Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            --------->AHL20(2)     <---------------AGL15                           <---------AHL20(2)      --------->TOE2(3)                           --------->AHL20(2)      --------------->AGL15                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      ----------------->AGL3      ----------------->AG                      =============================================MADS_MADS                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     --------->ANAC58             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     --------->ANAC58             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  --------->TOE1(2)                --------------->AtSPL8            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                --------->PCF2               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)===================================================               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ATHB12--------->DEAR3(2)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-----------------AG--------->MYB46(3)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-----------GT1<---------ANAC46          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxx>smallRNA(s)<---------AHL20(2)<-----------------AGL1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxx>smallRNA(s) --------->AHL20(2)----------------->AGL1                           <x   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <xxx  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <--------  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            ------>ZmHOX2a(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->AHL20(2) ---------TOE2(2)   xxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <--------   cacaggtttaaaatgggctgggtacccaaataaataaaatccatatgggtttacctcattgggttatgggtacccacgagtttttttttaaatccttttt  14039900                            <---------ARR11(3)                                                     >>               <---------ANAC58                                                                    >>      --------->YAB1        --------->ARR11(3)                                                    ---  xxxxxxxxxxxxxxxx>smallRNA(i)                                                                   ---- =======MADS_MADS       ---------->DOF2                                                          ---- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     --------->AtMYB61       ---- xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <-----------GT1     --------->AHL20(2)--- --DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   ------>ZmHOX2a(1)     --------->MYB46(3)          <<<< -------AGL15  <---------ANAC58       <---------AHL20(2) xxxxxxxxxxxxxxxx>smallRNA(i)           <----   caagtgaatcaacattttcttgtcaaaaaagatttcgcatttttttctcctaaaccacgatttaacagtttaccaccaaaaaaaaaattcaacattttcc  14040000                                                     >>>>>>>>>E2Fc                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    --------->LBD16                                                    ------>NtERF2                                                   --------->ANAC58                                     --------->WOX13(1)                                 <----------ID1    --------->ANAC58                         <xxxxxxxxxxxxxxxxsmallRNA(i)>>>>>>>>>E2Fd                         --------->LBD16           <<<<<<<<<<E2Fa          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      --------->ANAC46        --------->ARR11(3)>>>>>>>>>E2Fc        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------ARR11(3)>>>>>>>>>E2Fd<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---------->DOF2         ------>NtERF2 <---------ATHB12    --------->ANAC46           --------->ANAC46 >>>>>>>E2Fc            <<<<<<<<<<E2Fa--------->ANAC58     --------->ANAC58           --------->ANAC58 >>>>>>>E2Fd            --------->ANAC58      <xxxxxxxxxxxxxxxxsmallRNA(i)            --------->ANAC58 --->NtERF2             --------->ANAC46     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <xxxxxxxxxxxxxxxxsmallRNA(i) ----->ANAC46           --------->ANAC58--------->YAB1     --------->ANAC58   --------->SPL7 ----->ANAC58           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------ANAC58 ----->ANAC58          <---------LBD16--------->ANAC58   ---------->DOF2  --------------->AtSPL3 ------>LBD16       <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------LBD16         --------------->AtSPL8 <<<<<<E2Fa        <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)<---------ANAC58 -----LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(i)<---------SPL7   cgccaaagaagacattcaacattttcccgccaaaaacgacaatcaacattttcccgccaaaacgcaattcaacattttcgtaccaaaaacgacattcaac  14040100                                                                                         --------->ANAC58                                                                                         --------->ANAC58                                                                                  >>>>>>>>>E2Fc                                                                                  >>>>>>>>>E2Fd                               >>>>>>>>>E2Fd                                     ------>NtERF2                               >>>>>>>>>E2Fc                                    --------->ANAC58                              --------->LBD16                                   --------->ANAC58                              ------>NtERF2                                     <<<<<<<<<<E2Fa                             --------->ANAC46                    <---------ICU4 --------->ANAC46  <--           --------->ANAC58  --------->ANAC58                    --------->ATHB12--------->LBD16 <---           --------->ANAC46  --------->ANAC58                   --------->ICU4 <---------LBD16  <----           --------->ANAC58  <<<<<<<<<<E2Fa                   --------->YAB1<xxxxxxxxxxxxxxxxsmallRNA(i)         ---------->DOF2    <---------LBD16              <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ------    --------->LBD16      <xxxxxxxxxxxxxxxxsmallRNA(i)   ------>NtERF2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    ------>NtERF2    <---------ICU4                     --------->LBD16    <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->ANAC46 <---------YAB1    --------->ANAC46 --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)  <---------LBD16 --------->YAB1    ---------->DOF2   <---------LBD16 <-----------GT1    --------->ANAC46   attttccgccaaaacgcaattcatcattttcccgccaaaaacgcgattcaacattttccgccaaaaatgatttcacattttcccgccaaaaacgcaattt  14040200                                                                                                xxxxx                                                                                       >>>>>>>>>E2Fc                                                                                       >>>>>>>>>E2Fd                                                                                      ------>NtERF2                                                                                      --------->LBD16                                                                                     --------->ANAC58                                                                                     <<<<<<<<<<E2Fa                                                                                     --------->ANAC58                                                                                     --------->ANAC46                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <---------TOE2(3)   <----       --------->ANAC58                     <---------ARR11(3)             xxxxxxxxxxxxxxxx>smallRNA(s)       --------->ANAC58                 ---------->DOF2                    <-----------GT1      -----       --------->ANAC46            --------->LBD16                        <-----------GT1      ------ -------TOE2(3) --------->ANAC46   ------>NtERF2                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------GT1    --------->ANAC58  --------->ANAC46    *TSS          ------------>CBF<---------LBD16 -------GT1     --------->ANAC58 <---------LBD16      <---------AHL20(2) --------->AHL20(2) --------- --->AHL20(2) <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   aacattttctcgccaaaaacgacattcaacgtttttccgccaaaaagatttcatattttttggtcaaaaacacaatttaacattttcccgccaaaaatga  14040300                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                --------->ANAC46                                         >>>>>>>>>E2Fd                                         >>>>>>>>>E2Fc                                        --------->LBD16                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                        ------>NtERF2                 --------->ANAC58                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                     >>>>>>                                       --------->ANAC46               --------->ANAC58         >>>>>>                                   <xxxxxxxxxxxxxxxxsmallRNA(i)   ------>NtERF2               ------>NtERF2                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->LBD16             <<<<<<<<                      ------------>CBF --------->ANAC58      --------->ARR14(2)              --------                     --------->ANAC58  --------->ANAC58      <---------ARR14(2)              --------             ------>NtERF2        <xxxxxxxxxxxxxxxxsmallRNA(i) <---------LBD16   ----------->HVH21             --------->LBD16  <---------TOE2(3) --------->ANAC58 ------>NtERF2--------->ARR14(2)            --------->ANAC46 <-----------GT1    --------->ANAC58<---------RAP2.6(2)          -------- xxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxx>smallRNA(s)   <---------GLK1(1) <---------ARR14(2) -----ARR11(3)       --------->ANAC58  <<<<<<<<<<E2Fa     <---------ICU4 ---------->DOF2    <-------- ---->ARR11(3)       --------->ANAC46 <---------LBD16<xxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <-----------GT1 --->YAB1  <---------LBD16  <-----------GT1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<-----------GT1 >YAB1   <-----------GT1   --------->AHL20(2) <xxxxxxxxxxxxxxxxsmallRNA(i)   <------ZmHOX2a(1)-------   tattcaacatttttccgccaaaaacgcaatttaacattttcccgccaaaaacgacattcaacatttccggccaagaaaaggatttgacatttttcccgcc  14040400                                                  >>>>>>>>>E2Fd                                                  >>>>>>>>>E2Fc                                                 --------->LBD16                                                 ------>NtERF2                                                --------->ANAC46                                                <<<<<<<<<<E2Fa                                            <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->ANAC46                         <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->ANAC58                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ANAC58                     <---------TOE2(3) --------->ANAC46 >>>E2Fc                              xxxxxxxxxxxxxxxx>smallRNA(s)<---------TOE2(3) >>>E2Fd                              <-----------GT1    --------->ANAC58 <<E2Fa              --------->LBD16 <-----------GT1     --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ->ANAC46        <-----------GT1    --------->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ---- ->ANAC58  <---------TOE2(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <-----------GT1  --------->ANAC55(2) ->ANAC58 <-----------GT1     --------->ANAC58  --------->ANAC58 <-----------GT1    <---------AHL20(1) -LBD16 --------->AHL20(2)    --------->ANAC46  --------->ANAC58<-----------GT1     --------->AHL20(1) -->LBD16<-----------GT1      --------->ANAC58 <---------LBD16 --------->AHL20(2)  --------->AHL20(2)   aaaaacgcaatttaacatttttccgtcaaaaaacgcaatttaacattttcccgccaaaaacgcaatttaacatttttcccatcaaatatatatgtaatac  14040500                    --------->AHL20(1)                    <---------AHL20(1)                    <---------ARR11(3)                    --------->ARR11(3)                    <---------AHL20(2)                    --------->AHL20(2)                   --------->AHL20(2)               --------->AHL20(2)              <---------AHL20(2)             <---------AHL20(2)         <---------YAB1         <---------AHL20(2)                             --------->YAB1         --------->AHL20(2)                            <---------AHL20(2)        --------->AHL20(2)   --------->ANAC58         --------->AHL20(2)        <---------AHL20(1)   --------->ANAC46       --------------->AGL15     --------->TOE2(3)        --------->AHL20(1)   --------->ANAC58     <-------TEIL               --------->YAB1    ------       --------->YAB1    <---------AHL20(2)  ----------->RAV1(1)         --------->AHL20(2)    xxxxxx   --------->AHL20(2)    --------->YAB1    <-------TEIL<---------YAB1    <---------AHL20(2)    ------   <---------AHL20(2)<---------AHL20(2)   --------->CCA1(2)        <-----------GT1            <------ ------->GT1 --------->AHL20(2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               -------   agaaaataaatataatttaaaatatatttataagcaaaatatagatacaacatacatataatagtatattaacaattaaacataaattctaagaaaatga  14040600                       xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <xxxxxxxxxxxxxxxxsmallRNA(s)                      <---------MYB52(1)                     <xxxxxxxxxxxxxxxxsmallRNA(s)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <xxxxxxxxxxxxxxxxsmallRNA(i)                   <xxxxxxxxxxxxxxxxsmallRNA(i)                   <xxxxxxxxxxxxxxxxsmallRNA(s)                  xxxxxxxxxxxxxxxx>smallRNA(s)                  <---------LBD16                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxx>smallRNA(i)                  <xxxxxxxxxxxxxxxxsmallRNA(s)                 <---------ALFIN1      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxxxxxxxxxxxxxxxsmallRNA(i)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                --------->MYB46(3)    <---------ICU4                <xxxxxxxxxxxxxxxxsmallRNA(i)                xxxxxxxxxxxxxxxx>smallRNA(s)                                                      <xx               xxxxxxxxxxxxxxxx>smallRNA(i)                                                       xxx               --------->DEAR3(2)     --------->YAB1                                              <xx               xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                <xxx              --------->PCF2         <---------ATHB12                                            <xxx              xxxxxxxxxxxxxxxx>smallRNA(s)                                                      <----             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                              <----           <------MYB83<--------P  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                         <----           <---------ANAC58        --------->WOX13(1)                                           xxxxx           <---------ANAC58       --------->MYB46(3)                                           <xxxxx           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               xxxxxx           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            ------>MYB46(1)                    ------           <------MYB46(1)<xxxxxxxxxxxxxxxxsmallRNA(s)      ------>MYB83                      xxxxxxx           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          --------->MYB46(3)                 xxxxxxxx     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <xxxxxxxx ----->GT1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          xxxxxxxxxxxxxxxx>smallRNA(i)       <xxxxxxxx xxxxxxxxxxxxxxxxx>smallRNA(se3) <---------KAN4(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     xxxxxxxxx --->YAB1 --------->MYB59<xxxxxxxxxxxxxxxxsmallRNA(s)<----------DOF2                      <---------TOE1(3) ---YAB1  <---------MYB46(3)<---------LBD16     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------TOE2(3) ---->GT1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<-----------GT1                            ---------->DOF2   taaaaatcaagttgggtacccacgggtagtctcggaacaatcatgttttttcaggctttacccactaaatcaaaaacccatctaggttttttaaagttgg  14040700         <---------ANAC58         <---------ANAC46       xxxxxxxxxxxxxxxx>smallRNA(i)      <---------MYB46(3)      --------->MYB55(2)      <---------DEAR3(1)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <-----------RAV1(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------AtMYB61 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               --- xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <-- xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                     <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 <---------AHL20(2) xxxxxxxxxxxxxxxxxsmallRNA(le3)                        --------->ANAC46            --------->AHL20(2) xxxxxxxxxxxxxxxxxsmallRNA(si3)                      <---------ALFIN1              --------->AHL20(1) --MYB83 <---------ANAC58                          ------>MYB46(1)          --------->ANAC55(2)   <-- --MYB46(1)<------NtERF2                           ------>MYB83             --------->ANAC58      --- -----ANAC46       <---------AHL20(2)             --------->MYB55(1)        <---------ANAC55(2)------ xxxxxxxxxxxxxxxxxx>smallRNA(le3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)      <---------AHL20(1) xxxxxxxxxxxxxxxxxsmallRNA(le3)          <----------DOF2   <---------ARR11(3)     --------->AHL20(2) xxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->ZAT18 --------->AtMYB61      --------->ANAC46   <----- --->MYB59 ----------->GT1          --------->ALFIN1--------->MYB46(3)      --------->ANAC58   ------ xxxxxxxxxxxxxxx>smallRNA(le3)   <------NtERF2    --------->ANAC46         <---------LBD16     <----- xxxxxxxxxxxxxxx>smallRNA(le3) <---------DEAR3(1)--------->MYB46(3)       <-----------GT1 <---------YAB1 xxxxxxxxxxxxxxsmallRNA(le3)  --------->ALFIN1   <---------MYB55(2)       --------->MYB52(1)--------- xxxxxxxxxxxxxxsmallRNA(fl3) <-----------HVH21 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->AHL20(2) xxxxxxxxxxx>smallRNA(le3)<-----------RAV1(2) <-----------GT1        --------->AHL20(2)<---------AHL20(2)   gtttttggtgggcgggtttattttaagttcaggtcggggtgggcttttttacccaccacaacatctctagtttaaattacggaattttatttattaataa  14040800  Previous    Next  AGI:  At5g35880.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32680.1) Range:  from: 14040096    to: 14040254    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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