AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
----------------->AGL1 <----------DOF2 ---------->DOF2 -----GT1 <-----------GT1 <---------ALFIN1 <----------ID1 <----------ID1
tatcatttcttttacggtttctaccaccaccggttttgcatcagaagcaagacgtttctaagaagccaaaatgccaaaatagagagacaaaaacacacac	15184600
---------->ID1 <-----------GT1 <-----------GT1 <----------DOF2 ---------->ID1 <----------DOF2 ----------->GT1 <-----------GT1 <----------DOF2 <------
gtattgatcagaaaattgttaatttaatctactggtatattgatatatatatagattttctttttcttttttcctttttccccggaacttatggttcttt	15184700
<--------HAHB4 ----------->RAV1(2) ------->TEIL -------->ATHB1 --------->AtLEC2 --------------->AtSPL8 ---------->DOF2 <-----------HVH21 --------------->AtSPL3 ----DOF2 <-------TEIL <<<<<<<<<RAP2.2 <------NtERF2 <-----------HVH21
ttttcagtcaaagagcttatggttcatatgtagcaaaatttagatatgtcatacaaatagtggaggcaatacgtacctgtccctcggaattattagcata	15184800
------>ZmHOX2a(1) ---------->DOF2 <--------ATHB1
actgtgttctccatctcctcccttcatgcttagaacacccatgtttaaagtccctataatacataataatttgacttgattagattatatactaaatcaa	15184900
------>ZmHOX2a(2) <------ZmHOX2a(2) ---------->DOF2 ----------->GT1 ----------->GT1 *TSS <---------AGP1 ---------->DOF2 <----------ID1 <---------AtLEC2 --------->AGP1 <-----------TBP
acacaaaagtgatgccgaaaaaaaacaaagaccttgtgtgaattatatttttgcaagatgaagtgtgattattagatctatctagaaccatatatataga	15185000
----------->HVH21 --------->ALFIN1 ========================================================================= --------------->AGL15 --------->ALFIN1 ----------->RAV1(1) --------->ALFIN1 <---------------AGL15 <-----------HVH21 --------->ALFIN1
ccatcataaatctaatcatcattcattttgcaacaaatggcatgtgtgtgactgtgtgagagagtgtgagtgtgggattttccatgattaaaatttattt	15185100
<---------------AGL15 --------------->AGL15 ----------------->AG ----------------->AGL3 <-----------GT1 ----------->GT1 ------->TEIL -------- <-----------GT1 ----------->GT1 -------->ATHB1 ----------->RAV1(1) ==================================MADS_MADS ---------->DOF2 <-----------GT1 ----------
cattgttttttctcaccttcccaaatttattaatgttaattaagaaaaaaaaagtattattgtacgtgagagtatttgcgataccaacaaaaaaaaagtc	15185200
--->GT1 >DOF2 <-----------GT1 <-----------GT1 <-----------GT1 ---------->DOF2 <-----
aaaattattttgcaatacgtggactgtggaaattaataactattaatgtaattttcttgtcaaaataaccaaaatgaaagaaaacaagtatttattgttt	15185300
<---------AtLEC2 <-------TEIL --------------->AGL15 <-----------GT1 --------->AtLEC2 <--------HAHB4 ------GT1 <---------------AGL15 <-------TEIL ----------->GT1 <------NtERF2 <----------DOF2
ctattcttgtaacttaatattgcaacatgcatgattcatttatgtaatttgttattttatcattaggcgtcgaattcactaaaaaaaaactttcatttat	15185400
<-----------GT1 <----------DOF2 <-----------GT1 <------ZmHOX2a(1) <------ZmHOX2a(1)
ggcatattaatatatactttatactgtatttattatttaggactctaaataacaaaaaaaaaacattttgacttaggaccctagataactatttaaatga	15185500

AGI:	At5g38020.1
Description:	S-adenosyl-L-methionine:carboxyl methyltransferase family protein. similar to S-adenosyl-L-methionine:carboxyl methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G21950.1); similar to methyl transferase [Arabidopsis lyrata subsp. lyrata] (GB:AAP57211.1); contains InterPro domain SAM dependent carboxyl methyltransferase (InterPro:IPR005299)
Range:	from: 15182882	to: 15184959	Orientation: Reverse
Links:	TAIR MIPS

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