Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               ----------->GT1                              <---------TOE2(3)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------AHL20(2)               --------->AHL20(2)           <---------AHL20(2) <---------TOE1(3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->TOE2(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         ------->TEIL                        <---------ICU4  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------------AtSPL8                  --------->ATHB51  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --------------->AtSPL8                  <--------ATHB1  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------ATHB51  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------ATHB12  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------------AtSPL3          <------MYB83  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------AHL20(2)              --------->ATHB12  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->AHL20(2) --------->AHL20(2)  <-------TEIL  <xxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <------MYB46(1)         - <---------ANAC58       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------YAB1           ----- <---------ANAC58       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <------ZmHOX2a(1)          <----   atggcatacctatgtaattacttacaaaaattaaggttacatttaaaatgtacttcccaaataatatagtaggatgataggttcaataatttggcatata  16865100                                              <---------ANAC46                               <------MYB46(1)                  <---------------AGL15     <---------ANAC46                                 <------MYB83                  --------------->AGL15   <---------ZAT14                                   <--------             <----------DOF2         <---------ANAC58                                   <---------TOE1(3)   --------->ARR11(3)          --------->AHL20(2)                                   <----------DOF2 <---------AHL20(2)            <---------AHL20(2)                              ---------->DOF2     -- -------->AHL20(2)<----------DOF2    <---------ANAC58                      --------->At5g28300<------ ---->AHL20(1)   <-----------------AGL1   <-------GAMYB                   ----------->GT1  --------->ALFIN1 -----AHL20(1)   ----------------->AG<---------ANAC46<---------AtLEC2    ----------->GT1<---------TOE2(3)   tattaaatcttgtgacttttctttaaggggcaattttttgtgtgtgttgtgttttgtatgaaatataacttaagaggggtaaaaagctttaaggtgggtt  16865200           --------->AHL20(2)                       <---------At4g35610       <---------AHL20(2)                           --------->At4g35610       --------->AHL20(2)                    <------NtERF2       --------->AHL20(1)                    <---------MYB52(1)    --------->LBD16      --------->AHL20(2)                --------->ANAC46   --------->TOE2(3)                   <-----      <---------AHL20(2) --------->ANAC58   <-----------HVH21    ------->GAMYB            --------->ARR14(2) -MYB46(3) <---------AHL20(2)    XXXXXXXXXXXXXXXXXXXX>MIR4228   --------->MYB46(3)        <---------ARR14(2) ------->ZAT6            --------->ANAC58   ------>NtERF2  --------->TOE1(3)        --------->ANAC46 -GAMYB<---------AHL20(1)--------->ANAC46  --------->DEAR3(1)  -------->P       <-----------GT1------   atctctaaataaattatatgtgtgtataagccaaaaactaaaacgccgtcgtttagctaaaccctaacccccaaattgcgattttccctccagttccaca  16865300                                                  <---------ATERF1(1)                                          <---------ANAC58                                          <---------ANAC58                                     ------         <----------DOF2   <---------ANAC58   --------->DAG2                                <--------  --------->At4g35610      <---------ANAC58 ---------->DOF2  <-----------GT1              --------->At4g35610 ----ALFIN1     <---------MYB52(1)--------->GLK1(2)  ------>NtERF2                   --------->YAB1 --->ANAC46   <---------------AGL15  <-----------RAV1(1)<----------DOF2             --------->ICU4   cagttgctgaactttcccgttaagagcgagcgtgagattatgttgcgaaaggcgatgcctttttctcaatttcatgtctaatggcgataatcagctttgc  16865400                       --------->ARR14(2)                       <---------ARR14(2)                    --------->LBD16                                                                <-                  <---------LBD16                                                       <---------At4g35610                  --------->LBD16                                                       --------->At4g35610                 --------->ANAC46                                                    ------>ZmHOX2a(1)                <---------LBD16                                                      ================         <---------WOX13(1)                                                          --------->LBD16- --->ZAT14   <---------GLK1(1)                                                      --------->TOE1(2) --DOF2 <------------CBF  <-----------GT1                                     <---------MYB52(1)   ==   agtctccagtaattgatacccgcgggattttcttcttacaaatttgggtctagggtttttgtttctcggtgtctcagtccgataatcctgagatgaagac  16865500             <------NtERF2            --------->LBD16            <---------SPL7            <---------RAP2.6(3)           --------->ATERF1(2)           --------->ETT(1)           --------->HSFB2a(2)                                               --------->ARR11(3)           <---------ATERF1(2)                  --------->YAB1               <---------ARR11(3)           <---------HSFB2a(2)         --------->HSFC1(1)            <---------MYB46(3)          <---------LBD16         <---------ANAC58                   <---------ANAC58  --------->ANAC58         --------->ANAC58    <---------YAB1        <---------ANAC46  --------->ANAC58         --------->ANAC58  --------->YAB1          <---------ANAC58 -----ZmHOX2a(2)       <-----------HVH21    --------->ICU4          --------->ALFIN1 =====HOX2a_HOX2a<------ZmHOX2a(1)<---------ANAC58            <---------ANAC46                      < --------->DOF2  <---------------AtSPL3--------->HSFB2a(2)    <---------ANAC58                      - =======================HOX2a_HOX2a    <---------HSFB2a(2)    <---------ANAC58             ------->GAMYB   gatcaagcccttgccggaaggagttcgtcactccatgcgttctggaattatcatgttcgacatggcgagggtcgtggaagaactcgtcttcaacagtctc  16865600                  ----------------->AGL3                <---------ARR14(2)                --------->ARR14(2)              --------->HSFC1(2)              <---------HSFB2a(1)             <---------TOE2(3)                                                                -------        ------>NtERF2                                                            --------->ARR11(3)       ----------->HVH21       <---------ARR14(2)                                <---------ARR11(3)      --------->ATERF1(1)      --------->ARR14(2)                               <---------GLK1(1)   < ---------ZAT2--------->HSFB2a(1)     ------>ZmHOX2a(1)                <---------At4g35610    <------ -------->ZAT2<---------HSFC1(2)   ------>ZmHOX2a(1)                  <---------YAB1        <--------   gatgctggggcgaccaaggttccacatatatcagttcctccttcttcgatttcttctgggtttggaacaattctgcttatcgatatctctatattcaggt  16865700                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                            -------->ATHB1          <---------ANAC58                                                                  ---------          <---------ANAC58                                                      --------->TOE2(3)   -         <---------TOE1(2)                                                   <-----------GT1<--------         <---------DEAR3(1)                                               <----------DOF2   ---------         <---------MYB46(3)                                         --------->YAB1         --------->ICU4      <---------ANAC46                                              --------->ATHB12       <---------ATHB12 -->At4g35610                                                       <---------ICU4         <---------YAB1 ---------CCA1(2)                     <---------ANAC46             <---------ATHB12      --------->YAB1 ---At4g35610<-------GAMYB     ---------->DOF2    ----------->GT1  --------->ICU4-------------------- ---RAV1(2) --------->ALFIN1 ----------->HVH21  <---------ANAC46  <---------ARR11(3)    --------->ICU4   gtctatcttcgtgggtgttgtttcatgctctgtgaaagttgtggatgatggtgagtatatagcttcaaaatcattacttttacctttgtactaatcattg  16865800  ------>ZmHOX2a(1) --------------->AGL15 <---------------AGL15 -----------------AGL2 -----------------AGL3                                                                   --------->ARR11(3) ---------------->AGL3                                                                 ----------->ARR10 ---------------->AGL2                     <---------ANAC58                        ----------->GT1 -----------------AGL1                 <-----------RAV1(2)                      --------->CCA1(2) -------->YAB1                         <xxxxxxxxxxxxxxxxsmallRNA(i)             --------->ARR14(1) ---------------->AG                 <-----------HVH21                         --------->ARR11(1) -----------------AG                 <---------ARR14(2)                        --------->ARR11(3) >YAB1                           <---------LBD16                  <-----------RAV1(1)<--------P ---------------->AGL1   <----------DOF2   <---------ANAC58  <------MYB83      <---------ARR11(3) -ICU4              <---------WOX13(1)<------ZmHOX2a(2)      <------MYB46(1)   <---------ARR14(2) >ATHB12          --------->ATHB12   --------->ARR14(2) --------->ATHB12       --------->ARR14(2) ->WRI1          <---------AHL20(2) <------ZmHOX2a(1)--------->CCA1(2)       ----------->ARR10    <--   aatcctaatttggaaatatttcattgactttggtttcaggatcaggcgtttcaagagatgatttggttttgttgggagaaagatatggtaagttctggct  16865900                                                                                                -----                                                                                               ------                                                                                              -------                                                                                             <-------                                                                                             --------                                                                                             <-------                     <-----------GT1       <---------ICU4                                   ------>MYB46(1)                <---------YAB1             --------->YAB1                        --------->ANAC46              <---------ICU4              --------->ICU4                ---------->DOF2     ------>MYB83              --------->YAB1              <---------ATHB12      --------->At4g35610       --------->DEAR3(1)           --------->YAB1    --------->At4g35610                <---------At4g35610      --------->MYB46(3) --------DOF2--------->ICU4------>ZmHOX2a(2)              ---------->DOF2      <-----------GT1<------   cttttttgttctctcattatgattttcgatctgatgagaaactaatcatgagcaatgtgtaaaagcagctacttcaaagtttcacgacttcaccaacgtg  16866000  Previous    Next  AGI:  At4g35519.1    Description:  unknown protein Range:  from: 16865253    to: 16865375    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g35520.1    Description:  ATMLH3/MLH3 (MUTL PROTEIN HOMOLOG 3); ATP binding. similar to DNA mismatch repair protein, putative [Arabidopsis thaliana] (TAIR:AT4G02460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14478.1); contains InterPro domain DNA mismatch repair protein, C-terminal; (InterPro:IPR013507); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain MutL, C-terminal, dimerisation (InterPro:IPR014790); contains InterPro domain DNA mismatch repair protein; (InterPro:IPR002099); contains InterPro domain DNA mismatch repair protein, N-terminal (InterPro:IPR014763) Range:  from: 16865493    to: 16871769    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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