AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<-------TEIL ------->TEIL -ZmHOX2a(1) <---------------AtSPL8 ----ID1 <-------TEIL
caaaaaaacattgatttttaaaaaatgttttaaaaacgtttactgtatgatttcatttagttggatgaaatcaattggtacatgtacgtagaaattagca	1234500
----------->RAV1(1) <----------DOF2 ---------->DOF2 ---------->DOF2 <----------DOF2 <----------ID1 ---------->DOF2 <-------TEIL
attcccttttttctttcagataatagatttatatgtgaatgatgaggcatggaccatatgagacaaaaagaagatataaagaacgaaagacaacatacat	1234600
----------->HVH21 <---------O2 ======================bZIP_DOF <----------DOF2 ============================bZIP_DOF <----------DOF2 <---------TGA1a <-------TEIL --
ttgttttccttttcctttgccatcagtcgtgacctaaaccacatattattttggtcccaaataagacttcaaattcataaatgatgaagtttccagatgt	1234700
----------->RAV1(1) ------>NtERF2 ------ --------->AtLEC2 <------- ---------->CBF <-------TEIL ------>ZmHOX2a(1) ------------>CBF ---------->DOF2
atacaatgaaggcttcgaagtgcatgcagcctccttcaacataaatcagtttaatttattttcttgaaatataacaatggttcaagaaataaaagtcacc	1234800
------>ZmHOX2a(1) ------>CBF ---------->DOF2 ----GT1 ------------>CBF ------->TEIL ------->TEIL
aatccttactcaaggttttttgttctctccaattcatcaacaaagcatatagaatattatacgaatgtgtattacatagatgtatgtctctgtgtttaat	1234900
<-----------RAV1(1) ------>ZmHOX2a(1) <----------DOF2 <-----------------AGL3 ---------->DOF2 --------->ALFIN1 =========================================== --------->ALFIN1 ---------->DOF2 <-----------GT1 <----------DOF2 - <-----------RAV1(2) ----------->GT1 ----------->GT1 <---------PCF2 -
attatgcaggtgtgattgtaaaagtgagtataaagtggatgaagagagaagtagtaaatatccttttgtgggtgctctatgtatgaatggtggagatgta	1235000
<----------DOF2 =============================================================MADS_MADS ---------->RAV1(1) <-------TEIL --------------->AGL15 <-------TEIL ---------->DOF2 ----------->AtMYB77 <-----------RAV1(2)<---------------AGL15 --------->AtLEC2
gacaacagttacaccaccaagtctcttcttcaggttctttcttcttctctacatatagtatatgtttctataagacatgcatacacaaattaaagtatca	1235100
------>ZmHOX2a(2) ==========================HOX2a_HOX2a <<<<<<<<<GATA-1 <------ZmHOX2a(2) <------ZmHOX2a(1) <-----------GT1 ---------->DOF2 ===========================HOX2a_HOX2a <--
tttcttaacatgtgttttatctatgttttcagaaaagagttttatcaataaccaatccgatcttagttaaaaacacagaggaaatgttgacaaacttgga	1235200
------>ZmHOX2a(2) <------ZmHOX2a(2) <-------TEIL =====================================HOX2a_HOX2a ----- ------>ZmHOX2a(1)<-----------------AG <------ZmHOX2a(1) --------->O2 ===== --------DOF2 =================================================================================
ctttcctaaatgcattaaggtagccgatttaggttgttcttcaggacaaaacacgtttttggccatgtctgagatcgtcaacacaatcaatgtattgtgt	1235300
<------NtERF2 <------NtERF2 ------>NtERF2 ----------- ---------->DOF2 <---------- ------------>AGL3 <------NtERF2 <-------TEIL ==================================================================================================== =============MADS_MADS ------>ZmHOX2a(2) <-------TEIL <----------DOF2
caaaaatggaaccaaagccggccggagatagattgttgtttgaatgatctccctactaacgatttcaacacaacgttcaagttcataactttcttcaaca	1235400

AGI:	At5g04380.1
Description:	S-adenosyl-L-methionine:carboxyl methyltransferase family protein. similar to NAMT1 [Arabidopsis thaliana] (TAIR:AT5G04370.2); similar to NAMT1, S-adenosylmethionine-dependent methyltransferase [Arabidopsis thaliana] (TAIR:AT5G04370.1); similar to methyl transferase [Arabidopsis lyrata subsp. lyrata] (GB:AAP57211.1); contains InterPro domain SAM dependent carboxyl methyltransferase (InterPro:IPR005299)
Range:	from: 1234884	to: 1236318	Orientation: Forward
Links:	TAIR MIPS

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