Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->ATHB12                                     <---------WOX13(1)                                   --------->ATHB12                                 <---------WOX13(1)     ------->GAMYB             --------->ATHB12   <---------ZAT2           ---------->DOF2   --------->At4g35610   --------->TOE2(3)                 --------->MYB52(1)       <---------HSFB2a(2)   --------->ZAT2        --------->TOE1(3)           <------ZmHOX2a(1)----------->GT1         -------   <---------At4g35610   <----------DOF2          <---------LBD16     <---------ZAT6--------->HSFB2a(2)   ttctcaactgcgatagaaatatacaaactttaaagattgattgatagcattctcaggaaaataacagagatagagttaaaagacttccaaaacatctaaa  4311700                                                 --------->WOX13(1)             <---------ANAC55(2)                                               <---------YAB1         ------>ZmHOX2a(2) --------->ANAC58     --------->ANAC58    <---------ZAT6            --------->ARR14(2) --------->GLK1(2) --------->ANAC58     --------->ANAC58--------->ZAT14          <-------GAMYB  ------>ZmHOX2a(2) --->DOF2             --------->ANAC46<---------ZAT14   <---------ATHB12    --------->ARR11(3)   gccgagcaatgtaagcgagaaaacacgataatccccattctatactgttatcaatccaattaggcgattggatcgactgatctcgtaagaatcgactccg  4311800                                                                                                  <--                    --------->ARR14(1)                                                      <--------                    --------->CCA1(2)                                               --------->ARR14(2)                   --------->ARR11(1)                                   ------->GAMYB      <---------At5g28300                   <---------ARR14(2)                              ------>ZmHOX2a(2)--------->GLK1(2)                   <---------GLK1(2)                               ================HOX2a_HOX2a <-----                   --------->ARR14(2)                 --------->DAG2 --------->MYB52(1)  <---------MYB52(1)                 ----------->ARR10            <---------At4g35610<---------AGP1     <---------ARR14(2)               ---------->DOF2             <---------At5g28300  <---------CCA1(2)  <---------GLK1(2)-   <---------AHL20(2)          <---------TOE2(3)     ---------->DOF2----------->HVH21   <-----------HVH21   --------->AHL20(2)<-------TEIL         <-----------GT1   <---------ANAC46<------ZmHOX2a(1) <------   aacaaaaaattggactgaaaagattcgatttttaagaatgcgaattaccgctgggaaaagcgacttggatctaacggaggagacagaatctgttacggcg  4311900                        ------>ZmHOX2a(2)                       --------->At4g35610                 ------>ZmHOX2a(2)                <------ZmHOX2a(2)               --------->ARR11(3)               --------->ARR14(2)               <---------ARR11(3)              <---------GLK1(1)                                                                ------            ===================HOX2a_HOX2a                   --------->ATHB12                  <----- -------AtMYB61<---------ARR14(2)                           <---------YAB1                     <----- -ANAC46    <------ZmHOX2a(1)                           <---------ARR11(3)                     ------ ----DEAR3(1) --------->GLK1(1)--------->ATHB12         <---------GLK1(2)                    <------- -------->ARR11(3)     <---------At4g35610  <-----------RAV1(1)<---------WOX13(1)   ---------->DOF2 < ---------------WRI1  --------->ARR14(2)--------->ICU4  --------->ARR11(3)   <-----------------------TaNAC69(2)   atggtcttgaagaaggagatccctgatctgaaacgattagccatttttgttgcagatagattttgattggaaccctagaaatgtgcaaaagtcgctcagc  4312000                                                                                              <------     --------->ETT(2)                                        <---------ZAT14                 <------- --->ZAT2                      --------->At4g35610   <------------CBF              <------------CBF ----At4g35610                 <---------At4g35610 --------->ZAT18                --------->ATHB12 ----ZAT2                    <---------WRKY12      --------->ZAT14               --------->AHL20(1) --->At4g35610        ------->TEIL  ----------->GT1<---------ZAT14               --------->AHL20(2) ----RAV1(2)---------->DOF2<-----------HVH21       *TSS     <----------DOF2      <---------AHL20(1) ----------DOF2  --------->CCA1(2)<------ZmHOX2a(1)<---------ZAT18<---------ZAT18<---------AHL20(2)   tgctttgtcgagagcaaagagatgaaactggtcagaggaagaaaataacttagtgcattgggcttcactgggctcatacttattttattgggcttattac  4312100                            <---------AHL20(2)                                                 ------                         ----------->GT1                  <-----------GT1               ----------->GT1                      --------->YAB1                 <---------ZAT6                     <---------ANAC55(2) -----GT1            <---------YAB1        <---------TOE1(3)                            --------->ANAC55(2) --YAB1           <---------AHL20(2)      <-----------RAV1(2)                     <---------TOE2(3)   tacctgtagatagtggcaaatttatgatagttaatttgttttgctcaggtttttagtgttttaccaagtttcaaatgttatagtgaggttatgtaataca  4312200                                                                              --------->AHL20(1)                                                                              <---------ARR11(3)                                                                              --------->ARR11(3)                                                                             <---------AHL20(2)                                                                           --------->AHL20(2)                                         <---------YAB1                    <---------AHL20(2)                              ------>ZmHOX2a(2)                          --------->AHL20(2)                             <------ZmHOX2a(2)                           <---------AHL20(2)                            --------->AGP1                             --------->AHL20(2)                            --------->ARR14(3)                         <---------AHL20(2)                            <---------ARR14(3)                     <---------AHL20(2)                            --------->ARR14(2)        <---------YAB1 <---------AHL20(2)                            <---------ARR14(2)      -------->ATHB1 --------->AHL20(2)                            <---------ARR11(3)      --------->ATHB51 --------->AHL20(2)                            --------->ARR11(3)     <---------YAB1--------->AHL20(2)         --------- --->ANAC46                 <---------AGP1 <---------AHL20(2)    <---------AHL20(2)       <----------   caacttaactcgtttttttgttgtaaacaagatcttgtagattattattttgtattattgttgatatatatatatatatatatattcaaatttaactgta  4312300                                                                                     --------->HSFB2a(2)                                                                                     <---------HSFB2a(2)                                                                               <---------TOE2(3)                                                                          <---------ICU4                                                                          --------->ATHB12                                                                          --------->ATHB51                                                                          <--------ATHB1                         <---------AHL20(2)                               -------->HAHB4                     <---------YAB1                                      <---------AHL20(2)                     --------->ICU4                                      --------->AHL20(2)                  <---------YAB1                                         <---------YAB1                 --------->ARR11(3)                       <-----------GT1<---------ATHB51--------->AHL20(2)                 <---------ARR11(3)              --------->YAB1          --------->ICU4  <---------AHL20(2)                --------->CCA1(1)               <---------ATHB51        <---------AHL20(1) >ZAT6          --------->RVE1(1)             --------->YAB1<-----------GT1 <---------WOX13(1) -GT1 <---------ARR14(2)<---------YAB1  --------->ZAT6------->TEIL      --------->AHL20(2)          <   tatatgtgtatatgaaaaatatcatttttaatgtgtatttgaactctacaataatgtatttttctctatttcaaaataattgatgttctaaaaaaatact  4312400                                                                                                   <-                                                                                               xxxxxx                                                                                              xxxxxxx                                                                                              <xxxxxx                                                                                              xxxxxxx                                                                                              -------                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             <xxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                          --------->AHL20(2)                                                                                          <xxxxxxxxxx                                                                                          <---------AHL20(2)                                                                                          xxxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                        <-----------GT1 xxxxxxxxxxxxx                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                 <---------AHL20(2)    xxxxxxxxxxxxxx                                                             <---------DAG2--------->TOE1(3)<xxxxxxxx                                                       --------------->AtSPL3          xxxxxxxxxxxxxx                                                       --------------->AtSPL8          xxxxxxxxxxxxxx                                                       <---------------AtSPL8          <xxxxxxxxxxxxx                                            xxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxx                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <xxxxxxxxxxxxxx                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxx                <---------ARR11(3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->TOE2(3)xxxxxxxxx              <---------TOE2(3)<-----------GT1<---------AHL20(2) --------->AHL20(2)  <xxxxxxxxxxxxxxx <<<<<<<<<GT-3b --------->ARR11(3)     ------>ZmHOX2a(1)     <----------DOF2         <xxxxxxxxxxxxxxx   atttttcttacgaattaagatgttgttctcaattttctatcctactatattatttgggaagtactttttaaatgtaaccttaatttttgtaagtaattac  4312500                  <---------AHL20(2)                 <---------AHL20(2)                 --------->AHL20(1)                 <---------AHL20(1)           --------->YAB1          --------->AHL20(2)    --------->ANAC58    --------->ANAC58 --------TOE2(2) --------->AHL20(2) xxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxx>smallRNA(fl3) -->AHL20(2)  --------->YAB1 xxxxxxxx>smallRNA(s) xxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxsmallRNA(si3)                                                                 <---------AHL20(2) xxxxxxxxxxxxsmallRNA(le3)                                                                --------->AHL20(2) xxxxxxxxxx>smallRNA(le3)                                                                --------->AHL20(1) xxxxxxxxsmallRNA(le3)                                                                   <---------AHL20(2) xxxxxxxxx>smallRNA(si3)                       <----------DOF2                           <---------AHL20(1) xxxxxxxxxx>smallRNA(fl3)                 <-----------GT1                                --------->AHL20(2) xxxxxxxxxxxsmallRNA(se3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->AHL20(1) xxxxxxxxxxxsmallRNA(si3)            --------->AHL20(2)                              <---------AHL20(2) xxxxxxxxxx>smallRNA(si3)            <---------AHL20(2)                              <---------AHL20(1) xxxxxxxxxx>smallRNA(se3)           --------->AHL20(1)                               --------->AHL20(2) xxxxxxxxx>smallRNA(si3)            <---------AHL20(1)                              --------->AHL20(2) xxxxxxxxxxxxxxxsmallRNA(fl3)       <---------AHL20(2)                          <---------AHL20(1) xxxxxxxxx>smallRNA(le3)            --------->AHL20(2)                          <---------AHL20(2) xxxxxxxxx>smallRNA(fl3)           --------->AHL20(2)           --------->AHL20(2)  <---------AHL20(2) xxxxxxxxxxsmallRNA(se3)           <---------AHL20(2)         ----------->GT1   --------->AHL20(2) xxxxxxxxsmallRNA(se3)          --------->AHL20(1)           ----------->GT1    --------->AHL20(1) xxxxxxxxsmallRNA(si3)          --------->AHL20(2)          --------->DAG2  <---------AHL20(2)     -- xxxxxxxxsmallRNA(si3)          <---------AHL20(2)   <------ZmHOX2a(1)      --------->AHL20(2) ------ xxxxxxxxxxxxxx>smallRNA(le3)   <---------AHL20(1) <---------TOE1(3)       --------->AHL20(2)  <----- xxxxxxxxsmallRNA(le3)         --------->AHL20(2)  <---------TOE2(3)       <---------AHL20(2) <------ xxxxxxxxsmallRNA(se3)   ---------->DOF2<---------AHL20(2) ---------->DOF2 <---------AHL20(1) -------   ataggtatgccattaaaaataaaattttaaagaataaattaatttatctctttaaggattaaaaagttaaatactaatttaattaattaaatttaattta  4312600  Previous    Next  AGI:  At5g13450.1    Description:  ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative. Identical to ATP synthase subunit O, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q96251;GB:Q93W68;GB:Q9LYR1); similar to ATP synthase delta chain, chloroplast, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative [Arabidopsis thaliana] (TAIR:AT4G09650.1); similar to hydrogen-transporting ATP synthase [Brassica rapa] (GB:ABL97953.1); contains InterPro domain ATPase, F1 complex, OSCP/delta subunit; (InterPro:IPR000711) Range:  from: 4310317    to: 4312051    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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