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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                  <---------At4g35610
                                  --------->At4g35610
                                 ----------->RAV1(1)   ---------->DOF2
                          <---------ANAC58    <-----------ARR10
                          <---------ANAC58    --------->GLK1(2)
                    --------->ARR11(3)        --------->ARR14(2)
                    <---------ARR11(3)        <---------ARR14(2)
                   <---------CCA1(2)         <---------CCA1(2)   --------->DAG2
       ----------->GT1 <----------DOF2 --------->ARR14(2)       ---------->DOF2   ---------->DOF2
 --------->YAB1  --------->AHL20(2)    <---------ARR14(2)----------->GT1       --------->AHL20(2) <-
 
agaatcgtgatggtaaacttttaaatctttcttgtccagcagtatcccaaatctgtgcgaaagaaaaaaaagtgtttttgaataaaaaagattaacttgt  15882600
                     ----------->GT1
                   <---------ANAC58
                   <---------ANAC58
                 <---------AHL20(2)
             <---------AHL20(2)
            <---------AHL20(1)
            --------->AHL20(2)
            --------->AHL20(1)
            <---------ARR11(3)
            --------->ARR11(3) <---------bZIP60(2)                                               ---
            <---------AHL20(2) <---------ANAC58    <-----------ARR10                          <-----
         --------->AHL20(2)    <---------ANAC58    --------->ARR14(2)                        -------
 --------->MYB52(1)<---------ANAC46  <----------DOF2                        --------->AHL20(1)------
--------ANAC46   <-----------GT1   ---------->ID1  <---------ARR14(2)       --------->ARR11(3)<-----
 
ggagtaagggattaatatatttacttgtaaaatgacttgtctttctgcgatacaaatctccttggtgactaaatctacatatattgtagaattatgtagc  15882700
                                                                        --------->MYB52(1)
                  --------->ARR14(2)<---------YAB1                      <---------DOF5.7(2)
       <---------ANAC58        --------->ANAC58                 ---------->DOF2
------>At4g35610  <---------ARR14(2)<---------TOE2(3)      --------->CCA1(2)
----At4g35610     ------->TEIL --------->ANAC58           --------->ARR11(3)                   <----
>TEIL  <---------ANAC58    ----------->RAV1(1)            <---------ARR11(3)           --------->ANAC58
--->At4g35610    <---------CCA1(2)  <---------TOE1(3)   ----------->ARR10 ----------->GT1      -----
----ZAT2   <---------YAB1------>NtERF2     <-----------GT1<---------ARR14(2)           --------->ANAC58
 
tgcttaaaatccttgtcattgtatcttcggccacaagttatggtttttacaacgatgggaagatatagaaagagataacgaaaatatagcaagccgaaga  15882800
                                                                   ------>MYB46(1)
                                                                   ------>MYB83
                                       <---------ARR14(2)          -------->P
             --------->AHL20(2)        --------->ARR14(2)        <---------MYB46(2)
            --------->AHL20(2)>>>>>>>>>RAP2.2 <----------DOF2   <---------ANAC58          ----------
-----ARR11(3)<---------AHL20(2)       <------ZmHOX2a(1)         <---------ANAC58      ---------->DOF2
---->ARR11(3)--------->AHL20(1) ---------->DOF2 --------->REM1(1)<---------MYB59<---------ZAT6     -
 
tttaacagaaaccaaaaaaattgaaatgtgcaatctaaagaggataccgcttcaacagtgatgttttgcctaccctgcatagagagttagaaagaaagga  15882900
                                                                                     ------>ZmHOX2a(2)
                           <---------ARR14(2)                                      <---------ARR11(3)
                           <---------ARR11(3)                               ================HOX2a_HOX2a
                           --------->ARR11(3)                  --------->ANAC46    --------->ARR11(3)
                           <---------ARR14(3)                  --------->ANAC58   --------->YAB1
                           --------->ARR14(3)                  --------->ANAC58 <---------KAN4(2)
                           --------->GLK1(2)              --------->ZAT14------>NtERF2
>DOF2                <---------HSFB2a(2)   ---------->DOF2--------->ARR14(2)<------ZmHOX2a(1)
-------->ZAT6  ---------->DOF2 ----------->GT1     <-----------GT1      --------->DEAR3(1)  <-------
 
aaacactagtttttaagagaaagtctcgaaaatcttgaaaaatagacaaagttttaactagtatacccgctatcgccgaggagaatgatcttaagctttg  15883000
             --------->ANAC46
             --------->ANAC58
             --------->ANAC58
          --------->ZAT18
       --------->ANAC58           --------->KAN4(2)                                             <---
   <---------HSFB2a(2)           --------->KAN4(1)                                              ----
   --------->HSFB2a(2)           <---------KAN4(1)                                              ----
<-----------GT1---------->DOF2 <------------CBF                   --------->CCA1(2)     ---------->DOF2
---DOF2--------->ANAC58  <---------ZAT14  <---------GLK1(2)<-----------GT1          --------->GLK1(1)
 
