AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<-----------GT1 <-----------GT1 ------ ----------->GT1 >>>>>>>>>RAP2.2 ---------->DOF2 <---------ALFIN1
gcctagaattggttaaattttactcatcaatctaaaaactaaattgaacaagaaaaactaaagacactattttacatgtgatcacaccccgaagaaatag	1238700
<-----------RAV1(1) < ----------->GT1 <---------------AtSPL8 <----- ----->GT1 --------------->AtSPL8 ----------->GT1
ttatacagagtaaaaaaacgggataatgagtggaacaaacaaatatttgtatagaaattgtctaaaattgtacattttttgttggaaattgttacacaca	1238800
<---------------AGL15 --------------->AGL15 <-----------------AGL1 <----------DOF2 ----------------->AG ----------DOF2 ----------------->AGL1 ----ALFIN1 ----------->GT1 --------->ALFIN1 -
ctctttctctctctttatctgattgtaatgtgattagtttgccaagttgggcaaatggtagaagagagacaataacagaagtactaaaatttaagaggct	1238900
<----------DOF2 ------->TEIL --------------->AtSPL8 <---------------AtSPL3 <------ZmHOX2a(1) <---------------AtSPL8 <----------ID1 <---------ALFIN1 --------->ALFIN1 ------>ZmHOX2a(1) --------->DOF2 <-----------GT1 --------->ALFIN1 ------>ZmHOX2a(1)
acaaaaggacaagtccaaacatattcacacactctctcatatatttttgttctatatgtgtggtgtacctctttgactcctctcttcctaaatcactcac	1239000
------>ZmHOX2a(2) ================HOX2a_HOX2a <------ZmHOX2a(2) =================================HOX2a_HOX2a ==================================HOX2a_HOX2a ------>ZmHOX2a(1) =================HOX2a_HOX2a <---------ALFIN1 <-----------ARR10 <---------ALFIN1 <---------ALFIN1 <---------AGP1 ------->TEIL <---------ALFIN1 ----------->RAV1(1) ----------->TBP ------>ZmHOX2a(1)
tatttatgtatctatctctccacacatctctctccatcccacacacatcttcctcttaacacattactatatatgcggatctctcatccttaacttattc	1239100
<------ZmHOX2a(2) ------>ZmHOX2a(2) ------>ZmHOX2a(1) =============================HOX2a_HOX2a ================HOX2a_HOX2a ----------->RAV1(2) ===================HOX2a_HOX2a ------>ZmHOX2a(2) ========================HOX2a_HOX2a =====================================HOX2a_HOX2a ------>ZmHOX2a(1)------>ZmHOX2a(2) =======================HOX2a_HOX2a =============================RAV <----------DOF2 ---------->DOF2 *TSS ----------->RAV1(1)===============HOX2a_HOX2a ------->TEIL ----------->RAV1(1)
ataatcaacaacacaaatcctcttctcctgatccgatcttcatctttgatcttgaatctcttgctaatggaagcgttcgaagaggccacaaaggagcaat	1239200
------>NtERF2 ---------->DOF2 ------>ZmHOX2a(1) --------------->AGL15 <---------------AGL15 ----------------->AGL2 ----------------->AGL1 <----------DOF2 -------->P ------>ZmHOX2a(2) ----------->HVH21 ------>ZmHOX2a(1) ------>ZmHOX2a(1)
ctttgatccttaaagggaagcggacgaagcgacaacgtccacaatctcctattcctttctctatctcccctcctatagtttctaccccggaaaacaacat	1239300
--------------->AGL15 <------ZmHOX2a(1)----------->RAV1(1) <------ZmHOX2a(1) ------->GAMYB ------>ZmHOX2a(2) <----------DOF2 ----------------->AGL3 ================================HOX2a_HOX2a ---------->DOF2 ===================HOX2a_HOX2a -------->P <------ZmHOX2a(1)
ggaagaagaatacactgatcttgattccaaggacaatgctttaggaaatgatgagggcaaccacaaaaaggatggtgtgatcacatcttcatcttcatca	1239400
<------ZmHOX2a(1) <------NtERF2 <------ZmHOX2a(2) ------>ZmHOX2a(1) ----------->RAV1(1) <------ZmHOX2a(1)
gcctcttggtcctcccaaaacaatcacacattgaaggcagcagaagacgaggaagatcaagacatagccaattgtttgatactccttgcccaaggacact	1239500
---------->DOF2 <------ZmHOX2a(1) <---------ALFIN1 <-----------RAV1(2) <---------ALFIN1 -------->P ----------->RAV1(1) <-----------GT1 -------
ctcttccccacaacaatcaccacttaccaaacagcaacaacaacaacacgtatagatttaccagcaggaggtttctagaaacttcttcttctaacagtgg	1239600

AGI:	At5g04390.1
Description:	zinc finger (C2H2 type) family protein. similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT3G10470.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69085.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)
Range:	from: 1239101	to: 1240518	Orientation: Forward
Links:	TAIR MIPS

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