Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      x                                                                                                    x                                                                                                    <                                                                                                    x 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                                                                                             <xxxxxx                                                                                              <xxxxxx                                                                                              xxxxxxx                                                                                              <xxxxxx                                                                                              xxxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                            xxxxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                           <xxxxxxxxx                              <---------AHL20(2)                                           <xxxxxxxxx                              --------->AHL20(1)                                           <xxxxxxxxx                              --------->AHL20(2)                                           <xxxxxxxxx                         --------->AHL20(1)                                               <xxxxxxxxxx                         --------->AHL20(2)                                               xxxxxxxxxxx                         <---------AHL20(1)                                               <xxxxxxxxxx                         <---------AHL20(2)                           --------->AHL20(2)  <xxxxxxxxxx                    --------->AHL20(2)                                <---------AHL20(2)  <xxxxxxxxxx                    <---------AHL20(2)                               --------->AHL20(1)   <xxxxxxxxxx                    <---------AHL20(1)                               <---------AHL20(2) --------->AHL20(1)                    --------->AHL20(1)                               --------->AHL20(2) <xxxxxxxxxxxx                --------->AHL20(2)                                   <---------AHL20(1) <---------AHL20(2)                --------->AHL20(1)                                  --------->AHL20(2)  --------->AHL20(2)                <---------AHL20(1)                                  <---------AHL20(2)  <---------AHL20(1)                <---------AHL20(2)                               --------->AHL20(2)    <xxxxxxxxxxxxx     <---------ANAC58--------->AHL20(2)                  ---------->DOF2               --------->AHL20(2)     <---------ANAC58<---------AHL20(2)                ------>ZmHOX2a(1)            <xxxxxxxxxxxxxxxx ------->TEIL  <---------AHL20(2)                     --------->TOE1(3)        <----------DOF2<xxxxxx -----ICU4     --------->AHL20(2)        <---------AHL20(2)  ----------->GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->ICU4  --------->AHL20(2)--------->AHL20(2)       --------->TOE2(3)   <-----------GT1<xxxxxxxxxxx ->YAB1    <---------AHL20(2)<---------AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxx   atgtatttcgtttttaattaaatttaattaattaaattagtatttgattttttaatccttaaagagataaattaatttactctttaaaattttatttcta  16865000               --------->AHL20(2)               <---------AHL20(2)           <---------AHL20(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->TOE2(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   xxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------ANAC58       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxsmallRNA(s2)                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(si3)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(le3)                      <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(i2)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxsmallRNA(le3)                 <---------------AtSPL3 xxxxxxxxxxxxxsmallRNA(le3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxsmallRNA(le3)                <---------------AtSPL8 xxxxxxxxxxxxxsmallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ICU4 xxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------AHL20(2) xxxxxxxxxxxxxsmallRNA(s2)                  --------------->AtSPL8                  --------->ATHB51 xxxxxxxxxxx>smallRNA(l2)               --------->AHL20(2)                          <--------ATHB1 xxxxxxxxxxxxxsmallRNA(le3)             <---------AHL20(2) --------->AHL20(2)      <---------ATHB51 xxxxxxxxxxxxxsmallRNA(i2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------ATHB12 xxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <-------TEIL xxxxxxxxxxxxxsmallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <------MYB46(1) xxxxxxxxxxxsmallRNA(si3)      ----------->GT1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxsmallRNA(si3)     <---------TOE1(3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->AHL20(2) xxxxxxxsmallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <------MYB83 xxxxxxxxxxxxxxxxsmallRNA(si3)<---------TOE2(3) ------->TEIL            --------->ATHB12            - xxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <---------YAB1           <---- xxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <------ZmHOX2a(1)          -----   atggcatacctatgtaattacttacaaaaattaaggttacatttaaaatgtacttcccaaataatatagtaggatgataggttcaataatttggcatata  16865100                                              <---------ANAC46                               <------MYB46(1)                  <---------------AGL15     <---------ANAC46                                 <------MYB83                  <----------DOF2    <---------ANAC58                                       <--------             <----------DOF2         <---------ANAC46                                   <---------TOE2(3)   --------->ARR11(3)          --------->AHL20(2)                                   <----------DOF2 <---------AHL20(2)            <---------AHL20(2)                              ---------->DOF2     -- -------->AHL20(2)--------------->AGL15   <-------GAMYB                    --------->At5g28300<------ -----AHL20(1)   ----------------->AG<---------ANAC58<---------AtLEC2     ----------->GT1  --------->ALFIN1 ---->AHL20(1)   <-----------------AGL1   <---------ZAT14                ----------->GT1<---------TOE1(3)   tattaaatcttgtgacttttctttaaggggcaattttttgtgtgtgttgtgttttgtatgaaatataacttaagaggggtaaaaagctttaaggtgggtt  16865200           <---------AHL20(2)                       --------->At4g35610       --------->AHL20(1)                           <---------At4g35610       <---------AHL20(2)                    <---------MYB52(1)       --------->AHL20(2)                    <------NtERF2         --------->LBD16      <---------AHL20(2)                --------->ANAC46   --------->TOE1(3)                   ------      --------->AHL20(2) --------->ANAC58   ------>NtERF2  --------->TOE2(3)              --------->ARR14(2) -MYB46(3) --------->AHL20(2)    XXXXXXXXXXXXXXXXXXXX>MIR4228    ------->GAMYB            <---------ARR14(2) ------->ZAT6            --------->ANAC46   <-----------HVH21   --------->MYB46(3)  --------->ANAC46 -GAMYB<---------AHL20(1)--------->ANAC58  --------->DEAR3(1)  -------->P       <-----------GT1<-----   atctctaaataaattatatgtgtgtataagccaaaaactaaaacgccgtcgtttagctaaaccctaacccccaaattgcgattttccctccagttccaca  16865300                                                  <---------ATERF1(1)                                          <---------ANAC58                                          <---------ANAC58                                     ------         <----------DOF2   <---------ANAC58   --------->DAG2                                <--------  --------->At4g35610      <---------ANAC58 ---------->DOF2  <-----------GT1              --------->At4g35610 --->ANAC46     <---------MYB52(1)--------->GLK1(2)  ------>NtERF2                   --------->YAB1 ----ALFIN1   <---------------AGL15  <-----------RAV1(1)<----------DOF2             --------->ICU4   cagttgctgaactttcccgttaagagcgagcgtgagattatgttgcgaaaggcgatgcctttttctcaatttcatgtctaatggcgataatcagctttgc  16865400                       <---------ARR14(2)                       --------->ARR14(2)                    --------->LBD16                                                                ==                  <---------LBD16                                                       <---------At4g35610                  --------->LBD16                                                       --------->At4g35610                 --------->ANAC46                                                    --------->LBD16-                <---------LBD16                                                      ------>ZmHOX2a(1)         <---------WOX13(1)                                                          ================ --->ZAT14   <---------GLK1(1)                                                      --------->TOE1(2) --DOF2 <------------CBF  <-----------GT1                                     <---------MYB52(1)   <-   agtctccagtaattgatacccgcgggattttcttcttacaaatttgggtctagggtttttgtttctcggtgtctcagtccgataatcctgagatgaagac  16865500             <------NtERF2            <---------SPL7            <---------RAP2.6(3)            --------->LBD16           --------->HSFB2a(2)           <---------HSFB2a(2)           <---------ATERF1(2)                                               --------->ARR11(3)           --------->ETT(1)                     --------->YAB1               <---------ARR11(3)           --------->ATERF1(2)         --------->HSFB2a(2)           <---------ANAC58          <---------LBD16         <---------ANAC58                   <---------ANAC58  --------->ANAC58         --------->ANAC58    <---------YAB1        <---------ANAC46  --------->ANAC58         --------->ANAC58  --------->YAB1          <---------MYB46(3) =======================HOX2a_HOX2a    <---------HSFB2a(2)          --------->ALFIN1 --------->DOF2        <-----------HVH21    --------->ICU4    <---------ANAC58                      < =====HOX2a_HOX2a<------ZmHOX2a(1)<---------ANAC58            <---------ANAC46                      - -----ZmHOX2a(2) <---------------AtSPL3--------->HSFC1(1)     <---------ANAC58             ------->GAMYB   gatcaagcccttgccggaaggagttcgtcactccatgcgttctggaattatcatgttcgacatggcgagggtcgtggaagaactcgtcttcaacagtctc  16865600                  ----------------->AGL3                --------->ARR14(2)                <---------ARR14(2)              --------->HSFB2a(1)              <---------HSFB2a(1)             <---------TOE2(3)                                                                <------        ------>NtERF2                                                            <---------ARR11(3)       ----------->HVH21       <---------ARR14(2)                                --------->ARR11(3)      --------->ATERF1(1)      --------->ARR14(2)                               <---------GLK1(1)   < ---------ZAT2<---------HSFC1(2)      ------>ZmHOX2a(1)                <---------At4g35610    ------- -------->ZAT2--------->HSFC1(2)   ------>ZmHOX2a(1)                  <---------YAB1        <--------   gatgctggggcgaccaaggttccacatatatcagttcctccttcttcgatttcttctgggtttggaacaattctgcttatcgatatctctatattcaggt  16865700                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    <                                                                                            -------->ATHB1          <---------ANAC58                                                                  ---------          <---------ANAC58                                                      --------->TOE2(3)   -         <---------TOE1(2)                                                   <-----------GT1<--------         <---------DEAR3(1)                                               <----------DOF2   ---------         <---------MYB46(3)                                         <---------ICU4         --------->ICU4      <---------ANAC46                                              --------->YAB1         <---------ATHB12 ---At4g35610                                                       --------->ATHB12       <---------YAB1 ---------CCA1(2)                     <---------ANAC46             --------->ICU4-------------------- -->At4g35610<-------GAMYB     ---------->DOF2    ----------->GT1  <---------ATHB12      --------->YAB1 ---RAV1(2) --------->ALFIN1 ----------->HVH21  <---------ANAC46  <---------ARR11(3)    --------->ICU4   gtctatcttcgtgggtgttgtttcatgctctgtgaaagttgtggatgatggtgagtatatagcttcaaaatcattacttttacctttgtactaatcattg  16865800  ------>ZmHOX2a(1) <---------------AGL15 --------------->AGL15 -----------------AG ---------------->AG                                                                     --------->ARR11(3) -----------------AGL1                                                                 ----------->ARR10 ---------------->AGL3                     <---------ANAC58                        ----------->GT1 ---------------->AGL1                 <xxxxxxxxxxxxxxxxsmallRNA(i)             --------->CCA1(2) -------->YAB1                         <-----------RAV1(2)                      --------->ARR14(1) -----------------AGL3               <---------ARR14(2)                        <---------ARR14(2) -----------------AGL2               --------->ARR14(2)                        --------->ARR11(3) >ATHB12                         <---------LBD16                  <-----------RAV1(1)<--------P ---------------->AGL2   <----------DOF2   <---------ANAC58  <------MYB83      <---------ARR11(3) -ICU4              <---------WOX13(1)<------ZmHOX2a(2)      <------MYB46(1)   --------->ARR14(2) >YAB1            --------->ATHB12   <-----------HVH21  --------->ATHB12       --------->ARR11(1) ->WRI1          <---------AHL20(2) <------ZmHOX2a(1)--------->CCA1(2)       ----------->ARR10    <--   aatcctaatttggaaatatttcattgactttggtttcaggatcaggcgtttcaagagatgatttggttttgttgggagaaagatatggtaagttctggct  16865900  Previous    Next  AGI:  At4g35519.1    Description:  unknown protein Range:  from: 16865253    to: 16865375    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g35520.1    Description:  ATMLH3/MLH3 (MUTL PROTEIN HOMOLOG 3); ATP binding. similar to DNA mismatch repair protein, putative [Arabidopsis thaliana] (TAIR:AT4G02460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14478.1); contains InterPro domain DNA mismatch repair protein, C-terminal; (InterPro:IPR013507); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain MutL, C-terminal, dimerisation (InterPro:IPR014790); contains InterPro domain DNA mismatch repair protein; (InterPro:IPR002099); contains InterPro domain DNA mismatch repair protein, N-terminal (InterPro:IPR014763) Range:  from: 16865493    to: 16871769    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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