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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                --------->ARR14(2)
                                                <---------ARR14(2)
                                                --------->GLK1(2)
                                        ----------->GT1
--------TOE2(3)                       <---------ZAT14
------->ANAC58                        --------->ZAT18                                           ----
------->ANAC58                     <---------ZAT6                                  <------ZmHOX2a(2)
---ICU4                      --------->ATHB12  <---------GLK1(2)                  <---------ARR11(3)
--YAB1  ----------->GT1   --------->TOE2(3)---------->DOF2    --------->AHL20(2)  --------->ARR11(3)
->ICU4--------->ALFIN1 <-----------GT1--------->ZAT14    ----------->GT1 --------->REM1(2)   -------
 
caaggaagagtgtgtgaaaaaatgtttttccttcattagagtgaagtaaagaatctggtaacgaaaaaaatgtctgtgtatacaagatcaccgaaaatgt  937600
                                                                                                  --
                                                                                                  <-
                                                                         ------->GAMYB            --
                                                                      ------->GAMYB               <-
                  --------->ARR11(3)                                 --------->MYB46(3)          ---
 --------->ARR14(2)           ---------->DOF2                        <---------MYB52(2)         <---
 --------->GLK1(2)<---------ARR11(3)                                 <---------MYB55(2)      -------
 <---------ARR14(2) >>>>>>>>>RAP2.2                                  <---------MYB111(2)     -------
<---------GLK1(2)--------->RVE1(1)                              --------->YAB1         --------->YAB1
------>DOF2      --------->CCA1(1)      <---------REM1(1)    --------->WOX13(1)    ----------->GT1--
---->GT1   ----------->GT1 --------->TOE2(3)         --------->AHL20(2)--------->MYB52(1)    -------
 
aaagaatctggtaatggaaaatatctaaaacattaaaccagaaatgtagcacttgattaaaaaccaattacaacaaccgaaataaaccgataataaacgc  937700
   <-----------------AG
   <-----------------AGL1
   ----------------->AGL1
----------->HVH21                                         --------->ATHB12
--------->RAV1(2)                                         <---------ICU4
--------At4g35610                                         --------->ATHB51
------->At4g35610                                        <---------YAB1
--------ZAT2                                           --------->YAB1
--->NtERF2                                           ------>MYB83  ------->GAMYB
--------RAV1(2)             ------->GAMYB            ------>MYB46(1)
-->ANAC58                 --------->MYB52(1)         --------->ANAC58                    --------->WOX13(1)
-->ANAC58                --------->MYB52(1)          --------->ANAC58                   --------->AHL20(2)
------->ZAT2            --------->MYB46(3)       ------>NtERF2     ----------->GT1      <---------AHL20(2)
-->ANAC46        ----------->GT1            ------->TEIL --------->ICU4                --------->AHL20(2)
 
cagctggccggtcttggaaatggataaacaaccgaaataaaccgatgtatgccaccaagcataattgcaacggtataatgcttcaaacaaataaatcaaa  937800
                                              <---------YAB1
                              ------>ZmHOX2a(2)
                          <---------YAB1  --------->YAB1
                        --------->YAB1 -------->HAHB4
             --------->MYB46(3)     --------->YAB1----------->GT1
        --------->YAB1  <---------ICU4 --------->YAB1
   ----------->GT1     --------->ICU4 <---------YAB1                            --------->DAG2
  --------->DAG2    <---------YAB1 <---------------AGL15                       ---------->DOF2     -
---------->DOF2  <----------DOF2   --------------->AGL15             <---------TOE2(3)<------ZmHOX2a(2)
 
ctaaaaaggtatcacaacaacttttgattatgatcccactaataatagtattgttgtaaatctaaaatttcaaaggttttcaaaaagggatcatcttcat  937900
                                                                                    --------->ANAC58
                                                                                    --------->ANAC58
                                                                           *TSS<------ZmHOX2a(1)
                                                                         <--------HAHB4
                                                                         --------->ATHB51
                                                                         <---------ICU4
                                                                         --------->ATHB12
                                                                        --------->ICU4 --------->GLK1(1)
                                                                      <---------------AGL15
                        <---------ANAC46                              --------------->AGL15
                    <-------GAMYB                                    ----------------->AGL2       <-
                    <---------ANAC58                                 <-----------------AGL2       <-
                    <---------ANAC58  ----------->GT1                ----------------->AGL3      ---
                   <------MYB46(1)--------->ARR14(2)         <----------DOF2 --------->MYB59    <---
        <---------AHL20(2)        <---------ARR14(2)   --------->ANAC58 <---------YAB1 <---------GLK1(1)
 --------->MYB52(1)<------MYB83--------->AHL20(2) --------->ANAC46   <-----------------AGL3    -----
--------->CCA1(2)  <---------MYB46(3) --------->LBD16  --------->ANAC58<---------------AGL15  ------
-------->ARR11(3) <---------AtMYB61 <---------LBD16<-----------HVH21 ----------------->AGL1 --------
 