ttttttccataagcacacgaaagaagtctacagagattgttccctgattctatttctgaaattttcaagttatgggtttttggacagaaatcaaagaagt  15883100
                                             <---------YAB1
                                           <---------ICU4
                                           --------->ATHB51
                                           <---------AHL20(2)
                                       <---------YAB1
                                       --------->AHL20(2)
                                       <---------AHL20(2)
       ----------------------->TaNAC69(2)  --------->AHL20(2)
 <---------ZAT14                ------------>CBF --------->AHL20(2)
 --------->ZAT14        <------------CBF  --------->ICU4
 --------->ZAT18    --------->ANAC58  <---------AHL20(2)
------ZAT14         --------->ANAC58  --------->AHL20(2)
----->ZAT14         --------->ANAC46 --------->YAB1             --------->MYB52(1)       ------->TEIL
----->ZAT18<-----------GT1    --------->WOX13(1) <---------AHL20(2)              ------->TEIL<------
 
ctactgtactgtttctaccatctacgacattgtctatcaattttaattatttttaattttgaagagagaacgggctcttatatgaaactatgaaccgtta  15883200
                                                                      --------->TOE2(3)
                                                                      --------->YAB1
                                                                    <---------ARR11(3)
                                                                    --------->ARR11(3)
                                             <----------DOF2     --------->AHL20(2)
                                          <-----------GT1        <---------AHL20(2)
                 --------->YAB1     --------->AHL20(1)         ----------->TBP
              --------->WOX13(1)    <---------AHL20(1)        <---------AHL20(2)
            ------------>CBF        <---------ARR11(3)       --------->AHL20(2)            <--------
            <------NtERF2           --------->ARR11(3)  --------->TOE2(3)               --------->YAB1
           --------->ANAC58   --------->TOE2(3)       <-----------ARR10               --------->ANAC58
       --------->ANAC58     <---------ARR11(3)        --------->ARR11(3)              --------->ANAC58
       --------->ANAC58     --------->GLK1(2)<---------DAG2 <---------YAB1   <---------ANAC55(2)
<------------CBF<---------ATHB12   <---------AHL20(2) <---------ARR11(3)     --------->ANAC55(2)
---MYB52(1)--------->ANAC58 --------->ARR11(3)        --------->GLK1(2)    <-----------GT1 ---------
 
tgccattgccaggccagcaatcaaacccaaaaatctaaatattttttactttttgaaaatcttattatataaatcttaatacgtttcacaagaattatat  15883300
                                                                                         --------->ANAC55(1)
                                                                                         <---------ANAC55(2)
                                    --------->ATHB12                                     <---------ANAC55(1)
       <-----------TBP<---------ARR14(2)                                          <---------ICU4
       --------->AHL20(2)     --------->DAG2                                    <---------AHL20(2)
      --------->AHL20(1)     ---------->DOF2                                   --------->YAB1
      <---------AHL20(1)  ------>ZmHOX2a(1)     <---------------AGL15        --------->AHL20(2)
     --------->AHL20(2)   --------->LBD16       --------------->AGL15    <---------YAB1  --------->ANAC55(2)
 --------->AHL20(2)<---------ALFIN1<---------YAB1                       --------->ARR11(3)
-AHL20(2)         <---------At4g35610        <-----------GT1            <---------ARR11(3)  ------->TEIL
>AHL20(2)         --------->At4g35610 <---------WOX13(1)               --------->YAB1   <-------TEIL
 
acactaaaatatatatagttcagcacatcctgaaaagtgtgattgaatttactaaattttgacaagtttttatatgatcatataatattgatacgtattt  15883400
                                   --------->ANAC55(2)
                                   <---------ANAC55(2)       --------->ICU4             <---------AHL20(2)
                                   <---------ANAC58          <---------YAB1          <---------AHL20(1)
                       --------->AHL20(2)                  --------->ANAC55(2)       --------->ARR11(3)
            <------MYB46(1)        <---------ANAC58<---------AHL20(2)       <---------AHL20(2)
            <------MYB83 --------->YAB1         --------->MYB52(2)          --------->ATHB12
       <---------YAB1  --------->AHL20(1)       ----------->GT1  --------->AHL20(2)  <---------ARR11(3)
--------->ANAC58      --------->YAB1          <---------MYB52(1)<---------YAB1       --------->AHL20(1)
--------->ANAC58    --------->AHL20(2)     ------->TEIL  <-----------GT1 --------->TOE2(3)    <-----
 
cacaagaattttgataggtgtcaaaaaataatagcaatgcgtaatgtatgttagttaaatttacatgattatataacatttattgaaatattttttttta  15883500
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AGI:  At5g39620.1   
Description:  AtRABG1 (Arabidopsis Rab GTPase homolog G1); GTP binding. similar to AtRABG2/AtRab7A (Arabidopsis Rab GTPase homolog G2), GTP binding [Arabidopsis thaliana] (TAIR:AT2G21880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67538.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain RNA polymerase sigma factor 54, interaction; (InterPro:IPR002078)
Range:  from: 15881394    to: 15883010    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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