MIPS

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