aagataccggtttaatttgatttggttgcgatgaataaatccggttaagacaccagtcacgctcctttcgcttccattattaggaacaagaaatccaacg  938000
                                                                                              <-----
                                                                                              ------
                                                                                              <-----
                                                                                             -------
                                                                                             <------
                                                                                             <------
                                                                                             -------
                                                                                             -------
                                                                                            --------
                                                                                            --------
                                                                                            --------
                                                                                            --------
                                                                                            <------NtERF2
                                                                                            --------
                                                                                            --------
                                                                                            --------
                                                                                           ---------
                                                                                           <--------
                                                                                           ------>NtERF2
                                                                                           <--------
                                                                                          --------->DEAR3(1)
                                                                                         --------->RAP2.3(1)
                                                                                         <------NtERF2
                                                                                         --------->ATERF1(1)
                                                                                         <---------ABI4(2)
                                                                                         --------->RRTF1(1)
                                                                                         --------->ERF1
                                                                                         --------->RAP2.6(1)
                                                                                        <---------ATERF1(1)
                                                                                        --------->LBD16
                                                                                        <---------ORA47(2)
                                                                                        ------>NtERF2
                                                                                        <---------DEAR4(2)
                                                                                       <---------RAP2.3(2)
                                                                                       <---------RAP2.3(3)
                                                                                       <---------ATERF1(2)
                                                                                       --------->DEAR3(1)
                                                                                       <---------DEAR3(1)
                                                                                     <---------ZAT2
                                                                                     --------->At4g35610
                                                                                     <---------ATERF1(1)
                                                                                     ------>NtERF2
                                                                                     <---------At4g35610
                                                                                     --------->ZAT2
                                                                                    --------->DEAR3(1)
                                                                                   --------->ATERF1(1)
                                                                                   <-----------RAV1(2)
                                                                               <-----------HVH21
                                                                              <---------bZIP60(1)
                                                                              <---------bZIP60(2)
                                                                              --------->bZIP60(2)
                                                                              <---------TGA1a<------
                                                                              --------->bZIP60(1)<--
                                                                              --------->O2--------->RAP2.3(2)
                                                                              <---------O2<---------DEAR3(1)
                              --------->ANAC58                        =========================RAV
       <---------ZAT18        --------->ANAC58                        ----------->RAV1(1)--------->DEAR4(2)
    ---------->DOF2          --------->DAG2       >>>>>>>>>TBF1      ===================MYC_MYB<----
--------WRKY38(1)      ----------->GT1   <---------HSFB2a(2)         --------->At1g77200<---------RAP2.3(1)
--------WRKY12        ----------->GT1    --------->HSFB2a(2)         --------->DREB2C(2)<---------ERF1
------>WRKY18(1)   --------->MYB52(1)   <---------LBD16              ------->GAMYB<---------ATERF1(1)
--------HVH21    --------->CCA1(2) --------->ARR14(2)                ----------->HVH21 --------->ATERF1(2)
-->GAMYB --------->ZAT18    ---------->DOF2    >>>>>>>>>TBF1        --------->MYB46(3)--------->ATERF1(1)
--->MYB46(3)   --------->At4g35610 <---------GLK1(2)            <-------TEIL  --------->TGA1a-------
->MYB52(1)  <---------At4g35610    <---------ARR14(2) <----------ID1--------->DEAR3(2)--------->DEAR3(2)
 
gtcatcgtagagcgcatcagataaacggctaaaaagcaaattctctggaagaagaagaagacgaagatgcaaccgacagagacgtcgcagccggcgccgt  938100
          --------->DREB2C(2)
          --------->DEAR3(1)
         <---------LBD16
         <------NtERF2
         --------->ATERF1(1)
         --------->ORA47(2)
         --------->DEAR4(2)
        <---------ATERF1(1)
        --------->At4g35610
==========================HOX2a_HOX2a
<------ZmHOX2a(2)
----SPL7<------NtERF2
>NtERF2 <---------RAP2.3(1)
------HVH21
-->O2  --------->DEAR3(1)
---O2  <---------DEAR3(1)
---ANAC46--------->RAP2.3(1)
-->RAP2.3(3)
-->RAP2.3(2)
->ATERF1(1)        <------ZmHOX2a(1)
->RRTF1(1)--------->RAP2.3(3)
->RAP2.6(1)      <---------TOE1(3)                                                               <--
->RAP2.3(1) <------NtERF2                                                                       <---
->DEAR4(2)<---------DEAR3(1)                                                                   <----
->ORA47(2)<---------ATERF1(2)                                                                  <----
->ERF1<---------RAP2.6(2)                               <---------ATHB12                       <----
>ABI4(2)------>NtERF2<------ZmHOX2a(2)              --------------->AGL15                      <----
-ATERF1(1)--------->ATERF1(2)                       <---------------AGL15                      -----
-RAP2.3(1)--------->RAP2.3(2)                      ----------------->AGL3                      <----
---DEAR3(1)------>NtERF2                           ----------------->AGL2                     <-----
-------DEAR3(2)  <---------TOE2(3)                 ----------------->AGL1                   <-------
--NtERF2<---------At4g35610              --------->At4g35610                              <---------
-->DEAR3(1)--------->LBD16 --------->MYB52(1)  <---------At4g35610                   ---------->DOF2
 
