AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
==========================HOX2a_HOX2a ------>ZmHOX2a(1) <----------DOF2 ------>ZmHOX2a(2) <------ZmHOX2a(2) =================HOX2a_HOX2a ---------->ID1 ==================================HOX2a_HOX2a <------ZmHOX2a(1) ======================HOX2a_HOX2a <----------DOF2 =================================HOX2a_HOX2a <----------DOF2 <---------ALFIN1 -----GAMYB <------ZmHOX2a(2)=====================HOX2a_HOX2a ------>ZmHOX2a(2) ----------->GT1
ggttgaggaattcaagatcgagtttttctaagatcgcttcgcttgtcctttctttaacgccatcgatcgccactttctgtatcacaagtaatatatatta	15141500
<-------GAMYB <----------DOF2 ---------->DOF2 ------>ZmHOX2a(2) <------ZmHOX2a(1) ------>ZmHOX2a(2) ----------->GT1 ===========================HOX2a_HOX2a
tatatcttagctaatgtgatctcattattgctttaaatcacatcatatatagtaaaagaaacttagtatatgatcgttgtaacatacttgataggaagaa	15141600
------>NtERF2 --------->ALFIN1 <-----------GT1 <-------TEIL <-----------RAV1(1) ------->TEIL <---------ALFIN1 <------ZmHOX2a(1) <----------DOF2
ttgtggatgtaactgtgcggaccatcaccaccgttcattggaaacgattgaggaaatgttggcatctctctaggtctttcaactacgtccacaaatttca	15141700
----------->HVH21 ----------->GT1 <---- ---------->ID1 ----------->GT1 <------ <-----------RAV1(1) ---------->DOF2 <----------ID1 --------
tctctccgtatgttggtcgtcttaatttagataaagtaacacgtaacacattataaatatgcatgctatacgaaaaataaactgagactaaaactaaaag	15141800
---- ----- --------- ------ID1 <--------- ---------AtSPL8 <---------------AtSPL3 ----------->HVH21 -->DOF2 <-----------GT1 <------ZmHOX2a(2) <---------AtLEC2
tacaaatcaagaaaatcaccttatcgtagtacgatcaccctgaaaacccacaatgctgacaactggtgaagctatagcaatagctgatgcatgaccccaa	15141900
------>DOF2 ----->DOF2 <-- ------>AGL15 <-- --------AGL1 <------ZmHOX2a(1) ----------->GT1 <------------CBF
aaggcactcaacatagtttagttgcttagaagagaggaagaagtttgtattttcttacgaagagataattatttttgggtttcatgaattgggagaagaa	15142000
---------->DOF2 <------ZmHOX2a(1) ------>NtERF2 <----------ID1 <----------ID1 -------------AGL15 --------->ALFIN1 <---------PCF2 ----------->RAV1(1) --------DOF2 <------ZmHOX2a(1) --------->ALFIN1 ------->GAMYB
ctttataaggacaaaaagagagaggagtgcatgtggggataacaaatggggccaaacttaataaccaacattaaattttgtagtttatgttttctcgatt	15142100
----------->HVH21 <-------TEIL <------------CBF --------->AtLEC2 ------>ZmHOX2a(1) <-----------ARR10 --------
aaataaaacatatggagacatgcattctatgacatgagaccatccttattgcaagtctcttactacaaatcttaggtgtaattaatcataataatatgtg	15142200
--->GT1 --------->ALFIN1 ---------->DOF2
aatagtttagaagtgtttcttagataagagataaaagtaggtataagagcttcaaaccattacaaaaactcttagctataatttttttcaataaaacaat	15142300
<----------ID1 ---------->DOF2 <--- ----------->GT1 <--------P ----------->GT1 ----------->GT1
tcatcaaaatagttaaaagacaaaattaagtctaccattaaggttgctctgatcaagcttgtagtgttaatttttggtgggaactagtgttaatatattt	15142400

AGI:	At5g37970.1
Description:	S-adenosyl-L-methionine:carboxyl methyltransferase family protein. similar to S-adenosylmethionine-dependent methyltransferase [Arabidopsis thaliana] (TAIR:AT5G37990.1); similar to defense-related protein [Brassica carinata] (GB:AAK50345.1); contains InterPro domain SAM dependent carboxyl methyltransferase (InterPro:IPR005299)
Range:	from: 15140319	to: 15141914	Orientation: Reverse
Links:	TAIR MIPS

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