AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<-------TEIL ---------->DOF2 ------>ZmHOX2a(1) ---------->DOF2 ----------->GT1 ------->TEIL --
taaataaatcctaaaactcaaactaataaaaaaagtatttttttgtgtagtattaaaagatgcagaatccgaaataatgtattttattgtagaagtgatt	5907400
----- <----------DOF2 <----------DOF2 -------->DOF2 -------->ATHB1 ---------->DOF2 ----------->HVH21
caaaagaccttatctcgtagtcacttgtagcattattggtttaaggttaaagaaaacatttaaaactctgtatacatcatacatgacatctttacaaatt	5907500
----------->RAV1(1) <-------TEIL ----------->GT1 <----------ID1 <-----------GT1 <-----------GT1 <-------TEIL ---------->DOF2 ------>GT1 <----------DOF2 <-----------GT1 ---------->DOF2 ------>NtERF2
gcaaaatatacatttttaatcagctactctattcttaaattcctttaattaacgaggttatacagttcgatacgtttaagcaacaaaaagttcgatgcca	5907600
---------->ID1 ------>NtERF2 <-------TEIL ----------- <--------ATHB1 <-----------RAV1(1) ----------->GT1 ---------->DOF2
ctaataatttaatttttgttctcttcttatcttatagattgttgcagcctgcaggcttgcagcataacgagttacataactatatacaaaggcccaatag	5907700
---------->DOF2 ----------->ARR10 ---------->DOF2 <-----------RAV1(2) - ->CBF ------------>CBF <------ZmHOX2a(1) <-----------ARR10 *TSS <----------DOF2
acacctcaaaggcccaataaaaaagcccaggaaaaacgaaaacgaagatatgaagttcttctctaatccgaagcaagaggctcaaactcactttcacttg	5907800
<-------- --------- ---------- <--------- ---------- <--------- ----------- <----------DOF2 <---------- ------>ZmHOX2a(2) <---------- <------ZmHOX2a(2) ----------- ==============================HOX2a_HOX2a <----------DOF2 ----------- <------ZmHOX2a(1) <------NtERF2 <-----------HVH21 <---------- =============================HOX2a_HOX2a <-------GAMYB ------>NtERF2 ----------- --------->DOF2 <-----------HVH21 <-----------TGA1 <-----------ARR10 <----------
cacaaagataaggaaaccatgtctgtgtcagcgatctttggtaccggaatcgtcaccgttgctgcttctccggttctccgccaatttcaagttccaaaat	5907900
<------ZmHOX2a(1) -------AGL15 ------>AGL15 ----->AGL15 ------AGL15 ------->AGL1 --------AGL1 ------>AG -------AGL3 -------AGL2 ------>AGL3 ------>AGL2 -------AGL1 ----------->RAV1(1) <------NtERF2 ------>AGL1 --------->ALFIN1 ------>NtERF2 <------ZmHOX2a(1) -------AG <------ZmHOX2a(1) --------->ALFIN1 ------>NtERF2 ------>NtERF2
tgggtaatggaggaggattagggatggtgatagagtgttcgtcgaggccacagaagaaatcgacggctcatcacaggaagacgaggccgaagaagactca	5908000
---- -------- ------>ZmHOX2a(1) --------->ABI4(2) ------>ZmHOX2a(1) <------NtERF2 <---------TGA1a <-----------GT1 ------>ZmHOX2a(1)------------------>SPL14 --------->ALFIN1 ---------->DOF2 <---------ALFIN1 ------>NtERF2 ----------->HVH21 <-
gccttgggacattaagagaaagcctactgtttacgctcctcttcctcctcttccggcggaatggagtccgttcactctcgcttctgacgacggtggtgct	5908100
================================RAV <-----------RAV1(1) <--------P -->NtERF2 ------>NtERF2 ->ALFIN1 ----------->ARR10 <------NtERF2 <-----------RAV1(1) --------ALFIN1 <-----------RAV1(2) <-------GAMYB <----------DOF2
gccactgctgcgggagatttggtttcaggcgctgcctagttggtatgagttatctgctgatttggttgtaatctagtttgagaacttttgttgttgttta	5908200
<-----------RAV1(1) <-------GAMYB <-----------RAV1(1) ---------->DOF2 ---
ctgtgttttcagttttctgatgtttgttgttgggtttgtttgtgtttgattggtgaatgaatggaccaaatttgcgatttataaagcttcaacctttctc	5908300

AGI:	At5g17870.1
Description:	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6). Identical to Plastid-specific 50S ribosomal protein 6, chloroplast precursor (PSRP6) [Arabidopsis Thaliana] (GB:Q9FKP0); similar to unknown [Populus trichocarpa] (GB:ABK95296.1); contains domain PD069352 (PD069352)
Range:	from: 5907777	to: 5908337	Orientation: Forward
Links:	TAIR MIPS

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