cggatcaaggccgccggcttaaggatcagttatcggagagtatgagcttcagtagccaaatgaagaaggaagacgatgagttgtcgatgaaagctttgtc  938200
----NtERF2
------RAP2.3(1)
-----DEAR4(1)                 >>>>>>>>>TBF1
-----At1g77200          <---------HSFB2a(2)                             <---------ANAC58
-----DREB2C(2)        <------ZmHOX2a(2)                                 <---------ANAC58
-----RAP2.3(3)       <---------ARR14(2)                              <------MYB46(1)
---->ETT(1)          --------->ARR11(3)          ---------->DOF2     <------MYB83
-----DEAR3(1)       --------->GLK1(1)     <---------ARR11(3)     <---------ZAT2
----ORA47(1)      ================================HOX2a_HOX2a    <---------At4g35610
----RAV1(1)       <------ZmHOX2a(1)      <---------GLK1(1)       --------->At4g35610              --
-DOF2    ---------->DOF2--------->HSFB2a(2)<------ZmHOX2a(2)     --------->ZAT2                   --
 
ggcgttcaaggccaaagaagaggagatcgagaagaagaagatggagatcagagaaagagttcaagctcagcttggtcgtgttgaagatgagtccaagcgt  938300
                                                                                               <----
                                                                                               -----
                                                                                               <----
                                                                                      <---------ZAT6
         <---------HSFB2a(2)                                                          <---------ANAC46
    --------->ATHB12                                                                  ----------->GT1
   ----------->ARR10                                                             <---------REM1(1)
   <---------YAB1                                          <-----------GT1    <-----------RAV1(1)
------->ANAC58                     <-----------GT1  <---------ANAC46     <---------TOE2(3)    ------
------->ANAC58                  <---------ICU4   <---------AtMYB61   <----------DOF2<---------ANAC46
 
ctcgctatgattcgcgaggtttgatttcgaatacattatttcaattcgagttttggtgtgattcacttgctgctttaagttttgttgtagtgtatattag  938400
                                                                        --------------->AGL15
                                                                        <---------------AGL15
                                                                       ----------------->AGL2
                                                                       <-----------------AGL3<------MYB83
                                                                 <---------ANAC58           --------
                                                                 <---------ANAC58        --------->ARR14(2)
      ------>ZmHOX2a(1)          --------->AHL20(2)  --------->ARR11(3)----------------->AGL3<------MYB46(1)
--MYB46(1)              ---------->DOF2 <-----------GT1     <---------MYB46(3)           <---------ARR14(2)
------>GT1 <---------ANAC58 ----------->GT1        <---------TOE1(3)<---------ZAT14 <---------ZAT2
--MYB83    <---------ANAC46 <----------ID1         <---------TOE2(3)--------->ZAT18 --------->At4g35610
--->MYB59  <---------ANAC58----------->GT1    <----------DOF2    <---------ANAC46---------->DOF2
 
gtcaaattcctatggcttatagtgactaaaagggaaaaaaattcaacctcttttaagatttagtagttgagtgttctaaaattagaaagctggatttggt  938500
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AGI:  At5g03650.1   
Description:  SBE2.2 (STARCH BRANCHING ENZYME 2.2); 1,4-alpha-glucan branching enzyme. similar to SBE2.1 (STARCH BRANCHING ENZYME 2.1), 1,4-alpha-glucan branching enzyme [Arabidopsis thaliana] (TAIR:AT2G36390.1); similar to starch branching enzyme II [Vigna radiata] (GB:AAT76444.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15952.1); similar to starch branching enzyme II [Populus trichocarpa] (GB:ABN05322.1); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193); contains InterPro domain Glycosyl hydrolase, family 13, all-beta; (InterPro:IPR013780); contains InterPro domain Immunoglobulin E-set (InterPro
Range:  from: 931903    to: 937640    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At5g03660.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G09980.1); similar to unknown [Populus trichocarpa] (GB:ABK93998.1); contains InterPro domain Protein of unknown function DUF662 (InterPro:IPR007033)
Range:  from: 937976    to: 940057    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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