AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<-------GAMYB ------>ZmHOX2a(2) ----------->GT1 =============HOX2a_HOX2a ---------->DOF2 ------>ZmHOX2a(1) ----------->HVH21 ----------->RAV1(2) ---------->DOF2
tttaatgcaatagtttagctgacagaaaggtgaatgtctaggcattcgatggtttcctgggatcgttgaagattctcttctgaagaagttggcaaagtat	8430400
----------->GT1 ------>NtERF2 ------->GAMYB <----------DOF2 ------>NtERF2 <---------------AtSPL3 <-----------GT1 <--
caaatgttgactctgccgctacgataagataacggtacgggaatatttctccctaatagctaacgaaaataacaatcactattttactttttgttgattt	8430500
<-----------GT1 <------ZmHOX2a(1) ---------->ID1 ---------->DOF2 <----- ---------GT1 ----------->GT1 <-----------GT1 <-----------GT1 ----------->GT1
tttctaatttctactatacaaatttgattaccaggaaaatattttatttttattttttatcatttgtttttttttttaccaaagatatatttggttactt	8430600
------>ZmHOX2a(2) <---------AGP1 ----------->RAV1(2) --- -----DOF2 <-----------HVH21 ----------->GT1 --------
tattcaactcaattgtcaaggaacctggatctagtgtaaattctcttacatgagacatcacttcattagttctataataatataataaaccgatgaaaag	8430700
<---------------AtSPL3 <-----------HVH21 ------>ALFIN1 <------------CBF *TSS -->DOF2 ---------->DOF2 <------NtERF2 ------>ZmHOX2a(1) <------------CBF -------
atggggaagtaaggcaaagaattgccttgtcggagaggccagtgtccttagagtaatgctaaaccctaacatattgtcttggggcttgaagctctctaaa	8430800
------->TEIL --->DOF2 <----------DOF2 ------>ZmHOX2a(1) ----------->RAV1(2)
gcaacttcaccgcttaaacattgcatccttctctccctctacattttatttgttataaaccctggtccatggacttcccagcaaatccatatttcagaaa	8430900
=====================HOX2a_HOX2a <---- <------ZmHOX2a(2) <---------ALFIN1 ----------------->AGL1 ------>ZmHOX2a(1) ------>ZmHOX2a(1)
tcttaaacgtttatacgataatgggaagatcaccaatggttcctatggctgttcttgtttatgtttctctactgttctctgtttcttattcctccacgtt	8431000
<----- ------- <----------DOF2 <-----------RAV1(2) ------->GAMYB ==================== <------------AtMYB77 <-------TEIL --------- ---TEIL <-----------GT1 ------>NtERF2 <---------ALFIN1 <----------
cgtcatcacaaataactgtccctttactatatggcctggaactcttgcaggctctggcacccagccactacccaccacagggttcaggcttgatgtggga	8431100
<<<<<<<<<<E2Fa <<<<<<<<<<E2Fd <<<<<<<<<<E2Ff =======================MYC_MYB <<<<<<<<<<E2Fb <-------GAMYB <<<<<<<<<<E2Fc ----PCF2 <<<<<<<<<<E2Fe ---->HVH21 ----------->GT1 =RAV --------->TGA1a <----------DOF2 <------NtERF2 >ALFIN1 --------->O2 <-----------HVH21 <------NtERF2 ------>NtERF2 -RAV1(1) <---------ALFIN1 <-----------RAV1(2)<------ZmHOX2a(1) ------->GAMYB
cagtctgttagaattcccacggctctaggctggtcaggtcgtatttgggctaggactggctgcaactttgatgctaacggcgcgggaaaatgtatgactg	8431200
---------->DOF2 <------NtERF2 ------>NtERF2 ------>NtERF2 ----------->HVH21 ----------->HVH21 <------NtERF2 --------->ALFIN1 ------>NtERF2 <------ZmHOX2a(2) ------>NtERF2 --------->ALFIN1 <------NtERF2 <----------DOF2 <-----------HVH21
gagactgcggcggaaagctggagtgtgctggtaatggcgctgctccgccgacatctcttttcgagatcacactcggtcacggttctgatgacaaagattt	8431300

AGI:	At5g24620.1
Description:	thaumatin-like protein, putative. similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT4G36010.2); similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT4G36010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48544.1); contains InterPro domain Thaumatin, pathogenesis-related (InterPro:IPR001938)
Range:	from: 8430771	to: 8432417	Orientation: Forward
Links:	TAIR MIPS

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